Result of FASTA (omim) for pF1KB3422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3422, 131 aa
  1>>>pF1KB3422 131 - 131 aa - 131 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8461+/-0.000332; mu= 8.9245+/- 0.021
 mean_var=81.0122+/-15.644, 0's: 0 Z-trim(116.9): 26  B-trim: 190 in 1/49
 Lambda= 0.142495
 statistics sampled from 28471 (28497) to 28471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.334), width:  16
 Scan time:  5.090

The best scores are:                                      opt bits E(85289)
NP_059140 (OMIM: 607268) chromatin accessibility c ( 131)  819 177.2 6.9e-45
NP_001136062 (OMIM: 605344) nuclear transcription  ( 301)  184 46.8 2.7e-05
NP_063949 (OMIM: 607269) DNA polymerase epsilon su ( 117)  178 45.4 2.9e-05
NP_001136059 (OMIM: 605344) nuclear transcription  ( 334)  184 46.8   3e-05
XP_016856857 (OMIM: 605344) PREDICTED: nuclear tra ( 335)  184 46.8   3e-05
XP_006710725 (OMIM: 605344) PREDICTED: nuclear tra ( 335)  184 46.8   3e-05
NP_055038 (OMIM: 605344) nuclear transcription fac ( 335)  184 46.8   3e-05
XP_016856858 (OMIM: 605344) PREDICTED: nuclear tra ( 335)  184 46.8   3e-05
NP_001136060 (OMIM: 605344) nuclear transcription  ( 354)  184 46.9 3.1e-05
XP_016856856 (OMIM: 605344) PREDICTED: nuclear tra ( 354)  184 46.9 3.1e-05
XP_006710723 (OMIM: 605344) PREDICTED: nuclear tra ( 354)  184 46.9 3.1e-05
XP_016856855 (OMIM: 605344) PREDICTED: nuclear tra ( 355)  184 46.9 3.1e-05
XP_011539819 (OMIM: 605344) PREDICTED: nuclear tra ( 427)  184 46.9 3.6e-05
XP_006710724 (OMIM: 605344) PREDICTED: nuclear tra ( 439)  184 46.9 3.7e-05
XP_006710721 (OMIM: 605344) PREDICTED: nuclear tra ( 439)  184 46.9 3.7e-05
NP_001295044 (OMIM: 605344) nuclear transcription  ( 439)  184 46.9 3.7e-05
XP_005270951 (OMIM: 605344) PREDICTED: nuclear tra ( 458)  184 46.9 3.9e-05
NP_001295043 (OMIM: 605344) nuclear transcription  ( 458)  184 46.9 3.9e-05
XP_016856854 (OMIM: 605344) PREDICTED: nuclear tra ( 458)  184 46.9 3.9e-05
XP_011539818 (OMIM: 605344) PREDICTED: nuclear tra ( 458)  184 46.9 3.9e-05
XP_005270952 (OMIM: 605344) PREDICTED: nuclear tra ( 458)  184 46.9 3.9e-05
XP_016856853 (OMIM: 605344) PREDICTED: nuclear tra ( 459)  184 46.9 3.9e-05


>>NP_059140 (OMIM: 607268) chromatin accessibility compl  (131 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 926.9  bits: 177.2 E(85289): 6.9e-45
Smith-Waterman score: 819; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB3 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN
               70        80        90       100       110       120

              130 
pF1KB3 DNESDHDEADS
       :::::::::::
NP_059 DNESDHDEADS
              130 

>>NP_001136062 (OMIM: 605344) nuclear transcription fact  (301 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 216.0  bits: 46.8 E(85289): 2.7e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
NP_001 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
NP_001 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
NP_001 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>NP_063949 (OMIM: 607269) DNA polymerase epsilon subuni  (117 aa)
 initn: 178 init1: 178 opt: 178  Z-score: 215.5  bits: 45.4 E(85289): 2.9e-05
Smith-Waterman score: 178; 36.2% identity (68.8% similar) in 80 aa overlap (15-94:37-116)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     ::  :::.:.....:..:.:.  .:::. .
NP_063 AGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAGQEAIFI
         10        20        30        40        50        60      

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :.:.::::. .:  .:  ..  ..:.:   :: :. .  . : ::   :          
NP_063 LARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEAVDEFAFLEGTLD         
         70        80        90       100       110                

          110       120       130 
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS

>>NP_001136059 (OMIM: 605344) nuclear transcription fact  (334 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 215.3  bits: 46.8 E(85289): 3e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
NP_001 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
NP_001 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
NP_001 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>XP_016856857 (OMIM: 605344) PREDICTED: nuclear transcr  (335 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 215.3  bits: 46.8 E(85289): 3e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
XP_016 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
XP_016 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
XP_016 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>XP_006710725 (OMIM: 605344) PREDICTED: nuclear transcr  (335 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 215.3  bits: 46.8 E(85289): 3e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
XP_006 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
XP_006 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
XP_006 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>NP_055038 (OMIM: 605344) nuclear transcription factor   (335 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 215.3  bits: 46.8 E(85289): 3e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
NP_055 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
NP_055 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
NP_055 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>XP_016856858 (OMIM: 605344) PREDICTED: nuclear transcr  (335 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 215.3  bits: 46.8 E(85289): 3e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
XP_016 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
XP_016 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
XP_016 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>NP_001136060 (OMIM: 605344) nuclear transcription fact  (354 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 214.9  bits: 46.9 E(85289): 3.1e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
NP_001 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
NP_001 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
NP_001 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180

>>XP_016856856 (OMIM: 605344) PREDICTED: nuclear transcr  (354 aa)
 initn: 195 init1: 177 opt: 184  Z-score: 214.9  bits: 46.9 E(85289): 3.1e-05
Smith-Waterman score: 184; 34.7% identity (63.4% similar) in 101 aa overlap (15-115:39-131)

                               10        20        30        40    
pF1KB3                 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVL
                                     :.  :::.::. ::: . .:. :. :: ::
XP_016 GTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVL
       10        20        30        40        50        60        

           50        60        70        80        90       100    
pF1KB3 TAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL
        :::...:.  :.  .. :   .....:  .:.: .  . . :.:: ::.:.        
XP_016 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD-------
       70        80        90       100       110       120        

          110       120       130                                  
pF1KB3 KMLKEEKREEDEENDNDNESDHDEADS                                 
         ::  ::.:.                                                 
XP_016 -ELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
              130       140       150       160       170       180




131 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:22:09 2016 done: Fri Nov  4 02:22:10 2016
 Total Scan time:  5.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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