GENSCAN 1.0 Date run: 4-Nov-116 Time: 04:02:33 Sequence gi568815597f:77905111_78116244 : 211134 bp : 38.35% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.00 Prom + 7190 7229 40 -3.05 1.01 Init + 10997 11023 27 1 0 94 107 12 0.369 3.35 1.02 Intr + 12850 12928 79 0 1 42 110 92 0.683 5.01 1.03 Intr + 13015 13163 149 2 2 57 69 156 0.765 9.63 1.04 Intr + 21304 21501 198 0 0 20 54 237 0.780 12.13 1.05 Intr + 21606 21782 177 2 0 41 54 312 0.999 22.29 1.06 Intr + 24206 24394 189 1 0 53 95 253 0.999 21.36 1.07 Intr + 28172 28369 198 1 0 32 94 326 0.996 26.23 1.08 Intr + 30713 30934 222 1 0 10 61 218 0.991 8.70 1.09 Intr + 36913 37098 186 0 0 81 76 191 0.999 16.16 1.10 Term + 37351 37719 369 0 0 61 37 326 0.482 18.46 1.11 PlyA + 38019 38024 6 1.05 2.17 PlyA - 38744 38739 6 1.05 2.16 Term - 42964 42848 117 1 0 48 34 54 0.015 -6.44 2.15 Intr - 44190 44045 146 1 2 56 75 66 0.035 1.18 2.14 Intr - 50309 50145 165 0 0 70 71 61 0.570 1.61 2.13 Intr - 51590 51462 129 0 0 73 88 94 0.838 7.65 2.12 Intr - 55153 55074 80 0 2 91 75 82 0.919 5.48 2.11 Intr - 55385 55234 152 2 2 112 89 53 0.919 5.84 2.10 Intr - 55846 55725 122 2 2 7 65 134 0.589 2.29 2.09 Intr - 57820 57662 159 2 0 25 42 155 0.614 3.64 2.08 Intr - 58605 58563 43 0 1 125 65 87 0.815 6.99 2.07 Intr - 59052 58952 101 1 2 78 36 113 0.998 4.01 2.06 Intr - 59246 59144 103 2 1 27 109 102 0.739 5.03 2.05 Intr - 59637 59536 102 0 0 64 95 123 0.996 10.05 2.04 Intr - 60121 59959 163 0 1 58 72 125 0.990 6.96 2.03 Intr - 61641 61584 58 1 1 66 100 24 0.824 -1.58 2.02 Intr - 64905 64815 91 0 1 98 107 118 0.993 13.35 2.01 Init - 73894 73775 120 1 0 106 111 81 0.822 12.54 2.00 Prom - 78894 78855 40 -5.85 3.00 Prom + 79528 79567 40 -6.25 3.01 Init + 100001 100211 211 1 1 72 115 219 0.999 21.99 3.02 Intr + 107941 108509 569 2 2 51 107 516 0.864 41.37 3.03 Term + 128229 128465 237 2 0 78 42 111 0.184 0.68 3.04 PlyA + 130322 130327 6 1.05 4.07 PlyA - 130821 130816 6 1.05 4.06 Term - 139129 138532 598 0 1 54 47 427 0.708 28.21 4.05 Intr - 140996 140893 104 2 2 113 98 25 0.398 4.05 4.04 Intr - 141389 141120 270 2 0 101 -37 235 0.324 9.12 4.03 Intr - 166502 166332 171 2 0 64 3 230 0.874 11.32 4.02 Intr - 170495 170398 98 0 2 70 109 107 0.983 9.81 4.01 Init - 173798 173789 10 2 1 64 100 8 0.175 0.26 4.00 Prom - 178540 178501 40 -5.45 5.00 Prom + 182534 182573 40 -1.65 5.01 Init + 186389 186742 354 1 0 55 58 304 0.754 21.28 5.02 Intr + 189842 190022 181 1 1 68 111 132 0.883 12.02 5.03 Intr + 194807 194925 119 0 2 6 101 99 0.383 2.26 5.04 Term + 209144 209251 108 1 0 64 47 101 0.035 1.13 5.05 PlyA + 209528 209533 6 -0.45 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:77905111_78116244|GENSCAN_predicted_peptide_1|597_aa MNDISQKAEIKEMLASDDEEDVSSKVEKAYVPKLTGTVKGRFAEMEKQRQEEQRKRTEEE RKRRIEQDMLEKRKIQRELAKRAEQEGDDSLLITVVPVKSYKTSGKMKKNFEDLEKEREE KERIKYEEDKRIRYEEQRPSLKEAKCLSLVMDDEIESEAKKESLSPGKLKLTFEELERQR QENRKKQAEEEARKRLEEEKRAFEEARRQMVNEDEENQDTAKIFKGYRPGKLKLSFEEME RQRREDEKRKAEEEARRRIEEEKKAFAEARRNMVVDDDSPEMYKTISQEFLTPGKLEINF EELLKQKMEEEKRRTEEERKHKLEMEKQEFEQLRQEMGEEEEENETFGLSREYEELIKLK RSGSIQAKNLKSKFEKIGQLSEKEIQKKIEEERARRRAIDLEIKEREAENFHEEDDVDVR PARKSEAPFTHKVNMKARFEQMAKAREEEEQRRIEEQKLLRMQFEQREIDAALQKKREEE EEEEGSIMNGSTAEDEEQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFE GEILQDGEDYQYIERGETYCLYLPETFPEDGGEYMCKAVNNKGSAASTCILTIESKN >gi568815597f:77905111_78116244|GENSCAN_predicted_CDS_1|1794_bp atgaatgatatttcccaaaaggctgagattaaagaaatgcttgcttctgatgatgaggaa gatgtatcttctaaagtagaaaaggcttatgttccaaaattaacaggaactgtgaagggt agatttgctgaaatggagaaacaaagacaagaggaacaaaggaagagaacggaggaggaa cgaaaacgcagaattgagcaggatatgttagaaaagaggaaaatacagcgtgaattagca aaaagggctgaacaggaaggagatgattcactacttataactgtggtacctgtcaaatca tataaaacatctggaaaaatgaaaaagaattttgaggatctagaaaaagaacgtgaagag aaagaaaggatcaagtacgaggaagataaaagaataagatatgaagaacaacgaccatct ctcaaggaagcaaagtgtctttcattagttatggatgatgaaatagaaagtgaagcaaaa aaagaatcactttctcccggaaaattgaaactaacttttgaagaactggagcgacaaaga caagaaaaccgaaagaagcaagctgaagaggaagcaagaaaacgtttagaagaagagaag cgtgcttttgaagaagcaaggcggcaaatggtaaatgaagatgaggaaaaccaagacaca gcaaaaatttttaaagggtaccgccctggtaaactcaaactcagttttgaagaaatggaa aggcaaagaagagaagatgaaaaaaggaaagcagaagaagaagccagaaggagaatagag gaagaaaagaaggcgtttgctgaagcaaggagaaatatggtagtagatgatgactcccca gagatgtataagacaatctctcaagaatttcttacaccgggaaaactggaaattaatttt gaagaattattaaaacaaaaaatggaagaagaaaaacgacgaacagaggaggaacggaag cataagctagaaatggagaaacaagaatttgaacaactgagacaggaaatgggagaggaa gaggaagaaaatgaaacctttggattgagcagagaatatgaagaactgatcaaattaaaa aggagtggctctattcaagctaaaaacctaaaaagcaagtttgaaaaaattggacagttg tctgaaaaagaaatacagaaaaaaatagaagaagagcgagcaagaaggagagcaattgac cttgaaattaaagagcgagaagctgaaaattttcatgaggaagatgatgttgatgttagg cctgcaagaaaaagcgaggctccatttactcacaaagtgaatatgaaagctagatttgaa caaatggctaaggcaagagaagaagaagaacaaagaagaattgaagaacaaaagttacta cgcatgcagtttgaacaaagggaaattgatgcagcactacaaaagaaaagagaagaggag gaggaggaagaaggtagcatcatgaatggctccactgctgaagatgaagagcaaaccaga tcaggagctccatggttcaagaagcctcttaaaaacacatcagttgtagacagtgagcca gtcagatttacggttaaagtaacaggagaacccaaaccagaaattacatggtggtttgaa ggagaaatactgcaggatggagaagactatcaatatattgaaaggggagaaacttactgc ctttacttaccagaaactttcccagaagatggaggagagtatatgtgtaaagcagtcaac aataaaggatctgcagctagtacctgtattcttaccattgaaagtaagaattaa >gi568815597f:77905111_78116244|GENSCAN_predicted_peptide_2|616_aa MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGY GGQKRPLEDGDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQ EIMIPASKAGLVIGKGGETIKQLQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITD LLRSVQAGNPGGPGPGGRGRGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQ QIDYARQLIEEKIVKCSEDDDTGPKRFGNILSRRLSHVRQVDIERRAEDKDLISGPVNPL GPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAY PHWQQQAPPDPAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGPCQLL HPRKRPKLPFKNFNSVFCFVLLEQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAP PGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQTCTAAITVNLSVLNLIILDFQD CFGITNFKQFSDSEYE >gi568815597f:77905111_78116244|GENSCAN_predicted_CDS_2|1851_bp atggcagactattcaacagtgcctcccccctcttctggctcagctggtggcggtggtggc ggcggtggtggtggaggagttaacgacgctttcaaagatgcactgcagagagcccggcag attgcagcaaaaattggaggtgatgcagggacatcactgaattcaaatgactatggttat gggggacaaaaaagacctttagaagatggagacagtggtggccttccagaaaggtcctgt atgttaactggaacacctgaatctgtccagtcagcaaaacggttactggaccagattgtt gaaaaaggaagaccagctcctggcttccatcatggcgatggaccgggaaatgcagttcaa gaaatcatgattccagctagcaaggcaggattagtcattggaaaagggggagaaactatt aaacagcttcagcaagccaaggaaatggtgttagagttaattcgtgatcaaggcggtttc agagaagttcggaatgagtatgggtcaagaataggaggaaatgaagggatagatgtcccc attccaagatttgctgttggcattgtaataggaagaaatggagagatgatcaaaaaaata caaaatgatgctggtgttcgcattcagtttaagccagatgatgggacaacacccgaaagg atagcacaaataacaggacctccagaccgatgtcaacatgctgcagaaattattacagac cttcttcgaagtgttcaggctggtaatcctggtggacctggacctggtggtcgaggaaga ggaggtgaaaccataaaaagcataagccagcagtctggtgcaagaatagaacttcagaga aatcctccaccaaatgcagatcctaatatgaagttatttacaattcgtggcactccacaa cagatagactatgctcggcaactcatagaagaaaagattgtgaaatgttcagaagacgat gatacaggacccaagcggtttgggaatatattgtcaagacggttgtctcatgttaggcaa gtagatatagagagaagagctgaagataaggacctgatttctggcccagtaaatccttta gggccacctgtaccccatgggccccatggtgtcccaggcccccatggacctcctgggcct ccagggcctggaactccaatgggaccatacaaccctgcaccttataatcctggaccacca ggcccggctcctcatggtcctccagccccatatgctccccagggatggggaaatgcatat ccacactggcagcagcaggctcctcctgatccagctaaggcaggaacggatccaaattca gcagcttgggctgcttattacgctcactattatcaacagcaagcacagccaccaccagca gcccctgcaggtgcaccaactacaactcaaactaatggacaaggcccctgccagctcctg cacccaaggaaacggccaaaattgccttttaaaaactttaattctgttttttgttttgtt ttgcttgaacaaggagatcagcagaatccagccccagctggacaggttgattataccaag gcttgggaagagtactacaagaaaatgggtcaggcagttcctgctccgactggggctcct ccaggtggtcagccagattatagtgcagcctgggctgagtattatagacaacaagcagcc tattatgcccagacaagtccccagggaatgccacagcatcctccagcacctcagacctgt actgctgctataacagttaacctttctgttcttaatttgataatacttgatttccaagac tgtttcggcataactaattttaaacagttttcagatagtgaatatgagtag >gi568815597f:77905111_78116244|GENSCAN_predicted_peptide_3|338_aa MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGR DSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPVIHELRVSLEEIYSGCTKRMK ISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPADIVFIIKDKDH PKFKRDGSNIIYTAKISLREILPAASLPKLETKAQGVHADTAEYYQGSAKALVARSVDGN KCRLTCSPWIFISPPLSCPKPLGWCIPLPRRLLTKDLK >gi568815597f:77905111_78116244|GENSCAN_predicted_CDS_3|1017_bp atggggaaagactattattgcattttgggaattgagaaaggagcttcagatgaagatatt aaaaaggcttaccgaaaacaagccctcaaatttcatccggacaagaacaaatctcctcag gcagaggaaaaatttaaagaggtcgcagaagcttatgaagtattgagtgatcctaaaaag agagaaatatatgatcagtttggggaggaagggttgaaaggaggagcaggaggtactgat ggacaaggaggtaccttccggtacacctttcatggcgatcctcatgctacatttgctgca tttttcggagggtccaacccctttgaaattttctttggaagacgaatgggtggtggtaga gattctgaagaaatggaaatagatggtgatccttttagtgcctttggtttcagcatgaat ggatatccaagagacaggaattctgtggggccatcccgcctcaaacaagatcctccagtt attcatgaacttagagtatcacttgaagagatatatagtggttgtaccaaacggatgaag atttctcgaaaaaggctaaacgctgatggaaggagttacagatctgaggacaaaattctt accattgagattaaaaaagggtggaaagaaggcaccaaaattacttttccaagagaagga gatgaaacaccaaatagtattccagcagacattgtttttatcattaaagacaaagatcat ccaaaatttaaaagggatggatcaaatataatttatactgctaaaattagtttacgagag atattgcctgcagcttcactgccaaaattggagacaaaagctcagggtgtgcatgctgat actgcagagtattatcagggcagtgcaaaagccttggtagcaagaagtgttgatggaaac aaatgtagactgacttgtagtccttggatattcatttctcctcctctttcctgtccaaaa cccttgggctggtgtattcctctcccaaggaggcttctcactaaggatttaaagtaa >gi568815597f:77905111_78116244|GENSCAN_predicted_peptide_4|416_aa MMGRISTTIFLPAEKDTNAKNGKAKRRNKPKSLVTSKKKKKKKKQKKKKEEEEKRRRRRR RKEEEEKEGEEEEEEEEEQKKKPSRRDYTVLYSGRHTHFPPGRPRRTQHGIGFRAPGNAA QPSWAHRNTRGAARRGGEAGEPEHLAPYLRRRDFKRARDLGVELLDAGEALHSARGTTVR QLRLQGHLAGPRARAHLRCRPPPPPPGASDFAPRAPRRKVIQGHLHSASAAAVASQESQG NFPLGPHPASSFFIKSDNNTRACSLVRETATQGAKMVSLLECFNSPYGTKYFPEYAAKIP GKSTQKLSEVAKEYNLTRGSIPEEDAGKLDNTYAVFAPHGTLLVKHRKVHLLNTGVPGKM TFQESTMLSPGNSFSTFDTPYCRMSRGICYDTGLQSLHKSTHGKAASCWFIQGLSV >gi568815597f:77905111_78116244|GENSCAN_predicted_CDS_4|1251_bp atgatgggaagaatttctaccaccatcttcctgccagctgagaaagacaccaatgccaag aatggcaaagcaaaaagaagaaataaacctaagtccttggtgacatcgaaaaaaaaaaag aagaagaagaaacaaaagaagaagaaagaagaagaagaaaaaagaagaagaagaaggaga aggaaggaggaggaggagaaagaaggagaggaagaggaagaagaggaggaggagcaaaaa aaaaaaccttctagaagagactatacagttttatactctggaaggcacactcactttccc ccgggacgcccccggcggactcaacacggcatcggatttcgcgctccgggaaacgccgct caaccctcctgggcccacagaaatacgcgcggcgcggcgcggcgcggcggagaggcggga gagcctgagcacctggcgccttacctccgacggcgagatttcaaacgcgcccgcgatctg ggcgtagagctcctggatgctggagaagccctccactcggcccgtggcactaccgtgcgc cagctgcgccttcaggggcatcttgcagggccgagagcgcgggcccacctgcgctgccgt ccgccgcctcctccccccggcgcctcggactttgcgccccgggccccgcgcagaaaagta atacagggacacctgcactcagccagtgctgctgctgttgcttcccaggagagccagggc aactttccacttggccctcatccagcttcaagtttcttcatcaaatcagataacaacact cgagcttgtagccttgtccgggagacagcaacgcaaggagccaaaatggtttctttgttg gaatgctttaattctccatatggcacaaaatattttcctgaatatgcagcgaaaattcct ggtaaatccacacagaagctttctgaagtagcaaaggaatacaacctcactagaggttcc atccctgaagaggatgctgggaaattagataacacctatgctgtgtttgcacctcatgga actttactagtaaagcacagaaaggtccatctgcttaacactggtgttcctggaaaaatg acgtttcaagaatccacaatgttgagtccaggcaacagtttctccacatttgatactcct tactgcagaatgagtcggggcatctgctatgacactggtttgcagagcttgcacaaatct acacacggaaaggctgccagctgttggtttatccaggggctttcagtttga >gi568815597f:77905111_78116244|GENSCAN_predicted_peptide_5|253_aa MAPKGSSKQPSEEDLLLQDFSGNLSAKSFAIFFGNAFVVSAIPIWLYWRIWHMDLIQSAV FYSVMTLESTYLVAFAYKNVKFVLKHKVAQKREDTVSKEVTRKLSEADNRRMSRKEKDRI KDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFEV IGGGVTGNEAQESVENKYIKGLIYEDKDWAMKRQRGNMLSPKRSLVQIRSCEVTDLGLGL VGQTCLDRPAPQK >gi568815597f:77905111_78116244|GENSCAN_predicted_CDS_5|762_bp atggctcccaaaggcagctccaaacagccgtccgaggaggacctgctcctgcaggatttc agcggcaacctctcggccaagtccttcgcgatcttcttcgggaatgcgttcgtcgtgtct gccatccccatctggttatactggagaatatggcatatggatcttattcagtctgctgtt ttctatagtgtgatgaccctagaaagcacatatttggtagcctttgcatacaagaatgtt aaatttgttctcaagcacaaagtagcacagaagagggaggatactgtttccaaagaagtg actagaaaactttctgaagctgataatagaaggatgtctcggaaggagaaagatagaatt aaagatggtggtgttattgactcagttaaaacaatctgtgttggggatcatattgaatcc ataaatggagaaaatattgttgggtggcgtcactatgatgttgctaagaagttaaaggaa ttaaaaaaggaggaactctttactatgaagttaatagaacctaagaaggcatttgaggtt ataggtggtggcgtcacaggaaatgaagctcaagagtcagtagagaacaaatatatcaag ggccttatatatgaagacaaagactgggcaatgaagaggcagaggggtaacatgctcagc cccaagagaagccttgtgcagatccgttcatgtgaagtgactgatttagggcttggcctg gttggccagacgtgcttagacaggccagcaccccaaaagtag