GENSCAN 1.0 Date run: 4-Nov-116 Time: 02:45:51 Sequence gi568815591r:13795869_14089052 : 293184 bp : 37.13% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 5327 5423 97 0 1 100 61 53 0.192 1.95 1.02 Intr + 7252 7324 73 1 1 59 91 81 0.258 3.99 1.03 Term + 9154 9375 222 0 0 17 55 158 0.122 1.33 1.04 PlyA + 9462 9467 6 1.05 2.00 Prom + 10703 10742 40 -8.15 2.01 Sngl + 11715 12317 603 2 0 36 43 390 0.960 25.24 2.02 PlyA + 12545 12550 6 1.05 3.00 Prom + 12714 12753 40 -6.15 3.01 Sngl + 13986 15857 1872 2 0 33 37 577 0.937 40.81 3.02 PlyA + 16413 16418 6 1.05 4.04 PlyA - 19346 19341 6 1.05 4.03 Term - 20463 20419 45 0 0 115 38 38 0.823 -2.27 4.02 Intr - 21024 20888 137 1 2 84 92 138 0.852 13.17 4.01 Init - 29853 29475 379 0 1 52 22 131 0.054 0.01 4.00 Prom - 33616 33577 40 -4.45 5.05 PlyA - 34269 34264 6 1.05 5.04 Term - 35089 34960 130 0 1 46 32 143 0.901 1.17 5.03 Intr - 38653 38435 219 0 0 35 62 127 0.020 1.30 5.02 Intr - 63155 63067 89 2 2 99 68 57 0.612 2.65 5.01 Init - 63963 63922 42 0 0 82 61 55 0.296 2.67 5.00 Prom - 66945 66906 40 -5.45 6.00 Prom + 72849 72888 40 -3.75 6.01 Sngl + 75940 76314 375 0 0 49 41 347 0.406 21.99 6.02 PlyA + 77038 77043 6 1.05 7.03 PlyA - 77641 77636 6 1.05 7.02 Term - 86000 85869 132 2 0 -3 42 154 0.264 -1.19 7.01 Init - 87362 87162 201 2 0 45 11 156 0.213 2.52 7.00 Prom - 89662 89623 40 -2.25 8.12 PlyA - 90281 90276 6 1.05 8.11 Term - 100219 99998 222 1 0 70 41 307 0.999 20.13 8.10 Intr - 104971 104870 102 1 0 88 105 95 0.996 10.65 8.09 Intr - 110731 110562 170 2 2 11 88 219 0.333 12.94 8.08 Intr - 113832 113764 69 1 0 114 78 58 0.328 5.64 8.07 Intr - 135881 135634 248 1 2 96 96 206 0.977 18.38 8.06 Intr - 140028 139840 189 2 0 58 91 151 0.789 10.18 8.05 Intr - 143378 143249 130 0 1 70 103 61 0.771 4.63 8.04 Intr - 181612 181559 54 2 0 128 81 56 0.954 6.93 8.03 Intr - 190817 190770 48 0 0 94 116 25 0.900 3.63 8.02 Intr - 192305 192218 88 2 1 76 100 42 0.986 2.82 8.01 Init - 193184 193140 45 2 0 85 82 44 0.930 4.24 8.00 Prom - 193229 193190 40 -6.25 9.03 PlyA - 193484 193479 6 1.05 9.02 Term - 193970 193807 164 0 2 32 49 195 0.643 7.12 9.01 Init - 194351 194276 76 2 1 78 83 49 0.432 4.70 9.00 Prom - 200388 200349 40 -4.85 10.07 PlyA - 201235 201230 6 1.05 10.06 Term - 203355 202980 376 2 1 100 38 182 0.291 7.63 10.05 Intr - 241767 241587 181 1 1 103 69 32 0.014 0.80 10.04 Intr - 255440 255337 104 1 2 46 94 64 0.021 1.70 10.03 Intr - 271723 271350 374 1 2 50 40 281 0.240 12.43 10.02 Intr - 274977 274844 134 1 2 -41 100 59 0.043 -6.36 10.01 Init - 275512 275296 217 1 1 79 4 291 0.106 18.70 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Sngl + 12807 13343 537 2 0 44 42 263 0.891 13.13 S.002 Init + 168129 168205 77 2 2 94 86 53 0.955 6.31 S.003 Sngl - 275512 275288 225 1 0 79 42 299 0.883 19.29 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_1|130_aa XLGTDGAPPDSEESNVRFIVLHRKSKIKQQYRRCGRQDGRIERALVCSFRRDQCRRQQDR PTFKFRKYRAHHKDTPREEQPQDIIVRFSKVEMKEKMLRAAREKRPVTDKGKSTRLAADL LGETLQARRE >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_1|393_bp ngcctgggaacagatggtgcaccacctgactcagaagagtctaatgtaagattcattgtg cttcacaggaaatcaaagatcaagcaacaatacagaaggtgtggccggcaagatggacga atagaaagagctcttgtctgcagcttccggagagatcaatgcagaaggcagcaagacagg ccaacattcaaattcaggaaatacagagcacaccacaaagatactccccgagaagagcaa ccccaagacataatcgtcagattcagcaaggttgaaatgaaggaaaaaatgttaagggca gccagagagaaacgtccggttaccgacaaagggaagtccaccagactagcagcagatctc ttgggagaaaccctacaagccagaagagagtga >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_2|200_aa MKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENMLQDIIQENFPNLARQANVQIQ EIQRTPQRYSSRRATPRHTIVRFTKVEMKEKMLRAAREKGRVALKGKPIRLTADLSAETL QARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPARKELLK EALNMERNNRYQPLQSHAKM >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_2|603_bp atgaaaagaaatgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaatcta cgtctgattggtgtacctgaaagtgatggggagaatggaaccaagttggaaaacatgctg caggatattatccaggagaacttccccaatctagcaaggcaggccaacgttcagattcag gaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacacaatt gtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggt cgggttgccctcaaagggaagcccatcagactaacagcggatctctcggcagaaacccta caagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaaccc agaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttaca gacaagcaaatgctgagagattttgtcaccaccaggcctgcccgaaaagagctcctgaag gaagcgctaaatatggaaaggaacaaccggtaccagccgctgcaaagtcatgccaaaatg taa >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_3|623_aa MNIDAKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGCFNIRKSINVIQHVNRGKDKNHM IISIDAEKAFDNIQQRFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKT GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMTVSLENPIVSA QNLLKLISNFSKVSAYKINVQKSQTFLYTNNRQTESQIMSELPFTTASKRIKYLGIQLTR DVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMP FFTELEKTTLKFIWNQKRAHIAKSVLSQKNKAGGITLPDFKLYYKATVAKTAWYWYQNRD IDQWNRTEPSEITLHIYSYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTP YTKINSRWIKDLNVRPKTIRTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIK LKSFCTAKETTIRVNRQPTKWEKIFTTCSSDKGLISRIDNELKQIYKKKTNNPIKKWAKD MNRHCSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVSMAIIKKSGNNRCWRGCG EIGTLLHCWWNCKLVQPLWKSVW >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_3|1872_bp atgaatattgatgcaaaaatcctcaataaaatactggcaaaacgaatccagcagcacatc aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctgcttcaat atacgcaaatcaataaatgtaatccagcatgtaaacagaggcaaagacaaaaaccacatg attatctcaatagatgcagaaaaagcctttgacaatattcaacaacgcttcatgctaaaa actctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgac aaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaact ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg gccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtc aaattgtccctgtttgcagacgacatgactgtatctctagaaaaccccattgtctcagcc caaaatctccttaagctgataagcaacttcagcaaagtctcagcatacaaaatcaatgta caaaaatcacaaacattcttatacaccaacaacagacaaacagagagccaaatcatgagt gaactcccattcacaactgcttcaaagagaataaaatacctaggaatccaacttacaagg gatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggat acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaatg gccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcct ttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccac atcgccaagtcagtcctcagccaaaagaacaaagctggaggcatcacactacctgacttc aaactatactacaaggctacagtagccaaaacagcatggtactggtaccaaaacagagat atagatcaatggaacagaacagaaccctcagaaataacgctgcatatctacagctatctg atctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatgg tgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacacct tatacaaaaatcaattcaagatggattaaagacttaaacgttagacctaaaaccataaga accctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatg tctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaa ctaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaa tgggagaaaattttcacaacctgctcatctgacaaagggctaatatccagaatcgacaat gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggac atgaacagacactgctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgc tcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcaca ccagttagcatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtgga gaaataggaacacttttacactgttggtggaactgtaaactagttcaaccattgtggaag tcagtgtggtga >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_4|186_aa MGCALDERSKEPNRGCLGKPEISISRKCCHSVVWRTSWYGGDVESRNLPGGLACARVNET YPLLKMLSKEMREGQRYLGFYLPLPSNFPLVPNLTHAQTEAPLISSARFLSSALESILVI QCRHAEGHTDARLLSGEGEKRAVVEKLTLGFYAQNLGDRILHTNLSNKQYTQVSDPQFQQ SCEPVP >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_4|561_bp atgggttgtgcacttgatgaaagatcaaaggaaccaaacagaggttgtttaggtaagcca gagattagtatcagcaggaagtgctgccattctgtagtatggaggacctcctggtatgga ggtgatgtggaatctagaaacctgccaggaggcttggcctgtgccagagttaatgagact tacccactactgaagatgctatccaaggaaatgagagaaggacagagataccttggcttc tatcttcctctgccctccaatttcccactagtgcccaacttgacccatgctcaaacagaa gcaccattgatttcctctgcccgtttcttgtcttctgcattggaaagtattcttgtgata caatgcagacatgcggaaggtcacactgatgcaagactactatcaggggaaggagagaag agggcagtggttgaaaaactaacacttgggttctatgctcagaacttgggtgaccggatc cttcatacaaacctcagcaacaaacaatacacccaggtttcagacccgcagttccaacaa tcatgtgaaccagttccttaa >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_5|159_aa MKVSVSKRHAGDEQGLLQFPSTKLTLQGYFCDHQALQGSSKFPRKAAGIMKEIYSNEVGE EIRCHLAQKGIGLQFHCGMNAMWHQHAVWHPNVGFRFKTALCVPVNREFQREKTELRIWA TEGLKPLERKSSSNAQLIFGQEEFIRGRFTREQNFEKLN >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_5|480_bp atgaaggtcagtgtaagcaagcggcatgcaggtgatgaacagggactactgcagtttccg tcaaccaagttgacacttcagggatacttttgtgaccaccaggcattacaaggatcctca aagttccccagaaaagcagctggcatcatgaaggaaatctattctaatgaagtaggagag gagatacggtgccatttagcacagaaaggtattggtttgcagtttcactgtggaatgaat gctatgtggcaccagcatgctgtctggcacccaaacgttggcttccgatttaaaacagct ctttgtgtccctgtaaacagggaatttcagcgagaaaagacagaactaagaatctgggct actgaaggactcaaaccgttagaaagaaaatcttcctccaatgcacaactcatatttggt caagaggaatttattcgaggaagatttactagagaacagaattttgagaaactcaattaa >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_6|124_aa MNRCAFAAIIEAGAAKMKFNPFVTSDRSKNRKRHFKAPSHIRRKIMSSPLSEELRQKYNV RSMASERMMKLGLYQDTTKVSKLAKQSWFTGKNMSPTLNGYSGKKLMAQLSMEAFTPARW LSLG >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_6|375_bp atgaatagatgtgcctttgcagccatcattgaagcgggagcagccaaaatgaagttcaat ccctttgtgacttccgaccgaagcaagaaccgcaaaaggcatttcaaagcaccttcccac attcgcaggaagattatgtcttccccactttctgaagagctgagacagaagtacaacgtg cgatccatggcatccgaaagaatgatgaagttaggcttgtaccaggacactacaaaggtc agcaaattggcaaagcagtcctggtttacaggaaaaaatatgtcacctacattgaatggg tacagcgggaaaaagctaatggctcagctgtccatggaggcattcaccccagcaaggtgg ttatcactaggctaa >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_7|110_aa MFDLLEEDEQDSSVSEYNIKFSSGRQNLFSLESFLSRITKRYRGKSEHSNRNDDEAAGSA YDEKSKYENKIGIHHKVSHSGDDTFKGDDDDYTDIHSEKFKNTWIELLCV >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_7|333_bp atgtttgatctattagaagaggacgaacaagattcatcagtttctgaatataatattaaa ttttcttctggcaggcagaatttattctctttagaatcatttctttctagaataacaaaa aggtacagaggaaaatcagagcatagcaaccggaatgatgatgaagcggcaggatcagcc tatgatgaaaaatcaaaatatgaaaataaaattggaatccatcataaagtttcccatagt ggagatgacacctttaaaggagatgatgatgactacaccgatattcatagtgagaaattt aagaacacatggatagaactgctttgcgtctag >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_8|454_aa MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEISSACSQEQPFKFSYGEKCLYN VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT MVGSAASQSFPPPLMIKQEPRDFAYDSGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMY REGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPA MNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHIN EEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_8|1365_bp atggatggattttatgaccagcaagtgccttacatggtcaccaatagtcagcgtgggaga aattgtaacgagaaaccaacaaatgtcaggaaaagaaaattcattaacagagatctggct catgattcagaagaactctttcaagatctaagtcaattacaggaaacatggcttgcagaa gctcaggtacctgacaatgatgagcagtttgtaccagactatcaggctgaaagtttggct tttcatggcctgccactgaaaatcaagaaagaaccccacagtccatgttcagaaatcagc tctgcctgcagtcaagaacagccctttaaattcagctatggagaaaagtgcctgtacaat gtcagtgcctatgatcagaagccacaagtgggaatgaggccctccaacccccccacacca tccagcacgccagtgtccccactgcatcatgcatctccaaactcaactcatacaccgaaa cctgaccgggccttcccagctcacctccctccatcgcagtccataccagatagcagctac cccatggaccacagatttcgccgccagctttctgaaccctgtaactcctttcctcctttg ccgacgatgccaagggaaggacgtcctatgtaccaacgccagatgtctgagccaaacatc cccttcccaccacaaggctttaagcaggagtaccacgacccagtgtatgaacacaacacc atggttggcagtgcggccagccaaagctttccccctcctctgatgattaaacaggaaccc agagattttgcatatgactcaggctgtatgtttgaaaagggccccaggcagttttatgat gacacctgtgttgtcccagaaaaattcgatggagacatcaaacaagagccaggaatgtat cgggaaggacccacataccaacggcgaggatcacttcagctctggcagtttttggtagct cttctggatgacccttcaaattctcattttattgcctggactggtcgaggcatggaattt aaactgattgagcctgaagaggtggcccgacgttggggcattcagaaaaacaggccagct atgaactatgataaacttagccgttcactccgctattactatgagaaaggaattatgcaa aaggtggctggagagagatatgtctacaagtttgtgtgtgatccagaagcccttttctcc atggcctttccagataatcagcgtccactgctgaagacagacatggaacgtcacatcaac gaggaggacacagtgcctctttctcactttgatgagagcatggcctacatgccggaaggg ggctgctgcaacccccacccctacaacgaaggctacgtgtattaa >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_9|79_aa MVMVGFEKRENKLGQKLSGNEDRERGQRGEGDPREGAASRLIDSPKSDLVKETRSQWEAA IHQFGLEAPGGEVEEKPPN >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_9|240_bp atggtgatggtgggttttgaaaaacgggaaaataaattgggccaaaagctgagtgggaat gaggatagagagcgagggcagaggggcgagggagacccgcgggaaggggcagcaagccgc ctgattgacagcccgaaatctgatcttgtgaaagagacgcggagccaatgggaggcagcg atccatcagtttggattggaggcccctggaggagaagtagaggaaaaaccaccgaattga >gi568815591r:13795869_14089052|GENSCAN_predicted_peptide_10|461_aa MADEKADKLDTKEKKLKAKRADGDRVKKGDMTSKLKSPRKGSFIAAEILSLSEELADVPN LLHIAEGPCTRGIPLQRTHQKFVIAISTKINISNVKIPKHLTDISRRSGYGSPHTRKSSQ DGGRPLPKWQRAASNTVASLVFSDLGFLASRIPRNGILGHVVSVIALLEAVGHGREPWNP VTRIQLDEDEPEHLAVQEQWQAFSPIGRGNGPLAGIGAQQTPCQIWRDGSQRRVYDGGKQ QCCLQLPLKINGFFFLFTFQVSHTSFSLAKPKPVTANSYLLAVFSHGLPSLHAHVCVFIV SSYTDTHCIELGPTHTTSFYLNRFFKGFISKYSYNLRNSWFWITIVFNFLKTNSPVVLDI LNSVRSQLQYNWYAVSDIRSADHQRPGRGLSCGNPLSGQSEYCISGICSYTDGKLENFSK RRRDVRLLPDVKDSPKSHPEGLMDRSQWEQAMEAELERRGL >gi568815591r:13795869_14089052|GENSCAN_predicted_CDS_10|1386_bp atggcagatgaaaaagctgataaactggatactaaagagaagaaactcaaagccaagagg gctgatggtgacagggtgaaaaagggtgacatgacctcaaagctaaaaagcccacgaaag ggaagcttcattgcagctgaaatcctgtccttgtctgaggaactggcagatgttcccaat ctgctacatattgcagaagggccatgcacaagaggaattcctctacaaagaacacaccag aaatttgtcattgccatctcaaccaaaattaatatcagtaatgtaaaaatcccaaaacat cttactgacatttcaagaagaagcggctatggaagcccacacaccaggaagagctcccaa gatggtggcaggccacttccaaaatggcagcgggctgcttccaatacggtggcaagcctt gtgttctctgacctggggttcttggcctcacggattccaaggaatggaatcttgggccat gtggtgagtgttatagccctgttagaagccgtgggtcacggaagagaaccgtggaaccca gtgactaggattcagcttgatgaggacgaacctgagcacttagccgtgcaggaacaatgg caagcctttagccccatcgggaggggcaatgggcccctggctggaataggagcgcagcag acaccctgccagatctggagggatggaagtcagaggcgggtctacgatggcggcaaacag cagtgctgcctgcagctcccactgaagatcaatggcttcttcttcttgttcaccttccaa gtctcacacacgagtttctcactggcaaaacctaaaccagtaactgctaatagctatctt cttgctgtgttctcacatggacttccctctctgcatgctcacgtctgtgtctttattgtt tcttcttatacagacacccattgtattgaattagggcccacccatacgacttcattttac cttaatcgcttctttaaaggctttatctccaaatacagctacaatctgagaaactcttgg ttttggatcactattgtgtttaacttccttaagactaattctcctgttgtgctagacatt ttgaactcagtgagatctcaactgcaatataattggtatgctgtgtcagacatcaggtcg gctgaccaccagagaccaggaagaggactctcatgtggcaatcccctgtctgggcaaagt gagtattgcatatcaggaatttgctcctacacggatgggaagctagaaaatttttctaaa cgtaggcgggatgtcaggctattgccagatgtaaaggacagtcctaaaagccatccggaa ggtcttatggatagatctcagtgggaacaggccatggaggctgaactagagaggagaggt ctatag