Result of FASTA (omim) for pF1KB4600
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4600, 306 aa
  1>>>pF1KB4600 306 - 306 aa - 306 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8228+/-0.00037; mu= 8.1368+/- 0.024
 mean_var=245.6131+/-49.910, 0's: 0 Z-trim(122.0): 63  B-trim: 1157 in 1/58
 Lambda= 0.081837
 statistics sampled from 39431 (39502) to 39431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.463), width:  16
 Scan time:  9.080

The best scores are:                                      opt bits E(85289)
XP_011535013 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535012 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535011 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535010 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
NP_112604 (OMIM: 164020) heterogeneous nuclear rib ( 306) 1978 245.7 8.4e-65
NP_001070910 (OMIM: 164020) heterogeneous nuclear  ( 306) 1978 245.7 8.4e-65
XP_011535014 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
NP_001070911 (OMIM: 164020) heterogeneous nuclear  ( 293) 1224 156.7 5.2e-38
XP_016876742 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
NP_004491 (OMIM: 164020) heterogeneous nuclear rib ( 293) 1224 156.7 5.2e-38
XP_006720188 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
XP_016876741 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
XP_016868550 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
XP_016868554 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
XP_016868552 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
XP_016868551 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
NP_001093863 (OMIM: 614648) RNA-binding Raly-like  ( 291)  907 119.3 9.5e-27
XP_016868549 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
XP_016868548 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
NP_001093862 (OMIM: 614648) RNA-binding Raly-like  ( 291)  907 119.3 9.5e-27
XP_016868553 (OMIM: 614648) PREDICTED: RNA-binding ( 291)  907 119.3 9.5e-27
NP_776247 (OMIM: 614648) RNA-binding Raly-like pro ( 291)  907 119.3 9.5e-27
NP_001093861 (OMIM: 614648) RNA-binding Raly-like  ( 304)  907 119.3 9.7e-27
XP_016868565 (OMIM: 614648) PREDICTED: RNA-binding ( 235)  861 113.7 3.6e-25
XP_016868568 (OMIM: 614648) PREDICTED: RNA-binding ( 235)  861 113.7 3.6e-25
XP_016868566 (OMIM: 614648) PREDICTED: RNA-binding ( 235)  861 113.7 3.6e-25
XP_016868567 (OMIM: 614648) PREDICTED: RNA-binding ( 235)  861 113.7 3.6e-25
XP_016868562 (OMIM: 614648) PREDICTED: RNA-binding ( 248)  861 113.8 3.7e-25
XP_016868563 (OMIM: 614648) PREDICTED: RNA-binding ( 238)  857 113.3   5e-25
XP_016868561 (OMIM: 614648) PREDICTED: RNA-binding ( 251)  857 113.3 5.2e-25
XP_016868560 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
XP_016868559 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
NP_001274172 (OMIM: 614648) RNA-binding Raly-like  ( 280)  565 78.9 1.3e-14
XP_016868555 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
XP_016868558 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
XP_016868556 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
XP_016868557 (OMIM: 614648) PREDICTED: RNA-binding ( 280)  565 78.9 1.3e-14
XP_016868547 (OMIM: 614648) PREDICTED: RNA-binding ( 293)  565 78.9 1.4e-14
XP_011515764 (OMIM: 614648) PREDICTED: RNA-binding ( 227)  546 76.5 5.5e-14
XP_016868569 (OMIM: 614648) PREDICTED: RNA-binding ( 227)  546 76.5 5.5e-14
XP_016868571 (OMIM: 614648) PREDICTED: RNA-binding ( 224)  543 76.2 6.9e-14
XP_016868570 (OMIM: 614648) PREDICTED: RNA-binding ( 224)  543 76.2 6.9e-14
NP_057951 (OMIM: 614663) RNA-binding protein Raly  ( 306)  545 76.6 7.2e-14
XP_011526997 (OMIM: 614663) PREDICTED: RNA-binding ( 306)  545 76.6 7.2e-14
XP_005260391 (OMIM: 614663) PREDICTED: RNA-binding ( 306)  545 76.6 7.2e-14
XP_011526996 (OMIM: 614663) PREDICTED: RNA-binding ( 306)  545 76.6 7.2e-14
XP_016883220 (OMIM: 614663) PREDICTED: RNA-binding ( 306)  545 76.6 7.2e-14
XP_016868564 (OMIM: 614648) PREDICTED: RNA-binding ( 237)  543 76.2 7.2e-14
XP_005260393 (OMIM: 614663) PREDICTED: RNA-binding ( 290)  506 71.9 1.7e-12
NP_031393 (OMIM: 614663) RNA-binding protein Raly  ( 290)  506 71.9 1.7e-12


>>XP_011535013 (OMIM: 164020) PREDICTED: heterogeneous n  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
XP_011 NGEDDS
             

>>XP_011535012 (OMIM: 164020) PREDICTED: heterogeneous n  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
XP_011 NGEDDS
             

>>XP_011535011 (OMIM: 164020) PREDICTED: heterogeneous n  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
XP_011 NGEDDS
             

>>XP_011535010 (OMIM: 164020) PREDICTED: heterogeneous n  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
XP_011 NGEDDS
             

>>NP_112604 (OMIM: 164020) heterogeneous nuclear ribonuc  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
NP_112 NGEDDS
             

>>NP_001070910 (OMIM: 164020) heterogeneous nuclear ribo  (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1284.4  bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
NP_001 NGEDDS
             

>>XP_011535014 (OMIM: 164020) PREDICTED: heterogeneous n  (293 aa)
 initn: 1224 init1: 1224 opt: 1224  Z-score: 803.5  bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::::::
XP_011 NGEDDS
       290   

>>NP_001070911 (OMIM: 164020) heterogeneous nuclear ribo  (293 aa)
 initn: 1224 init1: 1224 opt: 1224  Z-score: 803.5  bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::::::
NP_001 NGEDDS
       290   

>>XP_016876742 (OMIM: 164020) PREDICTED: heterogeneous n  (293 aa)
 initn: 1224 init1: 1224 opt: 1224  Z-score: 803.5  bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
XP_016 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::::::
XP_016 NGEDDS
       290   

>>NP_004491 (OMIM: 164020) heterogeneous nuclear ribonuc  (293 aa)
 initn: 1224 init1: 1224 opt: 1224  Z-score: 803.5  bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
NP_004 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::::::
NP_004 NGEDDS
       290   




306 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:03:26 2016 done: Fri Nov  4 03:03:27 2016
 Total Scan time:  9.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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