GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:12:07

Sequence gi568815593r:138456040_138675318 : 219279 bp : 46.97% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   4496   4535   40                              -2.96
 1.01 Init +   7395   7515  121  2  1   94   38    93 0.861   5.42
 1.02 Intr +   7796   7872   77  0  2   75   72    29 0.913  -0.77
 1.03 Intr +   8281   8406  126  0  0   58   85    85 0.948   6.08
 1.04 Intr +   9663  10029  367  2  1   88  115   612 0.946  58.62
 1.05 Intr +  10368  10556  189  1  0   80   54    61 0.709   1.46
 1.06 Term +  10718  12042 1325  0  2   88   43  1483 0.811 135.53
 1.07 PlyA +  13256  13261    6                               1.05

 2.03 PlyA -  15350  15345    6                               1.05
 2.02 Term -  32666  32650   17  0  2  114   44     1 0.245  -3.30
 2.01 Init -  36042  35931  112  0  1   86   60   157 0.632  11.08
 2.00 Prom -  50190  50151   40                              -3.76

 3.28 PlyA -  51426  51421    6                               1.05
 3.27 Term -  52348  52266   83  2  2  106   43   108 0.999   5.96
 3.26 Intr -  52777  52630  148  1  1   71  105   113 0.990  11.11
 3.25 Intr -  54590  54526   65  0  2   68   87    -4 0.952  -4.06
 3.24 Intr -  55161  55006  156  1  0   44   86   145 0.989   9.88
 3.23 Intr -  55565  55436  130  2  1   51   42    88 0.934   0.77
 3.22 Intr -  56915  56725  191  0  2   88  111   103 0.960  11.90
 3.21 Intr -  57667  57529  139  1  1   86   42    65 0.917   1.74
 3.20 Intr -  61661  61522  140  0  2   38   94    76 0.925   3.38
 3.19 Intr -  62828  62653  176  1  2  114   84    41 0.517   5.88
 3.18 Intr -  86897  86794  104  2  2   25   88   207 0.657  13.37
 3.17 Intr -  87769  87509  261  1  0   71  -15   177 0.063   3.38
 3.16 Intr - 100553 100413  141  2  0   42   82    78 0.894   3.15
 3.15 Intr - 100827 100735   93  0  0   25  105   132 0.997   8.76
 3.14 Intr - 101457 101363   95  1  2   79   55   113 0.998   6.78
 3.13 Intr - 101947 101830  118  1  1   40   89   134 0.954   8.74
 3.12 Intr - 102618 102514  105  0  0   93   74    52 0.956   4.71
 3.11 Intr - 104052 103825  228  0  0   47  110   240 0.812  20.17
 3.10 Intr - 105750 105541  210  0  0   80   86   106 0.821   8.71
 3.09 Intr - 110679 110587   93  0  0   45   94    79 0.925   4.36
 3.08 Intr - 111124 110962  163  0  1   38  105   160 0.999  12.68
 3.07 Intr - 111522 111416  107  0  2   89   84   124 0.999  11.11
 3.06 Intr - 111683 111610   74  0  2   90   94    12 0.998   1.13
 3.05 Intr - 113010 112886  125  2  2   63  109    66 0.920   6.43
 3.04 Intr - 115102 114921  182  1  2   -3   84   227 0.778  11.87
 3.03 Intr - 117811 117724   88  0  1   78  105    73 0.472   7.97
 3.02 Intr - 118087 118029   59  1  2  108   85   -44 0.508  -5.02
 3.01 Init - 119279 119199   81  2  0   74   94   120 0.613  10.21
 3.00 Prom - 120504 120465   40                              -4.16

 4.00 Prom + 121245 121284   40                              -5.06
 4.01 Init + 123504 123557   54  2  0   71   26    61 0.209  -0.52
 4.02 Intr + 130964 131005   42  1  0  106   98    50 0.275   6.24
 4.03 Intr + 139393 139589  197  0  2   51   58   162 0.081   7.71
 4.04 Intr + 150287 150326   40  2  1   96   94   -26 0.146  -2.97
 4.05 Intr + 154906 155050  145  0  1   93   64   144 0.860  12.36
 4.06 Intr + 160435 160546  112  2  1   79   37    16 0.222  -4.96
 4.07 Intr + 164470 164746  277  1  1   73   72   383 0.881  32.72
 4.08 Term + 164791 164925  135  0  0   29   48   162 0.995   4.32
 4.09 PlyA + 164936 164941    6                               1.05

 5.00 Prom + 186434 186473   40                              -5.46
 5.01 Init + 191290 191371   82  0  1   87   80    79 0.753   6.14
 5.02 Intr + 196611 196675   65  1  2   91   71    42 0.262   1.24
 5.03 Term + 207185 207364  180  1  0   87   31    83 0.114   0.11
 5.04 PlyA + 211561 211566    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100075  99998   78  1  0   68   38    96 0.918   0.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:138456040_138675318|GENSCAN_predicted_peptide_1|734_aa
MDIQTQGHLRCNSLAFLPLRQESSERRITPAPMDNSVDSGKKTAPPLDSELEQEEPSLPG
IPVPFGPGVPRQPIGKPLFRIPAVWAGPPPGLDKGGKVTPHHKDHYLLLQPRAAPPRPDT
SSPACSSRMAAAKAEMQLMSPLQISDPFGSFPHSPTMDNYPKLEEMMLLSNGAPQFLGAA
GAPEGSGSNSSSSSSGGGGGGGGGSNSSSSSSTFNPQADTGEQPYEHLTAGRTVILGRGC
PGSPGLGARTSRGHGGAGGNPSPAQPPLRSAASCSGGGFSVFASAVVEMGSATESFPDIS
LNNEKVLVETSYPSQTTRLPPITYTGRFSLEPAPNSGNTLWPEPLFSLVSGLVSMTNPPA
SSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDIFPEPQSQAFPGSA
GTALQYPPPAYPAAKGGFQVPMIPDYLFPQQQGDLGLGTPDQKPFQGLESRTQQPSLTPL
STIKAFATQSGSQDLKALNTSYQSQLIKPSRMRKYPNRPSKTPPHERPYACPVESCDRRF
SRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD
ERKRHTKIHLRQKDKKADKSVVASSATSSLSSYPSPVATSYPSPVTTSYPSPATTSYPSP
VPTSFSSPGSSTYPSPVHSGFPSPSVATTYSSVPPAFPAQVSSFPSSAVTNSFSASTGLS
DMTATFSPRTIEIC

>gi568815593r:138456040_138675318|GENSCAN_predicted_CDS_1|2205_bp
atggacattcagacacaaggccatctgcgctgcaacagcctggccttcctgcccttgcgg
caggagtcctctgagaggcgcatcactcctgccccaatggacaactcggtagacagtggg
aaaaaaacagcacctcctctggattcagagctagagcaggaggagccttcccttcccgga
atccctgttccctttgggcccggggtccccagacagcccatagggaagcccctctttcgg
attcccgcagtgtgggccggccctccacctggactggataaaggggggaaagtgacccct
caccacaaggaccattatctcctgctccagccccgggctgcacccccccgccccgacacc
agctctccagcctgctcgtccaggatggccgcggccaaggccgagatgcagctgatgtcc
ccgctgcagatctctgacccgttcggatcctttcctcactcgcccaccatggacaactac
cctaagctggaggagatgatgctgctgagcaacggggctccccagttcctcggcgccgcc
ggggccccagagggcagcggcagcaacagcagcagcagcagcagcgggggcggtggaggc
ggcgggggcggcagcaacagcagcagcagcagcagcaccttcaaccctcaggcggacacg
ggcgagcagccctacgagcacctgaccgcaggaaggaccgtgatccttggccgtggatgt
cccggcagcccgggtttgggggcgcgcactagccgcggccatgggggtgctggcgggaat
ccctcgcccgcacagccgccgctgcggagcgctgcgagctgcagtggagggggattctcc
gtatttgcgtcagctgttgttgaaatgggctctgccactgagtcttttcctgacatctct
ctgaacaacgagaaggtgctggtggagaccagttaccccagccaaaccactcgactgccc
cccatcacctatactggccgcttttccctggagcctgcacccaacagtggcaacaccttg
tggcccgagcccctcttcagcttggtcagtggcctagtgagcatgaccaacccaccggcc
tcctcgtcctcagcaccatctccagcggcctcctccgcctccgcctcccagagcccaccc
ctgagctgcgcagtgccatccaacgacagcagtcccatttactcagcggcacccaccttc
cccacgccgaacactgacattttccctgagccacaaagccaggccttcccgggctcggca
gggacagcgctccagtacccgcctcctgcctaccctgccgccaagggtggcttccaggtt
cccatgatccccgactacctgtttccacagcagcagggggatctgggcctgggcacccca
gaccagaagcccttccagggcctggagagccgcacccagcagccttcgctaacccctctg
tctactattaaggcctttgccactcagtcgggctcccaggacctgaaggccctcaatacc
agctaccagtcccagctcatcaaacccagccgcatgcgcaagtaccccaaccggcccagc
aagacgcccccccacgaacgcccttacgcttgcccagtggagtcctgtgatcgccgcttc
tcccgctccgacgagctcacccgccacatccgcatccacacaggccagaagcccttccag
tgccgcatctgcatgcgcaacttcagccgcagcgaccacctcaccacccacatccgcacc
cacacaggcgaaaagcccttcgcctgcgacatctgtggaagaaagtttgccaggagcgat
gaacgcaagaggcataccaagatccacttgcggcagaaggacaagaaagcagacaaaagt
gttgtggcctcttcggccacctcctctctctcttcctacccgtccccggttgctacctct
tacccgtccccggttactacctcttatccatccccggccaccacctcatacccatcccct
gtgcccacctccttctcctctcccggctcctcgacctacccatcccctgtgcacagtggc
ttcccctccccgtcggtggccaccacgtactcctctgttccccctgctttcccggcccag
gtcagcagcttcccttcctcagctgtcaccaactccttcagcgcctccacagggctttcg
gacatgacagcaaccttttctcccaggacaattgaaatttgctaa

>gi568815593r:138456040_138675318|GENSCAN_predicted_peptide_2|42_aa
MEPFPPEPLRAPSLAAAGGAQGRRGSGVLRGLDACGPGLLLR

>gi568815593r:138456040_138675318|GENSCAN_predicted_CDS_2|129_bp
atggagccgtttccgccggagcctctgcgggcaccgagcctcgcagccgcgggcggggcg
caggggcgcaggggctccggggttctacgcggcctcgacgcctgcgggcccgggctcctg
ctcagatag

>gi568815593r:138456040_138675318|GENSCAN_predicted_peptide_3|1184_aa
MISASRAAAARLVGAAASRGPTAARHQDSWNGLSHEAFRLVSRRDYASEAIKGAVVGIDL
GTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYAT
KRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAEN
YLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSEDKVI
AVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTK
DNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKHLNMKLTRAQFEGIVTDLIR
RTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLFGRAPSKAVNPDEAVAIG
AAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQT
QVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTG
REQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKMEEFK
DQLPADECNKLKEEISKMRELLARKDSETGENIRQAASSLQQASLKLFEMAYKKVRVPDR
PEAGSSSRPTGQDSSTLFRAAMTHADRSTSSAKKPLSARRFFAASQAPFKPRVGPKCLAS
SRKASDVHPIQGEWTEKTTTPGGGGEKMADDPSAADRNVEIWKIKKLIKSLEAARGNGTS
MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL
VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG
SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF
ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE
VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL
HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT
DKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY

>gi568815593r:138456040_138675318|GENSCAN_predicted_CDS_3|3555_bp
atgataagtgccagccgagctgcagcagcccgtctcgtgggcgccgcagcctcccggggc
cctacggccgcccgccaccaggatagctggaatggccttagtcatgaggcttttagactt
gtttcaaggcgggattatgcatcagaagcaatcaagggagcagttgttggtattgatttg
ggtactaccaactcctgcgtggcagttatggaaggtaaacaagcaaaggtgctggagaat
gccgaaggtgccagaaccaccccttcagttgtggcctttacagcagatggtgagcgactt
gttggaatgccggccaagcgacaggctgtcaccaacccaaacaatacattttatgctacc
aagcgtctcattggccggcgatatgatgatcctgaagtacagaaagacattaaaaatgtt
ccctttaaaattgtccgtgcctccaatggtgatgcctgggttgaggctcatgggaaattg
tattctccgagtcagattggagcatttgtgttgatgaagatgaaagagactgcagaaaat
tacttggggcacacagcaaaaaatgctgtgatcacagtcccagcttatttcaatgactcg
cagagacaggccactaaagatgctggccagatatctggactgaatgtgcttcgggtgatt
aatgagcccacagctgctgctcttgcctatggtctagacaaatcagaagacaaagtcatt
gctgtatatgatttaggtggtggaacttttgatatttctatcctggaaattcagaaagga
gtatttgaggtgaaatccacaaatggggataccttcttaggtggggaagactttgaccag
gccttgctacggcacattgtgaaggagttcaagagagagacaggggttgatttgactaaa
gacaacatggcacttcagagggtacgggaagctgctgaaaaggctaaatgtgaactctcc
tcatctgtgcagactgacatcaatttgccctatcttacaatggattcttctggacccaag
catttgaatatgaagttgacccgtgctcaatttgaagggattgtcactgatctaatcaga
aggactatcgctccatgccaaaaagctatgcaagatgcagaagtcagcaagagtgacata
ggagaagtgattcttgtgggtggcatgactaggatgcccaaggttcagcagactgtacag
gatctttttggcagagccccaagtaaagctgtcaatcctgatgaggctgtggccattgga
gctgccattcagggaggtgtgttggccggcgatgtcacggatgtgctgctccttgatgtc
actcccctgtctctgggtattgaaactctaggaggtgtctttaccaaacttattaatagg
aataccactattccaaccaagaagagccaggtattctctactgccgctgatggtcaaacg
caagtggaaattaaagtgtgtcagggtgaaagagagatggctggagacaacaaactcctt
ggacagtttactttgattggaattccaccagcccctcgtggagttcctcagattgaagtt
acatttgacattgatgccaatgggatagtacatgtttctgctaaagataaaggcacagga
cgtgagcagcagattgtaatccagtcttctggtggattaagcaaagatgatattgaaaat
atggttaaaaatgcagagaaatatgctgaagaagaccggcgaaagaaggaacgagttgaa
gcagttaatatggctgaaggaatcattcacgacacagaaaccaagatggaagaattcaag
gaccaattacctgctgatgagtgcaacaagctgaaagaagagatttccaaaatgagggag
ctcctggctagaaaagacagcgaaacaggagaaaatattagacaggcagcatcctctctt
cagcaggcatcactgaagctgttcgaaatggcatacaaaaaggtgagggtcccggaccgc
ccggaggcaggttcctcatccagacctactggccaggactcctccacactattccgtgca
gccatgacgcacgcagaccgcagcacttcgtcagcgaagaagccgctgagcgcgaggcgc
ttcttcgcggcttctcaagcaccgttcaaaccgcgcgtcgggcccaagtgcctagcttcg
agtcgcaaagcctcagatgtccaccctattcaaggagaatggactgaaaagacgacgacc
ccgggaggaggaggcgagaagatggcggacgaccccagtgctgccgacaggaacgtggag
atctggaagatcaagaagctcattaagagcttggaggcggcccgcggcaatggcaccagc
atgatatcattgatcattcctcccaaagaccagatttcacgagtggcaaaaatgttagcg
gatgagtttggaactgcatctaacattaagtcacgagtaaaccgcctttcagtcctggga
gccattacatctgtacaacaaagactcaaactttataacaaagtacctccaaatggtctg
gttgtatactgtggaacaattgtaacagaagaaggaaaggaaaagaaagtcaacattgac
tttgaacctttcaaaccaattaatacgtcattgtatttgtgtgacaacaaattccataca
gaggctcttacagcactactttcagatgatagcaagtttggattcattgtaatagatggt
agtggtgcactttttggcacactccaaggaaacacaagagaagtcctgcacaaattcact
gtggatctcccaaagaaacacggtagaggaggtcagtcagccttgcgttttgcccgttta
agaatggaaaagcgacataactatgttcggaaagtagcagagactgctgtgcagctgttt
atttctggggacaaagtgaatgtggctggtctagttttagctggatccgctgactttaaa
actgaactaagtcaatctgatatgtttgatcagaggttacaatcaaaagttttaaaatta
gttgatatatcctatggtggtgaaaatggattcaaccaagctattgagttatctactgaa
gtcctctccaacgtgaaattcattcaagagaagaaattaataggacgatactttgatgaa
atcagccaggacacgggcaagtactgttttggcgttgaagatacactaaaggctttggaa
atgggagctgtagaaattctaatagtctatgaaaatctggatataatgagatatgttctt
cattgccaaggcacagaagaggagaaaattctctatctaactccagagcaagaaaaggat
aaatctcatttcacagacaaagagaccggacaggaacatgagcttatcgagagcatgccc
ctgttggaatggtttgctaacaactataaaaaatttggagctacgttggaaattgtcaca
gataaatcacaagaagggtctcagtttgtgaaaggatttggtggaattggaggtatcttg
cggtaccgagtagatttccagggaatggaataccaaggaggagacgatgaattttttgac
cttgatgactactag

>gi568815593r:138456040_138675318|GENSCAN_predicted_peptide_4|333_aa
MGYSLKAQGNEPESKNIKKSIGGEYVNSYPFKVGGVDVIAFDKMAEYLYFIMMKRLLGLP
VQSQSLPCKEFKGSDLELLSSQQMESQSSVCCWAYLGWENLRLILLTCRSQGVLLEPWEE
GVGQSLALPLVVPVLEVPVVSESMHPRPSTQQHSLAQQRVDEISGDGTHDNGVLLGESVL
RQMKFRESLSLHLLFPRFSTCVLGDQQHRVEAKPVGISYVDIEVLKKLDRNKKLLNKYDA
FLASGSLIKQIPQILGPGLNKEGRFPSLLMYSEDMVAKVDEGKSTIKFQMTDDELVYNVH
LAVNFLVSLLRKNWQNIWALHIKNTIGKPQCLY

>gi568815593r:138456040_138675318|GENSCAN_predicted_CDS_4|1002_bp
atgggctacagcctgaaggctcaaggaaatgaacctgaatctaaaaacataaagaagtcc
attggtggtgaatatgtgaacagctaccccttcaaggtgggaggggtagatgtcatcgcc
tttgacaaaatggctgaatatctttactttatcatgatgaaaagacttcttggtcttcca
gttcagagccagagcctgccttgcaaggaattcaaaggctctgatctggagctgctgtca
agccagcagatggagtcacagtcctctgtgtgctgctgggcctacctgggctgggagaat
ctcaggctaattctgctgacctgcagaagccagggtgtgctgctggagccctgggaggag
ggggttgggcagtcgctggcgctgccgctggtggtccctgtgcttgaagtgccggtggta
tcggagtccatgcacccaaggcccagcacccagcaacattctctggcccagcagagggtt
gatgagatttctggggacgggactcatgacaatggagttcttcttggagaatctgtcctt
aggcagatgaagttcagagaaagcctctccctgcatttgctgtttcccaggttctccacg
tgtgtcctgggggaccagcagcacagggttgaggccaagcctgtgggtatctcctacgtg
gacatcgaggtgctgaagaaactcgacaggaacaagaagctgctcaacaagtatgatgcc
tttctggcctcagggtctctgatcaagcagatcccacaaatcctgggcccaggcctaaat
aaggaaggcaggttcccttccctgctgatgtacagtgaagacatggtggccaaagttgat
gaggggaagtccacaatcaagttccagatgacagatgatgagcttgtgtacaacgtccat
ctggctgtcaacttcctggtatcattgctcaggaagaattggcagaacatctgggcttta
cacatcaagaacaccataggcaagccccagtgcctgtattaa

>gi568815593r:138456040_138675318|GENSCAN_predicted_peptide_5|108_aa
MEGRAGQAVLLTLDGSPPILLVRKTAAGFEFLVQRDILVLSGDEKRVRQAPLVHHNQLHA
GFNLFMRDLAVPHPQAPEFTPLLFAPGLLCWQETAWLSCLGSPVVQGS

>gi568815593r:138456040_138675318|GENSCAN_predicted_CDS_5|327_bp
atggaggggagggcagggcaagctgttctgctgacactggatggctcccctccgatcctc
ctggtcaggaagaccgcggcaggctttgagttcctggttcagagggacatattagtgctt
agtggtgatgagaaacgggtcagacaggcacctcttgtgcaccacaaccagctccacgct
ggcttcaacctgttcatgcgtgatctggcagtgccacacccgcaggcccctgaatttacg
cccctgctctttgccccagggcttctctgttggcaggaaactgcctggctttcctgcttg
ggcagcccagtggtgcagggcagttaa