Result of FASTA (ccds) for pF1KB4600
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4600, 306 aa
  1>>>pF1KB4600 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7957+/-0.000887; mu= 7.9818+/- 0.054
 mean_var=221.3924+/-44.061, 0's: 0 Z-trim(114.1): 28  B-trim: 0 in 0/56
 Lambda= 0.086197
 statistics sampled from 14691 (14715) to 14691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.452), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14        ( 306) 1978 257.9 6.9e-69
CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14        ( 293) 1224 164.1 1.1e-40
CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1     ( 293) 1105 149.3 3.2e-36
CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1     ( 293) 1086 147.0 1.7e-35
CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1     ( 293) 1067 144.6 8.5e-35
CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1  ( 293) 1067 144.6 8.5e-35
CCDS55253.1 RALYL gene_id:138046|Hs108|chr8        ( 291)  907 124.7 8.3e-29
CCDS55252.1 RALYL gene_id:138046|Hs108|chr8        ( 304)  907 124.7 8.5e-29
CCDS75760.1 RALYL gene_id:138046|Hs108|chr8        ( 280)  565 82.2 5.1e-16
CCDS13230.1 RALY gene_id:22913|Hs108|chr20         ( 306)  545 79.7   3e-15
CCDS13229.1 RALY gene_id:22913|Hs108|chr20         ( 290)  506 74.9 8.5e-14
CCDS75761.1 RALYL gene_id:138046|Hs108|chr8        ( 218)  480 71.5 6.6e-13


>>CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14             (306 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1350.2  bits: 257.9 E(32554): 6.9e-69
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
              250       260       270       280       290       300

             
pF1KB4 NGEDDS
       ::::::
CCDS41 NGEDDS
             

>>CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14             (293 aa)
 initn: 1224 init1: 1224 opt: 1224  Z-score: 843.7  bits: 164.1 E(32554): 1.1e-40
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS45 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::::::
CCDS45 NGEDDS
       290   

>>CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1          (293 aa)
 initn: 1104 init1: 1104 opt: 1105  Z-score: 763.7  bits: 149.3 E(32554): 3.2e-36
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       :::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS30 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       .:::::::::::::::.::.:::::::::::::.:::::::::::::             
CCDS30 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       :::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS30 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       :::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
CCDS30 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       :.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
CCDS30 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::.:::
CCDS30 NGQDDS
       290   

>>CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1          (293 aa)
 initn: 1085 init1: 1085 opt: 1086  Z-score: 750.9  bits: 147.0 E(32554): 1.7e-35
Smith-Waterman score: 1640; 84.6% identity (92.5% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       :::::::: ::.:.:::::::::::::::::::::::::::::.::::::::::::: .:
CCDS76 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       .:::::::::::::::.::  ::::::::::::.:::::::::::::             
CCDS76 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       :::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS76 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       :::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
CCDS76 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       :.:::::.:::::::::.::::::: ::::::::.::.::.:::..::.::::::.:::.
CCDS76 SMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::.:::
CCDS76 NGQDDS
       290   

>>CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1          (293 aa)
 initn: 1066 init1: 1066 opt: 1067  Z-score: 738.2  bits: 144.6 E(32554): 8.5e-35
Smith-Waterman score: 1642; 84.6% identity (92.2% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       :::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS72 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       .:::::::::::::::.::.:::::::::::::.:::::::::::::             
CCDS72 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::..:::::  :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS72 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       :::::::::::::::::.::::::::::::::::::::::. ::.::.:: ::::::.::
CCDS72 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       : :::.:.::::::::::::.:::::: ::::::.::.:::::::::: ::::::::: :
CCDS72 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::.:::
CCDS72 NGQDDS
       290   

>>CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1       (293 aa)
 initn: 1066 init1: 1066 opt: 1067  Z-score: 738.2  bits: 144.6 E(32554): 8.5e-35
Smith-Waterman score: 1642; 84.6% identity (92.2% similar) in 306 aa overlap (1-306:1-293)

               10        20        30        40        50        60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
       :::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS76 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
       .:::::::::::::::.::.:::::::::::::.:::::::::::::             
CCDS76 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
       ::::::..:::::  :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS76 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
       :::::::::::::::::.::::::::::::::::::::::. ::.::.:: ::::::.::
CCDS76 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
       : :::.:.::::::::::::.:::::: ::::::.::.:::::::::: ::::::::: :
CCDS76 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA
       230       240       250       260       270       280       

             
pF1KB4 NGEDDS
       ::.:::
CCDS76 NGQDDS
       290   

>>CCDS55253.1 RALYL gene_id:138046|Hs108|chr8             (291 aa)
 initn: 727 init1: 504 opt: 907  Z-score: 630.7  bits: 124.7 E(32554): 8.3e-29
Smith-Waterman score: 907; 53.9% identity (75.4% similar) in 293 aa overlap (3-284:8-291)

                    10        20        30        40        50     
pF1KB4      MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
              ::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS55 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
       ::..::.::::::::..:.:::: ::::.:.:::  : : : ::  . .:    .  :  
CCDS55 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----RLESKE
               70        80        90       100       110          

          120       130        140       150       160       170   
pF1KB4 PLLS-SSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGF
       :.:: ... .:::. :: .:.:...: .::::::   :::.: :: ::. .:.::::. :
CCDS55 PFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVF
        120       130       140       150          160       170   

           180          190       200       210       220       230
pF1KB4 NSKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKN
       . :.:.:..   : ..:::.:.::.::::::::: :.::::  ::::::.:. .:  .:.
CCDS55 SMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK
           180       190       200       210       220       230   

                   240       250        260       270       280    
pF1KB4 DKSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK
       .  :     .:.  : .    :  .  .::: : :. :  : ...: .:: : . .  ::
CCDS55 QLEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
           240       250         260       270       280       290 

          290       300      
pF1KB4 DDEKEAEEGEDDRDSANGEDDS

>>CCDS55252.1 RALYL gene_id:138046|Hs108|chr8             (304 aa)
 initn: 727 init1: 504 opt: 907  Z-score: 630.4  bits: 124.7 E(32554): 8.5e-29
Smith-Waterman score: 907; 53.9% identity (75.4% similar) in 293 aa overlap (3-284:21-304)

                                 10        20        30        40  
pF1KB4                   MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGK
                           ::::::.::.:.::::::::::: .::: :.:::::::::
CCDS55 MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
               10        20        30        40        50        60

             50        60        70        80        90       100  
pF1KB4 IVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAA
       :::::::::.:::::..::.::::::::..:.:::: ::::.:.:::  : : : ::  .
CCDS55 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
               70        80        90       100       110       120

            110        120       130        140       150       160
pF1KB4 EMYGSVTEHPSPSPLLS-SSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQR
        .:    .  :  :.:: ... .:::. :: .:.:...: .::::::   :::.: :: :
CCDS55 ALY----RLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPR
                  130       140       150       160          170   

              170       180          190       200       210       
pF1KB4 VSGNTSRRGKSGFNSKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKI
       :. .:.::::. :. :.:.:..   : ..:::.:.::.::::::::: :.::::  ::::
CCDS55 VAVTTTRRGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKI
           180       190       200       210       220       230   

       220       230            240       250        260       270 
pF1KB4 EKEQSKQAVEMKNDKSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDD
       ::.:. .:  .:..  :     .:.  : .    :  .  .::: : :. :  : ...: 
CCDS55 EKQQKAEAEAQKKQLEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDF
           240       250       260         270       280       290 

             280       290       300      
pF1KB4 NEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
       .:: : . .  ::                      
CCDS55 DEDGGHELFLQIK                      
             300                          

>>CCDS75760.1 RALYL gene_id:138046|Hs108|chr8             (280 aa)
 initn: 723 init1: 500 opt: 565  Z-score: 401.0  bits: 82.2 E(32554): 5.1e-16
Smith-Waterman score: 884; 53.1% identity (73.6% similar) in 292 aa overlap (3-284:8-280)

                    10        20        30        40        50     
pF1KB4      MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
              ::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS75 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
       ::..::.::::::::..:.:::: ::::.:.:::  : : : ::  . .:          
CCDS75 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----------
               70        80        90       100       110          

         120       130        140       150       160       170    
pF1KB4 PLLSSSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN
           :.. .:::. :: .:.:...: .::::::   :::.: :: ::. .:.::::. :.
CCDS75 ----SGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFS
                  120       130          140       150       160   

          180          190       200       210       220       230 
pF1KB4 SKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKND
        :.:.:..   : ..:::.:.::.::::::::: :.::::  ::::::.:. .:  .:..
CCDS75 MKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQ
           170       180       190       200       210       220   

                  240       250        260       270       280     
pF1KB4 KSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIKD
         :     .:.  : .    :  .  .::: : :. :  : ...: .:: : . .  :: 
CCDS75 LEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 
           230       240         250       260       270       280 

         290       300      
pF1KB4 DEKEAEEGEDDRDSANGEDDS

>>CCDS13230.1 RALY gene_id:22913|Hs108|chr20              (306 aa)
 initn: 672 init1: 479 opt: 545  Z-score: 387.1  bits: 79.7 E(32554): 3e-15
Smith-Waterman score: 723; 44.6% identity (68.7% similar) in 316 aa overlap (2-302:7-303)

                    10        20        30        40        50     
pF1KB4      MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
             :::::::.::.:.::::::::::: .:::::::.::::::...:::::::.:::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
       :: :::.::::: ::.::..:::.::::.:.::: .: : :.::.:. .:          
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY----------
               70        80        90        100                   

         120       130        140       150       160       170    
pF1KB4 PLLSSSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG--
           :.. .:::. :: .:::...: .:. : : . ::: : :: ::.    :: :..  
CCDS13 ----SGYIFDYDYYRDDFYDRLFDYRGRLSPVP-VPRAV-PVKRPRVTVPLVRRVKTNVP
         110       120       130        140        150       160   

               180       190       200       210       220         
pF1KB4 ---FNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAV-EM
          :  ...   :: . :::...::::: ::::::...:.::  ::.:  ::. .   . 
CCDS13 VKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKK
           170       180       190       200       210       220   

      230       240       250               260       270       280
pF1KB4 KNDKSEEEQSSSSVKKDETNVKMESEGGA--------DDSAEEGDLLDDDDNEDRGDDQL
       :.: .    ....  .   .    . ::.        . ..: :    .  ..: ::.. 
CCDS13 KGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-
           230       240       250       260       270       280   

              290       300      
pF1KB4 ELIKDDEKEAEEGEDDRDSANGEDDS
        :.  .:.: :...:  :. .:    
CCDS13 GLLTHSEEELEHSQDT-DADDGALQ 
            290        300       




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:03:25 2016 done: Fri Nov  4 03:03:25 2016
 Total Scan time:  2.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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