Result of FASTA (omim) for pF1KB3474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3474, 197 aa
  1>>>pF1KB3474 197 - 197 aa - 197 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5221+/-0.000333; mu= 8.4057+/- 0.021
 mean_var=104.9992+/-20.439, 0's: 0 Z-trim(118.0): 10  B-trim: 48 in 1/52
 Lambda= 0.125165
 statistics sampled from 30530 (30540) to 30530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.358), width:  16
 Scan time:  6.360

The best scores are:                                      opt bits E(85289)
XP_016881269 (OMIM: 159430) PREDICTED: Golli-MBP i ( 197) 1303 245.1 5.4e-65
NP_001020271 (OMIM: 159430) Golli-MBP isoform 2 [H ( 197) 1303 245.1 5.4e-65
NP_001020272 (OMIM: 159430) Golli-MBP isoform 1 [H ( 304) 1277 240.5   2e-63
XP_011524311 (OMIM: 159430) PREDICTED: Golli-MBP i ( 384) 1277 240.6 2.4e-63
XP_016881267 (OMIM: 159430) PREDICTED: Golli-MBP i ( 225) 1020 194.0 1.5e-49
NP_002376 (OMIM: 159430) myelin basic protein isof ( 186)  414 84.6 1.1e-16
NP_001020252 (OMIM: 159430) myelin basic protein i ( 197)  414 84.6 1.1e-16
NP_001020263 (OMIM: 159430) myelin basic protein i ( 160)  410 83.8 1.6e-16
NP_001020261 (OMIM: 159430) myelin basic protein i ( 171)  410 83.8 1.7e-16


>>XP_016881269 (OMIM: 159430) PREDICTED: Golli-MBP isofo  (197 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1287.8  bits: 245.1 E(85289): 5.4e-65
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
              130       140       150       160       170       180

              190       
pF1KB3 GDRGAPKRGSGKVSSEE
       :::::::::::::::::
XP_016 GDRGAPKRGSGKVSSEE
              190       

>>NP_001020271 (OMIM: 159430) Golli-MBP isoform 2 [Homo   (197 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1287.8  bits: 245.1 E(85289): 5.4e-65
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
              130       140       150       160       170       180

              190       
pF1KB3 GDRGAPKRGSGKVSSEE
       :::::::::::::::::
NP_001 GDRGAPKRGSGKVSSEE
              190       

>>NP_001020272 (OMIM: 159430) Golli-MBP isoform 1 [Homo   (304 aa)
 initn: 1319 init1: 1277 opt: 1277  Z-score: 1259.6  bits: 240.5 E(85289): 2e-63
Smith-Waterman score: 1277; 99.5% identity (99.5% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
              130       140       150       160       170       180

              190                                                  
pF1KB3 GDRGAPKRGSGKVSSEE                                           
       :::::::::::: :                                              
NP_001 GDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG
              190       200       210       220       230       240

>>XP_011524311 (OMIM: 159430) PREDICTED: Golli-MBP isofo  (384 aa)
 initn: 1302 init1: 1277 opt: 1277  Z-score: 1258.2  bits: 240.6 E(85289): 2.4e-63
Smith-Waterman score: 1277; 99.5% identity (99.5% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
              130       140       150       160       170       180

              190                                                  
pF1KB3 GDRGAPKRGSGKVSSEE                                           
       :::::::::::: :                                              
XP_011 GDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG
              190       200       210       220       230       240

>>XP_016881267 (OMIM: 159430) PREDICTED: Golli-MBP isofo  (225 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1010.8  bits: 194.0 E(85289): 1.5e-49
Smith-Waterman score: 1020; 99.3% identity (100.0% similar) in 152 aa overlap (46-197:74-225)

          20        30        40        50        60        70     
pF1KB3 STNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRTADPKN
                                     .:::::::::::::::::::::::::::::
XP_016 AICLEWPLKSQSIQDGKPRRQTRIKCREGQYGEADANQNNGTSSQDTAVTDSKRTADPKN
            50        60        70        80        90       100   

          80        90       100       110       120       130     
pF1KB3 AWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMA
           110       120       130       140       150       160   

         140       150       160       170       180       190     
pF1KB3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVSS
           170       180       190       200       210       220   

         
pF1KB3 EE
       ::
XP_016 EE
         

>>NP_002376 (OMIM: 159430) myelin basic protein isoform   (186 aa)
 initn: 414 init1: 414 opt: 414  Z-score: 420.6  bits: 84.6 E(85289): 1.1e-16
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
NP_002                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::::                              
NP_002 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
               40        50        60        70        80        90

>>NP_001020252 (OMIM: 159430) myelin basic protein isofo  (197 aa)
 initn: 414 init1: 414 opt: 414  Z-score: 420.2  bits: 84.6 E(85289): 1.1e-16
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
NP_001                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::::                              
NP_001 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
               40        50        60        70        80        90

>>NP_001020263 (OMIM: 159430) myelin basic protein isofo  (160 aa)
 initn: 426 init1: 410 opt: 410  Z-score: 417.6  bits: 83.8 E(85289): 1.6e-16
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
NP_001                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::: :                             
NP_001 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
               40        50        60        70        80        90

NP_001 FKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRD
              100       110       120       130       140       150

>>NP_001020261 (OMIM: 159430) myelin basic protein isofo  (171 aa)
 initn: 426 init1: 410 opt: 410  Z-score: 417.2  bits: 83.8 E(85289): 1.7e-16
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
NP_001                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::: :                             
NP_001 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
               40        50        60        70        80        90

NP_001 FKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGT
              100       110       120       130       140       150




197 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:30:24 2016 done: Fri Nov  4 02:30:25 2016
 Total Scan time:  6.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com