Result of FASTA (omim) for pF1KB5554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5554, 298 aa
  1>>>pF1KB5554 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9544+/-0.000593; mu= 1.3655+/- 0.036
 mean_var=161.6034+/-33.050, 0's: 0 Z-trim(110.6): 177  B-trim: 669 in 2/51
 Lambda= 0.100890
 statistics sampled from 18736 (18957) to 18736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.222), width:  16
 Scan time:  7.120

The best scores are:                                      opt bits E(85289)
NP_005616 (OMIM: 602217) syntenin-1 isoform 1 [Hom ( 298) 1923 292.5 6.5e-79
NP_001007068 (OMIM: 602217) syntenin-1 isoform 1 [ ( 298) 1923 292.5 6.5e-79
XP_011515873 (OMIM: 602217) PREDICTED: syntenin-1  ( 318) 1923 292.6 6.9e-79
XP_016869216 (OMIM: 602217) PREDICTED: syntenin-1  ( 319) 1923 292.6 6.9e-79
NP_001007071 (OMIM: 602217) syntenin-1 isoform 3 [ ( 297) 1904 289.8 4.4e-78
NP_001007070 (OMIM: 602217) syntenin-1 isoform 3 [ ( 297) 1904 289.8 4.4e-78
NP_001317466 (OMIM: 602217) syntenin-1 isoform 4 [ ( 318) 1904 289.8 4.7e-78
NP_001007069 (OMIM: 602217) syntenin-1 isoform 2 [ ( 292) 1865 284.1 2.2e-76
XP_011519798 (OMIM: 602712) PREDICTED: amyloid bet ( 441)  214 43.9 0.00068
XP_011519797 (OMIM: 602712) PREDICTED: amyloid bet ( 453)  214 43.9 0.00069
XP_016877606 (OMIM: 602712) PREDICTED: amyloid bet ( 737)  214 44.1   0.001
XP_016877604 (OMIM: 602712) PREDICTED: amyloid bet ( 737)  214 44.1   0.001
XP_016877605 (OMIM: 602712) PREDICTED: amyloid bet ( 737)  214 44.1   0.001
XP_016877602 (OMIM: 602712) PREDICTED: amyloid bet ( 737)  214 44.1   0.001
XP_016877603 (OMIM: 602712) PREDICTED: amyloid bet ( 737)  214 44.1   0.001
NP_001123886 (OMIM: 602712) amyloid beta A4 precur ( 737)  214 44.1   0.001
XP_011519795 (OMIM: 602712) PREDICTED: amyloid bet ( 739)  214 44.1   0.001
XP_016877599 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877591 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_011519791 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877594 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877597 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877600 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877592 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877598 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_011519790 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877595 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877590 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_011519793 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877593 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_011519792 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_011519794 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877601 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
XP_016877596 (OMIM: 602712) PREDICTED: amyloid bet ( 749)  214 44.1   0.001
NP_005494 (OMIM: 602712) amyloid beta A4 precursor ( 749)  214 44.1   0.001
XP_005252025 (OMIM: 602414) PREDICTED: amyloid bet ( 826)  214 44.1  0.0011
XP_016870159 (OMIM: 602414) PREDICTED: amyloid bet ( 837)  214 44.1  0.0011
XP_011516919 (OMIM: 602414) PREDICTED: amyloid bet ( 837)  214 44.1  0.0011
NP_001154 (OMIM: 602414) amyloid beta A4 precursor ( 837)  214 44.1  0.0011
NP_004877 (OMIM: 604262) amyloid beta A4 precursor ( 575)  197 41.5  0.0047


>>NP_005616 (OMIM: 602217) syntenin-1 isoform 1 [Homo sa  (298 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1537.7  bits: 292.5 E(85289): 6.5e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
              250       260       270       280       290        

>>NP_001007068 (OMIM: 602217) syntenin-1 isoform 1 [Homo  (298 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1537.7  bits: 292.5 E(85289): 6.5e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
              250       260       270       280       290        

>>XP_011515873 (OMIM: 602217) PREDICTED: syntenin-1 isof  (318 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1537.3  bits: 292.6 E(85289): 6.9e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:21-318)

                                   10        20        30        40
pF1KB5                     MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIP
                           ::::::::::::::::::::::::::::::::::::::::
XP_011 MIKLWTNRDLHIIVMVNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIP
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KB5 HDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGND
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQ
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB5 INGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB5 IVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIK
              250       260       270       280       290       300

              290        
pF1KB5 RMAPSIMKSLMDHTIPEV
       ::::::::::::::::::
XP_011 RMAPSIMKSLMDHTIPEV
              310        

>>XP_016869216 (OMIM: 602217) PREDICTED: syntenin-1 isof  (319 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1537.3  bits: 292.6 E(85289): 6.9e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:22-319)

                                    10        20        30         
pF1KB5                      MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
                            :::::::::::::::::::::::::::::::::::::::
XP_016 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
              130       140       150       160       170       180

     160       170       180       190       200       210         
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
              190       200       210       220       230       240

     220       230       240       250       260       270         
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
              250       260       270       280       290       300

     280       290        
pF1KB5 KRMAPSIMKSLMDHTIPEV
       :::::::::::::::::::
XP_016 KRMAPSIMKSLMDHTIPEV
              310         

>>NP_001007071 (OMIM: 602217) syntenin-1 isoform 3 [Homo  (297 aa)
 initn: 1902 init1: 1401 opt: 1904  Z-score: 1522.8  bits: 289.8 E(85289): 4.4e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
     180       190       200       210       220       230         

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
     240       250       260       270       280       290       

>>NP_001007070 (OMIM: 602217) syntenin-1 isoform 3 [Homo  (297 aa)
 initn: 1902 init1: 1401 opt: 1904  Z-score: 1522.8  bits: 289.8 E(85289): 4.4e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
     180       190       200       210       220       230         

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
     240       250       260       270       280       290       

>>NP_001317466 (OMIM: 602217) syntenin-1 isoform 4 [Homo  (318 aa)
 initn: 1902 init1: 1401 opt: 1904  Z-score: 1522.4  bits: 289.8 E(85289): 4.7e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:22-318)

                                    10        20        30         
pF1KB5                      MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
                            :::::::::::::::::::::::::::::::::::::::
NP_001 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGN
               70        80        90       100        110         

     100       110       120       130       140       150         
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
     120       130       140       150       160       170         

     160       170       180       190       200       210         
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
     180       190       200       210       220       230         

     220       230       240       250       260       270         
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
     240       250       260       270       280       290         

     280       290        
pF1KB5 KRMAPSIMKSLMDHTIPEV
       :::::::::::::::::::
NP_001 KRMAPSIMKSLMDHTIPEV
     300       310        

>>NP_001007069 (OMIM: 602217) syntenin-1 isoform 2 [Homo  (292 aa)
 initn: 1821 init1: 1821 opt: 1865  Z-score: 1492.2  bits: 284.1 E(85289): 2.2e-76
Smith-Waterman score: 1865; 98.0% identity (98.0% similar) in 298 aa overlap (1-298:1-292)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       :::::::::::      :::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10              20        30        40        50    

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
          180       190       200       210       220       230    

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
          240       250       260       270       280       290  

>>XP_011519798 (OMIM: 602712) PREDICTED: amyloid beta A4  (441 aa)
 initn: 187 init1: 145 opt: 214  Z-score: 190.9  bits: 43.9 E(85289): 0.00068
Smith-Waterman score: 214; 28.0% identity (61.1% similar) in 157 aa overlap (131-284:282-438)

              110       120       130       140       150          
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL
                                     ::   ...  .. ..::.  : : .:::..
XP_011 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIM
             260       270       280       290       300       310 

     160       170       180        190       200        210       
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGE-KITMTIRDRPFERTITMHK-DSTGHVGFIFKNGK
       .::: . .:      . ..:   .. .. ..: . :   :. ... :   ..::  .:: 
XP_011 SINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI
             320       330       340       350       360       370 

       220       230       240       250       260       270       
pF1KB5 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEH
       : :... . : :.:. . : : :::::.:..    .:.. ::.:   . .  ::: .:. 
XP_011 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRL
             380       390       400       410       420       430 

       280       290        
pF1KB5 IIKRMAPSIMKSLMDHTIPEV
       .  . .:              
XP_011 LTGQETPLYI           
             440            

>>XP_011519797 (OMIM: 602712) PREDICTED: amyloid beta A4  (453 aa)
 initn: 187 init1: 145 opt: 214  Z-score: 190.7  bits: 43.9 E(85289): 0.00069
Smith-Waterman score: 214; 28.0% identity (61.1% similar) in 157 aa overlap (131-284:294-450)

              110       120       130       140       150          
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL
                                     ::   ...  .. ..::.  : : .:::..
XP_011 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIM
           270       280       290       300       310       320   

     160       170       180        190       200        210       
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGE-KITMTIRDRPFERTITMHK-DSTGHVGFIFKNGK
       .::: . .:      . ..:   .. .. ..: . :   :. ... :   ..::  .:: 
XP_011 SINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI
           330       340       350       360       370       380   

       220       230       240       250       260       270       
pF1KB5 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEH
       : :... . : :.:. . : : :::::.:..    .:.. ::.:   . .  ::: .:. 
XP_011 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRL
           390       400       410       420       430       440   

       280       290        
pF1KB5 IIKRMAPSIMKSLMDHTIPEV
       .  . .:              
XP_011 LTGQETPLYI           
           450              




298 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:52:52 2016 done: Fri Nov  4 03:52:53 2016
 Total Scan time:  7.120 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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