Result of FASTA (ccds) for pF1KB3474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3474, 197 aa
  1>>>pF1KB3474 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4092+/-0.00075; mu= 8.8312+/- 0.045
 mean_var=95.6674+/-18.480, 0's: 0 Z-trim(110.8): 10  B-trim: 4 in 1/49
 Lambda= 0.131127
 statistics sampled from 11873 (11880) to 11873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS42450.1 MBP gene_id:4155|Hs108|chr18           ( 197) 1303 256.0 1.1e-68
CCDS12011.1 MBP gene_id:4155|Hs108|chr18           ( 186)  414 87.8 4.6e-18
CCDS32847.1 MBP gene_id:4155|Hs108|chr18           ( 197)  414 87.8 4.8e-18
CCDS42448.1 MBP gene_id:4155|Hs108|chr18           ( 160)  410 87.0 6.8e-18
CCDS42449.1 MBP gene_id:4155|Hs108|chr18           ( 171)  410 87.0 7.2e-18


>>CCDS42450.1 MBP gene_id:4155|Hs108|chr18                (197 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1346.4  bits: 256.0 E(32554): 1.1e-68
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
              130       140       150       160       170       180

              190       
pF1KB3 GDRGAPKRGSGKVSSEE
       :::::::::::::::::
CCDS42 GDRGAPKRGSGKVSSEE
              190       

>>CCDS12011.1 MBP gene_id:4155|Hs108|chr18                (186 aa)
 initn: 414 init1: 414 opt: 414  Z-score: 437.9  bits: 87.8 E(32554): 4.6e-18
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
CCDS12                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::::                              
CCDS12 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
               40        50        60        70        80        90

>>CCDS32847.1 MBP gene_id:4155|Hs108|chr18                (197 aa)
 initn: 414 init1: 414 opt: 414  Z-score: 437.5  bits: 87.8 E(32554): 4.8e-18
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
CCDS32                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::::                              
CCDS32 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
               40        50        60        70        80        90

>>CCDS42448.1 MBP gene_id:4155|Hs108|chr18                (160 aa)
 initn: 426 init1: 410 opt: 410  Z-score: 434.8  bits: 87.0 E(32554): 6.8e-18
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
CCDS42                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::: :                             
CCDS42 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
               40        50        60        70        80        90

CCDS42 FKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRD
              100       110       120       130       140       150

>>CCDS42449.1 MBP gene_id:4155|Hs108|chr18                (171 aa)
 initn: 426 init1: 410 opt: 410  Z-score: 434.3  bits: 87.0 E(32554): 7.2e-18
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)

           110       120       130       140       150       160   
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
                                     ::::::::::::::::::::::::::::::
CCDS42                               MASQKRPSQRHGSKYLATASTMDHARHGFL
                                             10        20        30

           170       180       190                                 
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE                          
       ::::::::::::::::::::::::::::: :                             
CCDS42 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
               40        50        60        70        80        90

CCDS42 FKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGT
              100       110       120       130       140       150




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:30:23 2016 done: Fri Nov  4 02:30:23 2016
 Total Scan time:  2.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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