Result of FASTA (omim) for
pF1KB5251
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5251, 275 aa
1>>>pF1KB5251 275 - 275 aa - 275 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1442+/-0.000358; mu= 11.5115+/- 0.022
mean_var=90.9805+/-18.192, 0's: 0 Z-trim(114.4): 32 B-trim: 54 in 1/59
Lambda= 0.134462
statistics sampled from 24242 (24271) to 24242 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.285), width: 16
Scan time: 7.070
The best scores are: opt bits E(85289)
NP_057403 (OMIM: 616009) COP9 signalosome complex ( 275) 1730 345.5 6.3e-95
NP_001157565 (OMIM: 616009) COP9 signalosome compl ( 275) 1730 345.5 6.3e-95
NP_001157567 (OMIM: 616009) COP9 signalosome compl ( 275) 1730 345.5 6.3e-95
NP_001157566 (OMIM: 616009) COP9 signalosome compl ( 275) 1730 345.5 6.3e-95
XP_005253751 (OMIM: 616009) PREDICTED: COP9 signal ( 275) 1730 345.5 6.3e-95
XP_016860205 (OMIM: 616010) PREDICTED: COP9 signal ( 264) 994 202.7 5.8e-52
NP_073567 (OMIM: 616010) COP9 signalosome complex ( 264) 994 202.7 5.8e-52
XP_006712756 (OMIM: 616010) PREDICTED: COP9 signal ( 278) 864 177.5 2.4e-44
NP_001295310 (OMIM: 616010) COP9 signalosome compl ( 278) 864 177.5 2.4e-44
NP_001269879 (OMIM: 616010) COP9 signalosome compl ( 273) 851 175.0 1.3e-43
NP_001269878 (OMIM: 616010) COP9 signalosome compl ( 230) 793 163.7 2.8e-40
XP_016860206 (OMIM: 616010) PREDICTED: COP9 signal ( 157) 605 127.1 2e-29
NP_001269881 (OMIM: 616010) COP9 signalosome compl ( 157) 605 127.1 2e-29
NP_001269880 (OMIM: 616010) COP9 signalosome compl ( 209) 603 126.8 3.2e-29
XP_011509942 (OMIM: 616010) PREDICTED: COP9 signal ( 171) 475 101.9 8.2e-22
XP_011509940 (OMIM: 616010) PREDICTED: COP9 signal ( 171) 475 101.9 8.2e-22
XP_011509941 (OMIM: 616010) PREDICTED: COP9 signal ( 171) 475 101.9 8.2e-22
NP_001294858 (OMIM: 609641) eukaryotic translation ( 242) 157 40.3 0.0041
XP_011518142 (OMIM: 609641) PREDICTED: eukaryotic ( 311) 157 40.4 0.005
NP_006351 (OMIM: 609641) eukaryotic translation in ( 374) 157 40.5 0.0058
>>NP_057403 (OMIM: 616009) COP9 signalosome complex subu (275 aa)
initn: 1730 init1: 1730 opt: 1730 Z-score: 1825.3 bits: 345.5 E(85289): 6.3e-95
Smith-Waterman score: 1730; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
:::::::::::::::::::::::::::::::::::
NP_057 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
250 260 270
>>NP_001157565 (OMIM: 616009) COP9 signalosome complex s (275 aa)
initn: 1730 init1: 1730 opt: 1730 Z-score: 1825.3 bits: 345.5 E(85289): 6.3e-95
Smith-Waterman score: 1730; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
:::::::::::::::::::::::::::::::::::
NP_001 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
250 260 270
>>NP_001157567 (OMIM: 616009) COP9 signalosome complex s (275 aa)
initn: 1730 init1: 1730 opt: 1730 Z-score: 1825.3 bits: 345.5 E(85289): 6.3e-95
Smith-Waterman score: 1730; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
:::::::::::::::::::::::::::::::::::
NP_001 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
250 260 270
>>NP_001157566 (OMIM: 616009) COP9 signalosome complex s (275 aa)
initn: 1730 init1: 1730 opt: 1730 Z-score: 1825.3 bits: 345.5 E(85289): 6.3e-95
Smith-Waterman score: 1730; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
:::::::::::::::::::::::::::::::::::
NP_001 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
250 260 270
>>XP_005253751 (OMIM: 616009) PREDICTED: COP9 signalosom (275 aa)
initn: 1730 init1: 1730 opt: 1730 Z-score: 1825.3 bits: 345.5 E(85289): 6.3e-95
Smith-Waterman score: 1730; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
:::::::::::::::::::::::::::::::::::
XP_005 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
250 260 270
>>XP_016860205 (OMIM: 616010) PREDICTED: COP9 signalosom (264 aa)
initn: 990 init1: 896 opt: 994 Z-score: 1053.9 bits: 202.7 E(85289): 5.8e-52
Smith-Waterman score: 994; 57.7% identity (86.5% similar) in 267 aa overlap (1-267:1-262)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
:..: : ... :::.::::...:.::..:: :::::::::::::::.. ::.::::.
XP_016 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
:. ..::..:::::: ::.:. ..:: :. ::.:::.::..:.::...:::::.:::. :
XP_016 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
.::.:.::::.:::::.:...:.:::::: ::::. :::::...:.. :..::.::: :
XP_016 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::.:: :::.:: ::::.::.. .::.:.::.:.:::.:.: :....:. ::.:.
XP_016 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKAT----ASSSAQEMEQQLA
190 200 210 220 230
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
: :: : ..::::.:: :: ::: .:
XP_016 E-RECPPHAEQRQPTKKMSKVKGLVSSRH
240 250 260
>>NP_073567 (OMIM: 616010) COP9 signalosome complex subu (264 aa)
initn: 990 init1: 896 opt: 994 Z-score: 1053.9 bits: 202.7 E(85289): 5.8e-52
Smith-Waterman score: 994; 57.7% identity (86.5% similar) in 267 aa overlap (1-267:1-262)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
:..: : ... :::.::::...:.::..:: :::::::::::::::.. ::.::::.
NP_073 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
:. ..::..:::::: ::.:. ..:: :. ::.:::.::..:.::...:::::.:::. :
NP_073 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
.::.:.::::.:::::.:...:.:::::: ::::. :::::...:.. :..::.::: :
NP_073 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::.:: :::.:: ::::.::.. .::.:.::.:.:::.:.: :....:. ::.:.
NP_073 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKAT----ASSSAQEMEQQLA
190 200 210 220 230
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
: :: : ..::::.:: :: ::: .:
NP_073 E-RECPPHAEQRQPTKKMSKVKGLVSSRH
240 250 260
>>XP_006712756 (OMIM: 616010) PREDICTED: COP9 signalosom (278 aa)
initn: 874 init1: 854 opt: 864 Z-score: 917.3 bits: 177.5 E(85289): 2.4e-44
Smith-Waterman score: 864; 58.3% identity (88.5% similar) in 218 aa overlap (1-218:1-218)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
:..: : ... :::.::::...:.::..:: :::::::::::::::.. ::.::::.
XP_006 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
:. ..::..:::::: ::.:. ..:: :. ::.:::.::..:.::...:::::.:::. :
XP_006 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
.::.:.::::.:::::.:...:.:::::: ::::. :::::...:.. :..::.::: :
XP_006 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::.:: :::.:: ::::.::.. .::.:.:.: ...
XP_006 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEIACFQREKRDVPLLNLITTAFFWLPTSR
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
XP_006 RHSKPPHPPRLRRWSSSWLNGSVPLTLSRGSPPRRCPK
250 260 270
>>NP_001295310 (OMIM: 616010) COP9 signalosome complex s (278 aa)
initn: 874 init1: 854 opt: 864 Z-score: 917.3 bits: 177.5 E(85289): 2.4e-44
Smith-Waterman score: 864; 58.3% identity (88.5% similar) in 218 aa overlap (1-218:1-218)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
:..: : ... :::.::::...:.::..:: :::::::::::::::.. ::.::::.
NP_001 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
:. ..::..:::::: ::.:. ..:: :. ::.:::.::..:.::...:::::.:::. :
NP_001 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
.::.:.::::.:::::.:...:.:::::: ::::. :::::...:.. :..::.::: :
NP_001 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::.:: :::.:: ::::.::.. .::.:.:.: ...
NP_001 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEIACFQREKRDVPLLNLITTAFFWLPTSR
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
NP_001 RHSKPPHPPRLRRWSSSWLNGSVPLTLSRGSPPRRCPK
250 260 270
>>NP_001269879 (OMIM: 616010) COP9 signalosome complex s (273 aa)
initn: 861 init1: 841 opt: 851 Z-score: 903.8 bits: 175.0 E(85289): 1.3e-43
Smith-Waterman score: 851; 59.4% identity (88.7% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB5 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
:..: : ... :::.::::...:.::..:: :::::::::::::::.. ::.::::.
NP_001 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
:. ..::..:::::: ::.:. ..:: :. ::.:::.::..:.::...:::::.:::. :
NP_001 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
.::.:.::::.:::::.:...:.:::::: ::::. :::::...:.. :..::.::: :
NP_001 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
::.:: :::.:: ::::.::.. .::.:.:
NP_001 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEREKRDVPLLNLITTAFFWLPTSRRHSKP
190 200 210 220 230 240
250 260 270
pF1KB5 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
NP_001 PHPPRLRRWSSSWLNGSVPLTLSRGSPPRRCPK
250 260 270
275 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:30:46 2016 done: Fri Nov 4 03:30:47 2016
Total Scan time: 7.070 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]