GENSCAN 1.0 Date run: 4-Nov-116 Time: 03:01:14 Sequence gi568815596r:216576754_216794775 : 218022 bp : 46.95% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.06 PlyA - 807 802 6 1.05 1.05 Term - 8092 7891 202 0 1 67 50 82 0.030 -0.84 1.04 Intr - 12544 12459 86 1 2 86 110 54 0.155 6.02 1.03 Intr - 14330 14221 110 0 2 95 1 90 0.111 1.00 1.02 Intr - 17528 17375 154 2 1 10 69 139 0.419 3.85 1.01 Init - 28954 28847 108 1 0 79 56 86 0.501 4.72 1.00 Prom - 29585 29546 40 -7.76 2.02 PlyA - 30272 30267 6 1.05 2.01 Sngl - 34173 33589 585 0 0 113 40 839 0.564 77.79 2.00 Prom - 53899 53860 40 -5.36 3.00 Prom + 55827 55866 40 -3.36 3.01 Init + 56771 57212 442 1 1 92 97 747 0.776 70.23 3.02 Intr + 83804 84033 230 0 2 101 56 362 0.892 31.89 3.03 Intr + 85105 85245 141 0 0 83 99 226 0.961 23.75 3.04 Term + 87187 87351 165 0 0 128 41 221 0.965 19.32 3.05 PlyA + 88076 88081 6 1.05 4.04 PlyA - 91377 91372 6 1.05 4.03 Term - 92921 92759 163 1 1 93 54 120 0.784 6.51 4.02 Intr - 93075 93030 46 1 1 58 94 16 0.416 -3.33 4.01 Init - 94196 94127 70 2 1 72 40 111 0.894 5.91 4.00 Prom - 96169 96130 40 -9.26 5.05 PlyA - 98822 98817 6 1.05 5.04 Term - 100129 99998 132 1 0 99 44 302 0.997 24.99 5.03 Intr - 101478 101359 120 0 0 105 98 138 0.999 17.19 5.02 Intr - 102326 102097 230 0 2 124 57 358 0.996 33.89 5.01 Init - 118022 117686 337 2 1 80 97 718 0.895 67.34 5.00 Prom - 122015 121976 40 -6.16 6.00 Prom + 126715 126754 40 -4.56 6.01 Init + 128193 128282 90 2 0 59 59 77 0.443 2.39 6.02 Intr + 132175 132295 121 0 1 81 56 52 0.266 1.37 6.03 Intr + 134945 134997 53 0 2 94 53 31 0.378 -1.17 6.04 Intr + 135627 135716 90 2 0 110 100 33 0.790 6.89 6.05 Term + 152721 152831 111 2 0 86 49 52 0.052 -0.34 6.06 PlyA + 158696 158701 6 1.05 7.00 Prom + 165354 165393 40 -1.96 7.01 Init + 174070 174252 183 0 0 44 94 90 0.216 4.32 7.02 Term + 201313 201366 54 0 0 34 49 109 0.120 -0.84 7.03 PlyA + 201837 201842 6 1.05 8.02 PlyA - 202080 202075 6 1.05 8.01 Sngl - 209377 209162 216 1 0 91 49 220 0.861 13.57 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_1|219_aa MAGFSPPSGGPPVIYQFLQSATATWKPEGKGTSEMQVKVRQKINSQGKYDEDKKRLVDLE NEVAVMILPWHYQSDLDGNQVTKEGGMVRGHKKPVTPSPGTVPTSHTDRCFTPPLLGSTS YSPWSFGQLAPEIFQWPIREQAGRAVTPAMEVSSALTAARVHSHLWSLHSGAHESASTQA PLYSSMQLKLPAHEQQPEDVPPVSDQAINALSPLSGLTS >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_1|660_bp atggccggcttctcccctccttctggtggccctccagtgatttaccagttcctccaatca gccacagctacctggaagccagagggcaaaggcacctcagaaatgcaggttaaagtgagg caaaagataaacagtcaaggaaaatatgatgaggataagaaaaggctagtggatttggaa aatgaggtggcagtgatgatcttgccatggcactaccagagtgacctggatggaaaccag gtcacaaaggaaggaggaatggtacgtggccataagaaacccgtgacaccctcccctgga actgtacccacgtcccacacggacagatgcttcactcctccacttcttggcagtacttcc tacagcccctggagctttggccagctagccccagaaatcttccagtggcccatcagagag caagctggcagagctgtcactcccgccatggaagtcagctcagccctgactgctgcccga gtccactcccatctgtggagcctccactcaggagcccatgaatcagcttccacccaagct ccactctacagctccatgcagctcaaactacctgctcatgaacaacaaccagaagatgtt cctcccgtctcagatcaagccatcaatgccctttctcctctctctggtctcacttcttga >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_2|194_aa MAMKGKNRVAIAADRHFGIQAQMVTTDFQEIFPMGGWLYIGLAGLATDVQRVAQCLKFQL NLYELKEGQQIKPYTFTSMVANFLYEKHFGPYYTDPVIAGLDLKTFKPFSCSLDLIGFPM VTDDFVVNGSYAEQMYGMCESLWEPNMDPEHPFETISPAMLNAVDWGAGSGMGVIIHITK KDKITTRTLKAQMD >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_2|585_bp atggccatgaaggggaagaaccgtgtggccatcgctgcagacaggcacttcgggatccag gcccagatggtgaccacggacttccaggagatctttcccatgggtggttggttgtacatc ggtctggccgggcttgccactgacgtccagagagttgcccagtgcctcaagttccagctg aacctatatgagttgaaggaaggtcagcagatcaaaccttataccttcacgagcatggtg gccaacttcttgtatgagaaacattttggcccctactacactgatccagtcattgctggt ttggacctgaagacctttaagcccttcagttgctctctagacctcatcggcttccccatg gtgactgatgactttgtggtcaatggcagctatgccgaacaaatgtacggaatgtgtgag tccctctgggaacccaacatggatccagaacacccgtttgaaaccatctccccagccatg ctgaatgctgtggactggggtgcagggtcaggcatgggagtcatcatccacatcaccaag aaggacaaaatcaccaccaggacactgaaggcccaaatggactaa >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_3|325_aa MLPRVGCPALPLPPPPLLPLLLLLLGASGGGGGARAEVLFRCPPCTPERLAACGPPPVAP PAAVAAVAGGARMPCAELVREPGCGCCSVCARLEGEACGVYTPRCGQGLRCYPHPGSELP LQALVMGEGTCEKRRDAEYGASPEQVADNGDDHSEGGLVENHVDSTMNMLGGGGSAGRKP LKSGMKELAVFREKVTEQHRQMGKGGKHHLGLEEPKKLRPPPARTPCQQELDQVLERIST MRLPDERGPLEHLYSLHIPNCDKHGLYNLKQCKMSLNGQRGECWCVNPNTGKLIQGAPTI RGDPECHLFYNEQQEARGVHTQRMQ >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_3|978_bp atgctgccgagagtgggctgccccgcgctgccgctgccgccgccgccgctgctgccgctg ctgctgctgctactgggcgcgagtggcggcggcggcggggcgcgcgcggaggtgctgttc cgctgcccgccctgcacacccgagcgcctggccgcctgcgggcccccgccggttgcgccg cccgccgcggtggccgcagtggccggaggcgcccgcatgccatgcgcggagctcgtccgg gagccgggctgcggctgctgctcggtgtgcgcccggctggagggcgaggcgtgcggcgtc tacaccccgcgctgcggccaggggctgcgctgctatccccacccgggctccgagctgccc ctgcaggcgctggtcatgggcgagggcacttgtgagaagcgccgggacgccgagtatggc gccagcccggagcaggttgcagacaatggcgatgaccactcagaaggaggcctggtggag aaccacgtggacagcaccatgaacatgttgggcgggggaggcagtgctggccggaagccc ctcaagtcgggtatgaaggagctggccgtgttccgggagaaggtcactgagcagcaccgg cagatgggcaagggtggcaagcatcaccttggcctggaggagcccaagaagctgcgacca ccccctgccaggactccctgccaacaggaactggaccaggtcctggagcggatctccacc atgcgccttccggatgagcggggccctctggagcacctctactccctgcacatccccaac tgtgacaagcatggcctgtacaacctcaaacagtgcaagatgtctctgaacgggcagcgt ggggagtgctggtgtgtgaaccccaacaccgggaagctgatccagggagcccccaccatc cggggggaccccgagtgtcatctcttctacaatgagcagcaggaggctcgcggggtgcac acccagcggatgcagtag >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_4|92_aa MALSGYRGPAVEVEEEEVEDALGANTLTFSLSEKTKASSPFLHAPHLLVGPPRINHPISL CVGDRGNGEDGIERNRGLQTELMDLAQELTSG >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_4|279_bp atggctctctcaggctaccggggcccagcagtggaggtagaggaggaggaggtggaggat gcattaggagcaaacacccttaccttctccctatcagagaaaaccaaggccagcagcccc ttcctgcacgctccccacctgcttgtcggccccccacgcatcaaccatcccatctccctc tgtgttggtgacagaggaaatggggaggacggaatagagaggaaccgcggcctgcagaca gaactgatggaccttgctcaagaattgacatcaggatga >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_5|272_aa MVLLTAVLLLLAAYAGPAQSLGSFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCA LAEGQSCGVYTERCAQGLRCLPRQDEEKPLHALLHGRGVCLNEKSYREQVKIERDSREHE EPTTSEMAEETYSPKIFRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRIISA PEMRQESEQGPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGI CWCVDKYGMKLPGMEYVDGDFQCHTFDSSNVE >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_5|819_bp atggtgttgctcaccgcggtcctcctgctgctggccgcctatgcggggccggcccagagc ctgggctccttcgtgcactgcgagccctgcgacgagaaagccctctccatgtgccccccc agccccctgggctgcgagctggtcaaggagccgggctgcggctgctgcatgacctgcgcc ctggccgaggggcagtcgtgcggcgtctacaccgagcgctgcgcccaggggctgcgctgc ctcccccggcaggacgaggagaagccgctgcacgccctgctgcacggccgcggggtttgc ctcaacgaaaagagctaccgcgagcaagtcaagatcgagagagactcccgtgagcacgag gagcccaccacctctgagatggccgaggagacctactcccccaagatcttccggcccaaa cacacccgcatctccgagctgaaggctgaagcagtgaagaaggaccgcagaaagaagctg acccagtccaagtttgtcgggggagccgagaacactgcccacccccggatcatctctgca cctgagatgagacaggagtctgagcagggcccctgccgcagacacatggaggcttccctg caggagctcaaagccagcccacgcatggtgccccgtgctgtgtacctgcccaattgtgac cgcaaaggattctacaagagaaagcagtgcaaaccttcccgtggccgcaaacgtggcatc tgctggtgcgtggacaagtacgggatgaagctgccaggcatggagtacgttgacggggac tttcagtgccacaccttcgacagcagcaacgttgagtga >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_6|154_aa MKAGSLTAVFTIALPRAYKSNRHIVDAQIFTYTDGALPQALAIRRLVSLSHTLRQQQEEK DAASLKPIGKCTSGIGTKNNNRKTHSFKGASLSALNASCSITVTAQGRTPDPIGIHPRSP LDVKWETKEWEVKGKINWAGKFGKAMKRLSSFEN >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_6|465_bp atgaaagcaggcagtttgacggctgtgttcaccattgcattgcccagggcctacaagagc aaccgacatatagtagatgctcaaatatttacttacacggatggggctctgccacaggca ttggctataagaaggttggtctctcttagccatacgttgcgacagcaacaggaagagaaa gatgcggcctcgttaaagcccattgggaaatgcacttctggtataggaacaaagaacaac aacagaaaaacccactcctttaaaggagcgagcctcagtgctttgaacgcctcctgctcc atcacagtgactgctcaaggcaggacacctgatcctatcggaatccacccacggtctcct ttagatgtgaagtgggaaacaaaggaatgggaagtgaaaggaaagataaattgggcaggg aaatttgggaaggccatgaaaaggctctcgagctttgaaaattag >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_7|78_aa MKLDPPLSPYTKVNSRLIKDLNLRPETIKLLEDNIGKTLLDIGLDKNFMTKNPKANAIKT KLEDSKVGDDLMAVAGVI >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_7|237_bp atgaaactggatcctcctctctcaccttatacaaaagtcaactcaagattgattaaggac ttaaacctaagacctgaaactataaaacttctagaagataacattggaaaaacccttcta gacattggcttagacaagaatttcatgaccaagaacccaaaagcaaatgcaataaaaaca aagctagaagactcgaaagttggtgacgacttgatggctgtggctggtgtcatctga >gi568815596r:216576754_216794775|GENSCAN_predicted_peptide_8|71_aa MGDKKKKGRSAINEVVTEEYIIDIHKCIHGGASRSVSLRHSERSRNLPRRRWQFQICTLM PVLTKLSEPKE >gi568815596r:216576754_216794775|GENSCAN_predicted_CDS_8|216_bp atgggtgacaagaagaaaaagggccgttctgccatcaatgaggtggtgactgaagaatac atcatcgacattcacaagtgcatccatggaggggcttcaagaagcgtgtctctcaggcac tcagagagatccagaaatttgccacgaaggagatggcaattccagatatgcacactgatg ccagtcttaacaaagctgtccgagccaaaggaataa