GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:34:26

Sequence gi568815591f:30811910_31023626 : 211717 bp : 50.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  16770  16828   59  0  2   95   86    62 0.192   5.23
 1.02 Intr +  24749  24855  107  0  2   61  115    81 0.946   8.03
 1.03 Intr +  27560  27654   95  1  2   59   68    86 0.780   2.46
 1.04 Intr +  28226  28325  100  2  1   57   76    40 0.006  -0.19
 1.05 Intr +  28851  28939   89  2  2   94   89    66 0.006   6.07
 1.06 Intr +  38545  38646  102  1  0  124   93    49 0.015   8.29
 1.07 Intr +  39774  40006  233  0  2   71   72    51 0.010  -0.78
 1.08 Intr +  43406  43610  205  0  1  -11   81   200 0.005   7.66
 1.09 Intr +  45343  45427   85  1  1  110   23    16 0.005  -2.88
 1.10 Intr +  47348  47415   68  1  2   82   68    97 0.013   4.80
 1.11 Intr +  49516  49538   23  1  2   91  105    -2 0.007  -1.01
 1.12 Intr +  51716  51837  122  0  2   66   68    76 0.014   3.61
 1.13 Intr +  53300  53325   26  1  2  123  106   -43 0.121  -2.18
 1.14 Intr +  60839  60917   79  2  1   94   61    60 0.460   3.45
 1.15 Intr +  63586  63747  162  0  0  129   80   170 0.984  20.47
 1.16 Intr +  70272  70452  181  2  1   80   46   210 0.834  15.44
 1.17 Intr +  71012  71084   73  0  1  115   89    58 0.997   7.06
 1.18 Intr +  73926  74046  121  0  1  106   92    31 0.853   5.80
 1.19 Intr +  76163  76231   69  1  0   78   91    74 0.961   6.08
 1.20 Intr +  77572  77826  255  0  0   11   83   111 0.283   0.54
 1.21 Intr +  80932  80988   57  0  0   32   60   109 0.097   1.58
 1.22 Intr +  99923 100384  462  1  0   59   86   835 0.023  73.75
 1.23 Intr + 105619 105639   21  0  0  133   57    15 0.535   0.64
 1.24 Intr + 110157 110321  165  2  0  131   68   190 0.864  21.46
 1.25 Intr + 110655 110735   81  2  0  139   49    39 0.652   4.93
 1.26 Term + 111541 111720  180  0  0   87   43   371 0.877  30.11
 1.27 PlyA + 113582 113587    6                               1.05

 2.04 PlyA - 116051 116046    6                               1.05
 2.03 Term - 120930 120774  157  2  1   96   37    71 0.611   0.21
 2.02 Intr - 122468 122381   88  0  1  110   99    26 0.612   4.93
 2.01 Init - 130258 130171   88  1  1   64   41    57 0.221  -0.60
 2.00 Prom - 130421 130382   40                              -3.26

 3.00 Prom + 139703 139742   40                              -4.26
 3.01 Init + 152160 152216   57  2  0   99   84   100 0.982  10.24
 3.02 Intr + 156922 157027  106  0  1   71   47   133 0.418   7.29
 3.03 Intr + 157154 157261  108  0  0   85   94    13 0.600   1.86
 3.04 Intr + 157958 158055   98  0  2   15   94    67 0.791  -0.27
 3.05 Intr + 159210 159307   98  2  2  115   72   178 0.891  17.71
 3.06 Intr + 160054 160216  163  1  1   73   75   161 0.991  13.28
 3.07 Intr + 162076 162229  154  0  1   58   72   122 0.930   7.25
 3.08 Intr + 162520 162580   61  2  1  101   77    93 0.997   7.29
 3.09 Intr + 163062 163131   70  0  1  129   44   118 0.974  10.68
 3.10 Intr + 163868 163995  128  1  2  115   55    64 0.992   5.28
 3.11 Intr + 164520 164649  130  0  1   77   94   128 0.999  13.00
 3.12 Intr + 165372 165413   42  2  0   72   85    66 0.860   3.14
 3.13 Term + 171660 171752   93  2  0   98   53   110 0.433   6.33
 3.14 PlyA + 173285 173290    6                               1.05

 4.06 PlyA - 173376 173371    6                               1.05
 4.05 Term - 175811 175650  162  2  0  119   46    50 0.100   1.84
 4.04 Intr - 184307 184093  215  0  2   28   89   119 0.134   4.43
 4.03 Intr - 185968 185889   80  0  2  108    8    17 0.032  -5.11
 4.02 Intr - 191958 191825  134  0  2   58   70    71 0.324   1.74
 4.01 Init - 192136 191987  150  1  0   38  101   120 0.744   8.34
 4.00 Prom - 197888 197849   40                              -7.06

 5.03 PlyA - 198348 198343    6                               1.05
 5.02 Term - 204695 204564  132  2  0   65   49   107 0.836   2.59
 5.01 Init - 207980 207822  159  2  0   71   68   110 0.827   7.13

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  29661  29728   68  1  2  131   42    53 0.961   3.10
S.002 Intr -  42908  42661  248  2  2  147  100    66 0.937   9.96
S.003 Intr -  47517  47383  135  0  0   54   84    73 0.878   4.26
S.004 Init + 100001 100384  384  1  0  111   86   808 0.960  79.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:30811910_31023626|GENSCAN_predicted_peptide_1|1073_aa
XKNQLLPSDKVDGELGALRLEDVEDELIREEVILSPVPSVLKLQTASKPIDLSVAKALQM
WLVQQELGNKTLCFGDVKIEHGFKEHLLPTSLCQCVPGVRSCAKPRDAYRDELLKKPLHH
RGGPCGVLAAVQGCVLQKLLFEGDSKADCAQGLQPSDAHRTRCLVLALADIVWRAGGRER
AVVALLGNRSPEREGGWSKATQPLKEHGAPNPAPIPGRLGLHTPGDCTPRGSLGEDGGGV
PPSVKTKGKSAFRSLETHLSVVVLGSLKEQKGDLLLIRSVVRVQQSQERRAEPDGIRVWD
LARVARNGITWSHSQLKQNVEPPEPGKGSDWFLFRHRFLQKPFLDTPSPNLKSVLKALPF
EVGPYGCILLTLSAILSRSTELGGSKAEGDQSQGEDIMDRCKPSRVLPTTACLATSLSEA
PRRVEKQTFEVTCEAGWVGGALNGPHRGKEDPEHSCLSSVLSVTQELVNLLLTGKAVSNV
FNDVVELDSGDGNITLLRGIAARSDIGFLSLFEHYNMCQVGCFLKTPRFPIWVVCSESHF
SILFSLQPGLLRDWRTERLFDLYYYDGLANQQEQIRLTIDTTQTISEDTDNDLVPPLELC
IRTKSVFHVCENFADTSCLPVPLPPSIPHHGGSTLAVVPRKAEWALSGTFFPMKNTGSIN
VEKQLRQYQQWALTAEEKSDFTKPSQFVSKYGTSVSYLSSEDERSDMDKFHQSGSTPKPN
RLLWICLTHRSPVNSLKHLDSIEALNSSTSNGFQKEDENMQKCGGLLMKKGAQPRLWLSS
QRELSTRQRSQAKPPASMASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQ
TAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCV
GAIVATAILSGITSSLTGNSLGRNDLVVAAMWLADGVNSGQGLGIEIIGTLQLVLCVLAT
TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGP
FIGGALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSRVEMKPK

>gi568815591f:30811910_31023626|GENSCAN_predicted_CDS_1|3222_bp
nngaaaaatcagttgctgccgtctgacaaggtggatggtgagctgggtgccctgcggctc
gaggatgtggaggatgagttgataagggaagaggtcatcctgtcgccagtcccatcagtg
ctcaagttgcagacagcatcaaaaccaattgacctctcagtagcaaaggcacttcagatg
tggctggtgcagcaagagctggggaataagaccctctgctttggagatgttaaaattgaa
catggatttaaggagcacttgcttcccactagcctttgccaatgtgtcccaggagtcaga
tcctgtgctaagccccgtgatgcctacagagatgagctcctcaagaagcctctgcaccac
aggggtggtccttgcggagtcctggcagctgtccaaggctgtgtcctacagaaactcctg
tttgaaggagatagcaaagccgactgtgctcagggactgcagccttcagatgcccaccgg
acccgctgcctcgtcctggccctcgcagacattgtgtggcgggcagggggccgagagaga
gccgttgttgcactattaggaaacagaagcccagagagggagggtggctggtccaaggct
acacagccactaaaggagcacggggccccaaacccggctccgattcctggacgtcttggg
ctacacacccctggggactgcacacccagggggagcctcggagaggatggaggtggagtt
cctccatcagtgaaaacaaagggcaagtcagcattccgcagtctggaaacacatttgtca
gttgtggtactaggcagtctgaaggagcagaaaggagacctgctgttgatccggagtgtt
gtgagagtgcagcagtcacaggagaggcgagcagagcctgatggcatccgtgtgtgggat
ctggccagggtggccaggaatgggatcacctggtcacactcccagctgaagcagaacgtg
gagccaccagagccaggaaaaggaagtgactggtttctgttcagacatcgctttctccaa
aaacccttccttgatactccctccccgaacttgaagtctgtgttgaaggcccttcctttt
gaagtgggcccctatggctgcatcctgctcaccctttctgccatcctgtccaggtctaca
gagctaggaggaagcaaggctgagggagaccagagccagggtgaggacatcatggacaga
tgtaaacctagccgagtgctgccgaccactgcctgcctggccacttcattgtcagaggcc
ccaagaagagtcgagaaacagacctttgaggtcacatgtgaggcagggtgggttggaggg
gccctcaatggacctcacaggggcaaagaagaccctgagcacagttgcttgtcatcagtc
ctctcagtcacccaggaacttgtcaatctgctcctgactgggaaagctgtgtccaacgtt
ttcaacgatgtggttgagctggattctggggatgggaacatcacacttctcagaggcatt
gctgcacgcagtgatattggcttcttatctctctttgagcattacaacatgtgccaggtt
ggctgcttcctgaagaccccgaggttccccatctgggtggtttgcagtgagagccacttc
agcatcctctttagcctgcagccggggctcctgcgtgactggaggactgagaggctcttt
gacttgtactactacgatggcctggccaaccagcaggagcagatccggctgaccattgac
accacccaaaccatctctgaggacacagacaacgaccttgtcccacccctcgagctctgc
atcagaaccaagtctgtgttccatgtctgcgagaactttgctgacaccagctgcctgcct
gttccacttcccccatcaatcccccatcatggtgggtccaccttggcagttgttcctaga
aaagctgagtgggctctatcaggcacctttttccccatgaaaaacactgggtccatcaac
gttgaaaagcagttaaggcagtatcagcaatgggcactcactgccgaggagaagtctgac
ttcaccaagccaagccagtttgtctccaaatacggcaccagtgtctcttatttgagcagt
gaagatgaacgctctgatatggataaattccatcaaagtggctcaaccccaaaacccaat
agactcctctggatctgcttgacacacagaagcccagtaaatagtctgaagcacttggat
agcatagaagcacttaattcttccacatccaatggatttcaaaaagaagatgagaacatg
cagaagtgcggtggcctgctgatgaagaagggggcccagcccaggctgtggctcagctct
cagagggaattgagcacccggcagcggtctcaggccaagccccctgccagcatggccagc
gagttcaagaagaagctcttctggagggcagtggtggccgagttcctggccacgaccctc
tttgtcttcatcagcatcggttctgccctgggcttcaaatacccggtggggaacaaccag
acggcggtccaggacaacgtgaaggtgtcgctggccttcgggctgagcatcgccacgctg
gcgcagagtgtgggccacatcagcggcgcccacctcaacccggctgtcacactggggctg
ctgctcagctgccagatcagcatcttccgtgccctcatgtacatcatcgcccagtgcgtg
ggggccatcgtcgccaccgccatcctctcaggcatcacctcctccctgactgggaactcg
cttggccgcaatgacctggtagtggcagctatgtggctggctgatggtgtgaactcgggc
cagggcctgggcatcgagatcatcgggaccctccagctggtgctatgcgtgctggctact
accgaccggaggcgccgtgaccttggtggctcagccccccttgccatcggcctctctgta
gcccttggacacctcctggctattgactacactggctgtgggattaaccctgctcggtcc
tttggctccgcggtgatcacacacaacttcagcaaccactggattttctgggtggggcca
ttcatcgggggagccctggctgtactcatctacgacttcatcctggccccacgcagcagt
gacctcacagaccgcgtgaaggtgtggaccagcggccaggtggaggagtatgacctggat
gccgacgacatcaactccagggtggagatgaagcccaaatag

>gi568815591f:30811910_31023626|GENSCAN_predicted_peptide_2|110_aa
MKLTVLQTYDTITLEMKKKGLDLSTSPGCPNVSLPLELSPGTHSGREASRDGGAQSKDSS
RSLARTPAPAGSSTIEGQSMIHGGFVPGDLLPQEKLLAPVQATPAGQHRD

>gi568815591f:30811910_31023626|GENSCAN_predicted_CDS_2|333_bp
atgaaactgactgtattgcaaacatatgacacaatcaccctggagatgaaaaagaaagga
ttggatctaagcacttcgcctggatgcccgaatgtttctttgcccctggaactgtctcct
gggactcacagtggaagagaggccagcagggatggcggtgctcagagcaaggacagctcc
aggagcttggcacggacaccagccccagctggttccagcacaatagaaggacagtcaatg
attcatggaggcttcgttcctggggaccttctcccccaggagaagctgctggctcctgta
caagctaccccagcagggcagcacagggattaa

>gi568815591f:30811910_31023626|GENSCAN_predicted_peptide_3|435_aa
MDRRMWGAHVFCVLSPLPTQVLGHMHPECDFITQLREDESACLQAAEEMPNTTLGCPATW
DGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFPPYPVACPVPLELL
AEEESYFSTVKIIYTVGHSISIVALFVAITILVALRRLHCPRNYVHTQLFTTFILKAGAV
FLKDAALFHSDDTDHCSFSTVMAMGEGAGQVLCKVSVAASHFATMTNFSWLLAEAVYLNC
LLASTSPSSRRAFWWLVLAGWGLPVLFTGTWVSCKLAFEDIACWDLDDTSPYWWIIKGPI
VLSVGVNFGLFLNIIRILVRKLEPAQGSLHTQSQYWYCVFVSGDTGKGRLSKSTLFLIPL
FGIHYIIFNFLPDNAGLGIRLPLELGLGSFQGFIVAILYCFLNQEGFADWAYDADSWADP
LTGKLFLSQDSSFHN

>gi568815591f:30811910_31023626|GENSCAN_predicted_CDS_3|1308_bp
atggaccgccggatgtggggggcccacgtcttctgcgtgttgagcccgttaccgacccag
gtattgggccacatgcacccagaatgtgacttcatcacccagctgagagaggatgagagt
gcctgtctacaagcagcagaggagatgcccaacaccaccctgggctgccctgcgacctgg
gatgggctgctgtgctggccaacggcaggctctggcgagtgggtcaccctcccctgcccg
gatttcttctctcacttcagctcagagtcaggggctgtgaaacgggattgtactatcact
ggctggtctgagccctttccaccttaccctgtggcctgccctgtgcctctggagctgctg
gctgaggaggaatcttacttctccacagtgaagattatctacaccgtgggccatagcatc
tctattgtagccctcttcgtggccatcaccatcctggttgctctcaggaggctccactgc
ccccggaactacgtccacacccagctgttcaccacttttatcctcaaggcgggagctgtg
ttcctgaaggatgctgcccttttccacagcgacgacactgaccactgcagcttctccact
gtaatggccatgggtgaaggggctgggcaggttctatgcaaggtctctgtggccgcctcc
catttcgccaccatgaccaacttcagctggctgttggcagaagccgtctacctgaactgc
ctcctggcctccacctcccccagctcaaggagagccttctggtggctggttctcgctggc
tgggggctgcccgtgctcttcactggcacgtgggtgagctgcaaactggccttcgaggac
atcgcgtgctgggacctggacgacacctccccctactggtggatcatcaaagggcccatt
gtcctctcggtcggggtgaactttgggctttttctcaatattatccgcatcctggtgagg
aaactggagccagctcagggcagcctccatacccagtctcagtattggtactgtgtgttt
gtgtctggggatactgggaaagggcgtctctccaagtcgacacttttcctgatcccactc
tttggaattcactacatcatcttcaacttcctgccagacaatgctggcctgggcatccgc
ctccccctggagctgggactgggttccttccagggcttcattgttgccatcctctactgc
ttcctcaaccaagagggattcgcagactgggcctacgatgcagattcctgggcagatcct
ttgactggcaagctcttcctctctcaggactccagcttccacaactga

>gi568815591f:30811910_31023626|GENSCAN_predicted_peptide_4|246_aa
MDASQRYKIPGSETKDFITHSKSTSQSCIGLLRFSDITQVPQRQCKGPMMESNTELGTFA
TSLASGKKPGLFLVGGVTASLMAAHGKYSPAKQPGEEQEMKASICVSPAERPAAGPLICP
PTVLQAGVKRVTREAPRPRFKLSYDVSMSVMTEQEGEEPAPVSSSAERSEHATYFMRLNR
RWKWSIQHRAWHMNSSSAPPPSPSTEYSTPFQQTLQQGPCGIAQMLSDKHLQVPGASAFG
AKPNPE

>gi568815591f:30811910_31023626|GENSCAN_predicted_CDS_4|741_bp
atggatgccagccaaagatacaagattcctgggtcagagacaaaggacttcatcactcac
agcaaaagcactagccagagctgcataggattgcttcggttctccgacatcacccaagtc
ccacaaagacaatgcaaagggcccatgatggagagtaacactgagcttggaacatttgcc
acttctctagcgagtggaaagaaacctggtcttttcctggtgggaggtgttactgcatct
ctcatggctgctcatggcaaatacagccctgcgaaacagcccggtgaggagcaagaaatg
aaagccagcatctgcgtgtcacctgcagagcgccctgcagctggtcctctcatttgccct
ccaacagtgctgcaggctggtgtgaagagagtgacccgggaagctccaagacccagattt
aaactcagttatgacgtttccatgagtgtcatgactgagcaagaaggtgaagagcccgcg
cctgtttcctcatctgcggaacggagcgaacacgccacctacttcatgagacttaacaga
cgatggaagtggagcattcagcacagagcctggcacatgaactcttcctctgcaccccca
cccagccctagcaccgaatactccactcccttccagcagaccctccagcagggaccctgt
ggcattgcacaaatgctctctgacaaacacctacaagtccctggtgcctcagcctttggg
gcaaaacccaaccctgaataa

>gi568815591f:30811910_31023626|GENSCAN_predicted_peptide_5|96_aa
MGDKEEEKVQSITWCQVLLPHIFPGPPHSPHRPTPEWSAAPPAGIGGAMEEVWPPEQGEN
WMNSGGEHGMMMSHQTAPQWDFAFTSDPRLPIQVVE

>gi568815591f:30811910_31023626|GENSCAN_predicted_CDS_5|291_bp
atgggggacaaggaggaggagaaagtccagagcatcacctggtgtcaagtactcctgcct
cacatcttcccaggccctccccacagcccccaccgccccacccctgaatggtcagctgct
cctcctgctggcattggtggtgctatggaggaagtgtggcctcctgaacaaggagagaat
tggatgaacagtggtggagagcatggcatgatgatgtcccaccagactgcacctcagtgg
gacttcgccttcacatcggaccccaggcttccaattcaggttgtggaatga