GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:36:42

Sequence gi568815578r:1210444_1413468 : 203025 bp : 44.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7665   8037  373  2  1   24   58   220 0.248   9.73
 1.02 Intr +  10412  10663  252  0  0   67   35   132 0.300   3.21
 1.03 Term +  11348  11610  263  0  2   70   55   152 0.539   5.79
 1.04 PlyA +  11629  11634    6                               1.05

 2.00 Prom +  12391  12430   40                              -2.46
 2.01 Init +  14973  15063   91  2  1   69   78    32 0.063  -0.99
 2.02 Intr +  21083  21176   94  0  1   96   22    65 0.054  -0.28
 2.03 Intr +  23642  23748  107  2  2  111   77    27 0.306   3.76
 2.04 Intr +  35248  35316   69  2  0   85   62    54 0.254   1.65
 2.05 Intr +  55853  56039  187  0  1  107   23    83 0.409   2.45
 2.06 Intr +  56211  56369  159  0  0   98   75   104 0.541   9.20
 2.07 Intr +  59121  59165   45  0  0  103   93    40 0.679   3.52
 2.08 Term +  71161  71374  214  1  1   90   47   106 0.465   3.40
 2.09 PlyA +  73713  73718    6                               1.05

 3.04 PlyA -  73923  73918    6                               1.05
 3.03 Term -  74181  74141   41  1  2  114   47    27 0.453  -1.45
 3.02 Intr -  75964  75820  145  1  1  111   59   140 0.835  13.26
 3.01 Init -  77322  77311   12  0  0   64   81     8 0.141  -2.05
 3.00 Prom -  78550  78511   40                              -2.96

 4.00 Prom +  79057  79096   40                              -7.46
 4.01 Init +  85136  85268  133  1  1   94   62   110 0.485   8.89
 4.02 Intr +  85882  85978   97  2  1  110  109    23 0.897   5.67
 4.03 Intr +  86603  86809  207  2  0   39   86   260 0.667  19.09
 4.04 Intr +  90119  90268  150  2  0  103  105   278 0.998  30.28
 4.05 Term +  94435  95611 1177  1  1   79   55  1955 0.993 182.57
 4.06 PlyA +  97603  97608    6                              -3.44

 5.12 PlyA -  97638  97633    6                              -3.84
 5.11 Term -  98136  97836  301  2  1  114   42   122 0.904   4.89
 5.10 Intr - 100448 100357   92  2  2  102   78   176 0.966  16.79
 5.09 Intr - 102065 101894  172  1  1   75  102   322 0.999  32.25
 5.08 Intr - 102319 102144  176  1  2  114  109   224 0.998  25.84
 5.07 Intr - 103055 102897  159  2  0  110   91   167 0.951  19.38
 5.06 Intr - 107975 107875  101  0  2   96   31    48 0.778  -0.27
 5.05 Intr - 108518 108469   50  1  2   60   81    29 0.103  -2.28
 5.04 Intr - 109216 109147   70  2  1  121  109    26 0.130   6.24
 5.03 Intr - 109948 109920   29  0  2   72  111     4 0.020  -1.14
 5.02 Intr - 118743 118642  102  2  0   35  115    86 0.205   5.29
 5.01 Init - 153279 153197   83  0  2   65   70    83 0.300   4.64
 5.00 Prom - 157144 157105   40                              -4.86

 6.07 PlyA - 158564 158559    6                               1.05
 6.06 Term - 161797 161669  129  1  0  114   48   134 0.959  10.18
 6.05 Intr - 165160 165048  113  2  2   97   85    32 0.133   3.90
 6.04 Intr - 182438 182391   48  0  0  102  117    60 0.002   8.95
 6.03 Intr - 182658 182519  140  2  2   30  113    66 0.002   3.41
 6.02 Intr - 182874 182683  192  2  0   89   41    75 0.001   1.51
 6.01 Intr - 183283 183112  172  2  1   53   77    84 0.002   2.80

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 171147 171247  101  2  2   58  114    35 0.864   2.83
S.002 Term + 175115 175223  109  2  1  107   48    74 0.899   3.28
S.003 Sngl + 182533 182895  363  0  0   78   38   266 0.969  14.69


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_1|295_aa
MEERVSVIEDQMNEMKREEKFREKRVKRNEQSLQEMWDYVKRPNLHLIGVPESDGENGTK
LENTLQDIIQENFPNLARQANIQIQEIQRTPQRDSSRRATPRHIIVRFTKVEMKEKMLRA
AREKVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIISAQNLLKLISNFS
KVSEYKINVRKSQTFLYTNNRQTESQIMKLEKTTLKFTWNQKRAHIAKTILSQKNKAGGV
TLPNFKLYYKATVTKTAWYWYRNRDIDQWNRTEPSEIIPHIYNHLIFDKPDKNKK

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_1|888_bp
atggaagaaagggtatcagtgattgaagatcaaatgaatgaaatgaagcgagaagagaag
tttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatgtgggactacgtg
aaaagaccaaatctacatctgattggtgtacctgaaagtgacggagagaatggaaccaag
ttggaaaacactcttcaggatatcatccaggagaacttccccaacctagcaaggcaggcc
aacattcaaattcaggaaatacagagaacgccacaaagagactcctcgagaagagcaact
ccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggca
gccagagagaaagtgttggaagttctcgccagggcaatcaggcaagagaaagaaataaag
ggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgta
tatttagaaaaccccatcatctcagcccaaaacctccttaagctgataagcaacttcagc
aaagtctcagaatacaaaatcaacgtgcgaaaatcacaaacattcctatacaccaataac
agacaaacagagagccaaatcatgaaattggaaaaaactactttaaagttcacatggaac
caaaaaagagcccacattgccaagacaatcctaagccaaaagaacaaagctggaggcgtc
acgctacctaacttcaaactatactacaaggctacagtaaccaaaacagcatggtactgg
taccgaaacagagatatagaccaatggaacagaacagagccctcagaaataataccacac
atctacaaccatctcatctttgacaaacctgacaaaaacaagaaatga

>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_2|321_aa
MGPRPHPCHAPAQVSQVRAPGQSRRLRTRTGLVDLPKENFEASYNAITLPEEFHDFDTQN
MNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFDRFFFPFARDSSSSGGRNPVMVL
APAPASTQLAASCRGSGEQFGGPCRAAEAMEASAGDDKDPGDLRAHRPAAPAAVQSAECQ
GVGSLIRARRLQQRLQRRCAKPGRSGASRRGCGGPVDSGEEAAAERGAGPALHRGRWEQG
FGEEEAVNNLRMWNAPPQAAPGYLENNYAPVLQSSAQGHQLLSSAEKPLSLLPNPSVTRA
SIMGLLAEEEVAHNRHLVNID

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_2|966_bp
atggggcccaggccccatccctgtcatgcccctgctcaggtgtctcaggtccgagcgcca
ggacaaagccggagactgcgcactaggaccggactggttgaccttccaaaagagaatttt
gaagcatcttacaatgctatcacattgccagaagaatttcatgattttgacacccaaaat
atgaatgctattgatgtttcagaacactttactcagaaccaaagcagaccagaagaaatc
actcttagagaaaattttgacaatgatctaattttccaagctgagagctttgacaggttc
ttcttcccttttgcccgtgacagctccagcagtggtggcaggaatcctgtcatggtcctc
gccccagccccggcgagcacccagctagccgcctcctgcaggggctcgggagagcaattc
ggcggcccctgcagggcagctgaagccatggaagcctccgcaggtgatgacaaggacccc
ggggatctccgggcccaccgcccagctgcacccgccgcagtccagagtgccgagtgccag
ggggtggggtcgctgatcagggccaggcggctgcagcagcgactgcagaggcgctgcgcc
aagccgggccggagtggtgcgagccggcggggctgcggagggccagtggactcaggtgag
gaggccgcggcggagcggggagctggccctgcgctgcaccgcggcaggtgggaacagggg
tttggagaagaagaagctgtgaacaatttacgaatgtggaatgctcctccacaggcagct
cctgggtacctggagaacaactatgcacctgtcctccagagctctgctcaagggcaccag
cttctgagttctgcagagaagcccctctctcttctgcccaacccctcagtgacacgtgct
tcgattatgggactattggcagaggaggaagtggcacacaatagacacttggtaaatatt
gactga

>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_3|65_aa
MRKMLQLPCCPQQLIPVHLIPRGTSHAMLNSFTFNKIQGLNNAQCGSHLLEEGLCSKVTL
SVNLL

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_3|198_bp
atgaggaaaatgctgcagctgccctgctgtcctcagcagctgatccctgtccacctgatt
ccccgtggtacttcccatgccatgctgaattctttcaccttcaataagatccagggcctc
aacaatgcccagtgtggctcacacttgctggaagagggtctttgctccaaggtcaccctc
tcagtgaatcttctctga

>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_4|587_aa
MPVCRMGAGGPGCMSCVMGWLPEHVHGDACGMSWNGRDMVPSRVAPGIPPIPPLTRTHSL
MAMSLPGSRRTSAGSRSGGTLGRSGLAVFAQCPQLPASQNEHLPLLPASRRTSPPVSVRD
AYGTSSLSSSSNSGSYKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIR
HLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQ
VIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGMAKEDGTGESAGGSPAR
SLTRSSTYTKLSDPAVCGDRQPGDPSSGSAEDGADSGFAAADDTLSRTDALEASSLLSSG
VDCGTEETSLHSSFGLGPRFPASNTYEKLLCGMEAGVQASCMQERAIQTDFVQYQPDLDT
ILEKVTQAQVCGTDPESGDRCPELDAHPSGPRDPNSAVVVTVGDELEAPEPITRGPTPQR
PGANPNPGQSVSVVCPMEEEEEAAVAEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQ
RRQGQPIYNISSLLRGCCTVALHSIRRISCRSLSQPSPSPAGGGSQL

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_4|1764_bp
atgcctgtgtgccgcatgggtgcgggaggacctggctgcatgtcctgcgtcatgggctgg
ctgcctgagcacgttcatggagacgcgtgtggcatgtcttggaatggcagggacatggta
ccttctcgtgttgcccccgggataccgcccatcccaccccttactcggacccacagcctc
atggccatgtccctgccaggaagtagacggacctctgctggatcacgcagcgggggcact
ttgggccgcagcggcctggcagtgttcgcccagtgtccgcagctgcccgccagccagaac
gagcacctgcctcttcttcctgcctccaggcgcacctctccacctgtgagcgtgcgggat
gcctacggcacctcttcgctcagcagcagcagcaattctggctcctacaagggcagtgac
agcagtcccacgccaaggcgctccatgaaatacacgctgtgcagtgacaaccatggcatc
aagcccccgaccccggagcagtacctgacccccctgcagcagaaggaggtgtgcatccgg
cacctgaaagcccggctgaaggacacacaggaccggctccaggaccgggacacagagatt
gatgacctgaagacgcagctgtcacgcatgcaggaggactggattgaggaggagtgccac
cgcgtggaggcccagctggccctgaaggaggcccgaaaggagatcaagcagctcaagcag
gtcatcgacactgtcaagaacaacctgattgacaaggacaaggggctgcagaagtacttc
gtggacatcaacatccagaacaagaagctggagacgctgctgcacagcatggaggtggcc
cagaatggcatggccaaggaggatggcactggggagtcagccggtgggtcccctgcccgc
tccctcacccgcagctccacctacaccaagctgagtgacccggctgtctgtggtgaccgc
cagccgggtgatccctccagcggctctgctgaggatggggcagacagtggctttgcagca
gccgatgacacactgagccggacggacgcgctggaagccagcagcctgctgtcgtcgggg
gtggactgtggcaccgaggagacctcgctgcacagctccttcggcctgggcccccgcttc
cctgccagcaacacctatgagaagctgctgtgtggcatggaggctggtgtgcaggccagc
tgcatgcaggagcgtgccatccagacagacttcgtgcagtaccagcctgaccttgacacc
atcctggagaaagtgacccaggcccaggtctgtgggacagaccctgagtcaggggacagg
tgcccagagctggatgcccacccttcagggcccagagaccccaactcagcagtggtggtg
acagtgggtgatgagctagaggccccagagcccatcacccgtggacccaccccacagcgg
cctggtgccaaccccaaccctggccagtcggtgagcgtggtgtgccccatggaagaggag
gaggaggctgccgtggctgagaaggagcccaagagctactggagccgccactacatcgtg
gatctgctggctgtggtggtgccggccgtgcccacggtggcctggctttgccgctcccag
cggcgccagggccagcccatctacaacatcagctccctgctgcggggctgctgcactgtg
gccttgcactccatccgcaggatcagctgccgctcgctgagccagccgagtcccagccca
gcgggcggcggctcccagctctga

>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_5|444_aa
MGPSEAEFAAAAVLYSMQQNGCQLLLGRSGSQLRDRATFQGGKQIQQRQQLEKVVEQHLA
CRGPKSGPSHSGPGQSLTQDASPASPGNSHFPTTSSGGWKPKIKVLANSVSVLYPNLAEL
ENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIH
LCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQ
VVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH
YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKAWHLSSSCRTSTAWS
LTGSLHLCIDAGSEHTHMHSRAGPGPPATTVPGPVPGLSGELLPPLTRRKAHRRPQESPR
KRGPSTLWARALVTHTGGLRPEQE

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_5|1335_bp
atgggcccatcagaggctgagtttgcagcagcagctgtcctgtacagcatgcagcaaaac
ggctgtcagctcttattaggaagatcaggaagccagctgagagacagggctacgtttcag
ggagggaaacagattcagcagcggcagcagctggagaaggtcgtggagcagcaccttgcc
tgcagaggacctaaaagtggaccaagccattcaggcccaggtcagagcctcacccaagat
gccagccctgccagtccaggcaacagccatttccccaccaccagctctggaggctggaag
cccaagatcaaggttctggccaattcagtttctgttttgtacccaaacttggcagaactg
gaaaattatatgggtctttccctctccagccaagaagtccaggagagcctgcttcagatt
ccagagggtgacagtacagcggtctcgggccccgggcccggccagatggtggcaccggta
accgggtacagcctgggcgtgcggcgagctgagatcaagcccggggtgcgcgagatccac
ctgtgcaaggacgagcgcggcaagaccgggctgaggctgcggaaggtcgaccaggggctc
tttgtgcagttggtccaggccaacacccctgcatcccttgtggggctgcgctttggggac
cagctcctgcagattgacgggcgtgactgtgctgggtggagctcgcacaaagcccatcag
gtggtgaagaaggcatcaggcgataagattgtcgtggtggttcgggacaggccgttccag
cggactgtcaccatgcacaaggacagcatgggccacgtcggcttcgtgatcaagaagggg
aagattgtctctctggtcaaagggagttctgcggcccgcaacgggctcctcaccaaccac
tacgtgtgtgaggtggacgggcagaatgttatcgggctgaaggacaaaaagatcatggag
attctggccacggctgggaacgttgtcaccctgaccatcatccccagtgtgatctacgag
cacatggtcaaaaaggcatggcacctgagcagcagctgccgcacctccaccgcctggagc
ctcacaggcagcctgcacctttgcatagatgcgggatctgagcacacacacatgcactcc
agagctgggccagggccaccggccaccacagtcccagggcctgtcccagggctgagtggg
gagctgctccctccactgacaagaagaaaagcccatcgaaggccccaggagagcccccga
aagagaggaccctcaacactgtgggccagggccctcgtgacccacaccggtggtctcagg
ccagaacaggagtag

>gi568815578r:1210444_1413468|GENSCAN_predicted_peptide_6|264_aa
XGQQAISAAVSGNIGSWSRRCVPPVLFPWPLDSDSVGHKKSDPIRIINFHMLNKNVCMEM
LNRLEAQRKGRRTKQVTRQTQLYPEASGLPEVSGLLGFRSLFRRPGFPGRRAPCGARTQG
WARRAEVLGRAVEPPPGRCWSTPPVAPPARSASAAAMGVQVETISPGDGRTFPKRGQTCV
VHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYG
ATGHPGIIPPHATLVFDVELLKLE

>gi568815578r:1210444_1413468|GENSCAN_predicted_CDS_6|795_bp
nggggacagcaggccatttccgcagcagttagtggaaatattggttcttggagcaggcgc
tgcgtgcctccagtgcttttcccctggcccctggattctgattccgttgggcataagaag
agtgacccaattcgtattatcaactttcacatgctcaataagaatgtatgcatggagatg
cttaaccggctggaagcacagaggaagggcaggagaacgaagcaagtcacccggcaaaca
cagctgtatccggaggcctccgggcttccggaggtctcggggcttctgggcttccggtcc
ctcttccggaggcctgggtttccgggacgtcgcgcgccgtgtggggcgcgcacgcagggc
tgggcgcgacgcgccgaggtactaggcagagccgtggaaccgccgccaggtcgctgttgg
tccacgccgcccgtcgcgccgcccgcccgctcagcgtccgccgccgccatgggagtgcag
gtggaaaccatctccccaggagacgggcgcaccttccccaagcgcggccagacctgcgtg
gtgcactacaccgggatgcttgaagatggaaagaaatttgattcctcccgggacagaaac
aagccctttaagtttatgctaggcaagcaggaggtgatccgaggctgggaagaaggggtt
gcccagatgagtgtgggtcagagagccaaactgactatatctccagattatgcctatggt
gccactgggcacccaggcatcatcccaccacatgccactctcgtcttcgatgtggagctt
ctaaaactggaatga