GENSCAN 1.0	Date run:  4-Nov-116	Time: 01:45:32

Sequence gi568815586r:12376836_12621098 : 244263 bp : 41.96% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5399   5435   37  1  1   87   95    62 0.741   7.02
 1.02 Term +  21921  22048  128  1  2  113   48    33 0.079  -0.74
 1.03 PlyA +  22655  22660    6                               1.05

 2.04 PlyA -  23025  23020    6                               1.05
 2.03 Term -  26670  26506  165  0  0   87   36   122 0.285   3.83
 2.02 Intr -  30360  30130  231  0  0  103    7   126 0.162   3.05
 2.01 Init -  36889  36842   48  1  0   79   78    56 0.016   2.72
 2.00 Prom -  42694  42655   40                              -3.65

 3.02 PlyA -  42978  42973    6                              -0.45
 3.01 Sngl -  43287  42997  291  0  0   71   43   179 0.887   7.10
 3.00 Prom -  43341  43302   40                              -5.65

 4.02 PlyA -  43458  43453    6                               1.05
 4.01 Sngl -  44652  43999  654  0  0   43   48   333 0.991  20.72
 4.00 Prom -  46473  46434   40                              -3.45

 5.04 PlyA -  46506  46501    6                               1.05
 5.03 Term -  53042  52877  166  1  1   58   54   162 0.017   6.21
 5.02 Intr -  66767  66599  169  0  1   72    2   126 0.067   0.48
 5.01 Init -  71089  70999   91  1  1   51  106    74 0.239   6.20
 5.00 Prom -  75162  75123   40                              -4.75

 6.03 PlyA -  75272  75267    6                               1.05
 6.02 Term -  75675  75452  224  1  2   33   42   251 0.702  11.10
 6.01 Init -  77535  77460   76  0  1   62  107    43 0.259   4.90
 6.00 Prom -  78041  78002   40                              -6.85

 7.00 Prom +  78300  78339   40                              -6.55
 7.01 Init +  80037  80039    3  2  0   61  115     0 0.333   0.05
 7.02 Intr +  84737  84936  200  1  2   75   46   154 0.351   7.13
 7.03 Intr +  88430  88680  251  2  2   66   70   201 0.549  12.26
 7.04 Term +  88727  88941  215  0  2   44   37   388 0.861  25.71
 7.05 PlyA +  89281  89286    6                               1.05

 8.03 PlyA -  90068  90063    6                              -1.75
 8.02 Term -  91296  90982  315  0  0   66   42   246 0.846  11.76
 8.01 Init -  95023  94820  204  1  0   64   26   303 0.348  18.68
 8.00 Prom -  95236  95197   40                              -7.85

 9.07 PlyA -  96151  96146    6                               1.05
 9.06 Term - 101180  99998 1183  1  1  120   54  1148 0.998 104.84
 9.05 Intr - 103511 103388  124  0  1   40   94    71 0.812   1.62
 9.04 Intr - 110352 110193  160  0  1  111  111   119 0.984  15.14
 9.03 Intr - 123847 123684  164  2  2   82   98   110 0.920  10.17
 9.02 Intr - 143165 143027  139  2  1   85  110    33 0.081   4.32
 9.01 Init - 144263 144036  228  2  0   79   92   199 0.968  17.82
 9.00 Prom - 145259 145220   40                             -10.05

10.00 Prom + 146280 146319   40                              -7.25
10.01 Init + 147015 147189  175  2  1   70   28   221 0.629  13.87
10.02 Term + 151443 151585  143  1  2   91   54   148 0.899   8.81
10.03 PlyA + 151821 151826    6                               1.05

11.03 PlyA - 152451 152446    6                               1.05
11.02 Term - 161424 161401   24  0  0  100   42    26 0.476  -3.55
11.01 Init - 166483 166346  138  1  0   74   95   115 0.915  10.99
11.00 Prom - 169692 169653   40                              -8.15

12.00 Prom + 171394 171433   40                              -4.45
12.01 Init + 173644 173650    7  0  1   59   92     0 0.386  -1.31
12.02 Term + 184670 184830  161  0  2  105   39   159 0.629   9.82
12.03 PlyA + 185811 185816    6                               1.05

13.09 PlyA - 186662 186657    6                               1.05
13.08 Term - 191580 191366  215  1  2   37   42   258 0.898  12.51
13.07 Intr - 205640 205565   76  2  1   51   75    33 0.298  -3.53
13.06 Intr - 205728 205675   54  0  0   66   63    87 0.408   2.26
13.05 Intr - 219808 219648  161  2  2  126   39    79 0.266   5.59
13.04 Intr - 223415 223297  119  1  2  100   22    81 0.166   1.89
13.03 Intr - 223740 223643   98  0  2  125   40    53 0.110   2.09
13.02 Intr - 235206 235036  171  0  0   85   47   126 0.006   7.42
13.01 Intr - 240012 239915   98  1  2   76   34   112 0.272   3.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  36889  36707  183  1  0   79   43   173 0.838   4.70
S.002 Term - 143165 142971  195  2  0   85   47   116 0.825   3.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_1|54_aa
MEEGEGGAGMSHDICAILGIQAAQSIADFTFSYKAENVKISQLFIEISWSYLAT

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_1|165_bp
atggaggaaggtgaaggaggagcaggcatgtcacatgatatctgtgcgatattgggaatt
caggcagcccaatcgatagctgattttaccttttcctacaaggcagaaaatgtcaagatt
agccaactatttattgaaattagttggagttatctggctacatga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_2|147_aa
MVGGSAPRPASRPIREDQDYFKIICKKEYIQSEKALTLTVKINITNIHNSDEKIFQQLSL
SEGRKPTLSHLPGRMNAILEEQATWVPPTLQQLFPQKQEGAPHSGLGRYGAITERKSLVC
PSHGEEQLGLPQKSQQKQQTSNSETAK

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_2|444_bp
atggtgggggggtcagccccccgcccggccagccgccccatccgggaggatcaggactac
ttcaaaattatttgcaaaaaggaatatattcaaagtgagaaggccctcactcttactgtg
aaaataaacattacaaacattcacaattcagatgagaaaatctttcaacagctctcactg
agtgaaggcagaaagcccactttgtcccacttgcctggaagaatgaatgccatcctggaa
gaacaggccacttgggtgccccccacacttcagcagctgtttcctcagaagcaggaaggt
gccccccacagcggactagggagatatggggcaatcacagaaaggaaatccttggtgtgc
ccaagccacggggaagagcagctgggattgccacagaaaagccagcagaagcaacagacc
tctaacagtgaaacagccaaataa

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_3|96_aa
MGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYPSDKEL
MSKIYKEFKQIYKKKTNNPINKWAKDMNRHSSKEDI

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_3|291_bp
atgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaatctatccatcagacaaagagcta
atgtccaaaatctacaaagaattcaaacaaatttacaagaaaaaaacaaacaaccccatc
aacaagtgggcaaaagatatgaacagacactcctcaaaagaagacatctaa

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_4|217_aa
MNIDAKILNKILANRIQEHIKKLTYHDQVGFIPGMQGWFNIHKSINVIHHINRTDHKKHM
IISIDAEKAFNKIQQRFMLKTLNKLGIDGTYLKIIRAINDKPTASIIPNGQKLEAFPLKI
GTRQECSLSPLLFNTVLEVLARAIRQEKEIKDIQLGNEEVKLSLFADDMIVYLENSIISA
PNLLKLISNFSKVSGYKISVQKSQSFLYTNNRQTAKL

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_4|654_bp
atgaacatcgatgcgaaaatcctcaataaaatactggcaaaccgaatccaggagcacatc
aaaaagcttacctaccacgatcaagtcggcttcatccctgggatgcaaggctggttcaac
atacacaaatcaataaacgtaatccatcacataaacagaaccgaccacaaaaaacacatg
attatctcaatagatgcagaaaaggccttcaacaaaattcaacagcgcttcatgctaaaa
actctcaataaactgggtattgatggaacgtatctcaaaataataagagctattaatgac
aaacccacagccagtatcataccgaatgggcaaaaactggaagcattccctttgaaaatc
ggcacaagacaagaatgctccctctcaccactcctattcaacacagtgttggaagttctg
gccagggcaatcaggcaagaaaaagaaataaaggatattcaattaggaaatgaggaagtc
aaattgtccctgtttgcagatgacatgattgtatatttagaaaactccatcatctcagcc
ccaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcagtgtg
caaaaatcacaatcattcctatacaccaataacagacaaacagccaaattatga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_5|141_aa
MQQVDSEGKAPSHATNLDSLFRCPELKRGKRFLAFGRTVLVQRKCGARPKEALCSIPYSP
PNQKQPTPPPGFPATQGTSCISYRKERCMRKLSGASEDYWEPESQNEVEEGYRASPSCQV
AEAEGPEPNLSSQNKTLTSTS

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_5|426_bp
atgcagcaggtggatagtgaaggaaaggctccaagccacgccactaacctggactccctt
ttccgatgtccagaattaaagagaggtaaaagatttctggcttttggcaggacagtgctg
gtgcaaaggaagtgtggggccaggcccaaggaagccctgtgcagcataccttacagtccg
ccgaaccagaagcagcccactcccccacctggatttcctgccacccaggggaccagttgt
atttcttacagaaaagaaaggtgcatgaggaagctctccggtgcttcagaagactattgg
gagcctgaatcgcagaatgaagtggaggaaggctacagggccagcccaagctgccaggtg
gctgaagcagagggcccagaacccaaccttagctcacaaaacaaaactctcacttctacc
tcttga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_6|99_aa
MAQIKRQTMTNVSEGVKKLEPLCIAVPTRWARPSHDQGDPNLNNHGKPRLSKFYQPYGFV
ETLDKCFENVCELDLIFHVDTVHNILAEMMMGEWYWRQT

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_6|300_bp
atggctcaaattaaaaggcagacaatgacaaatgttagtgagggtgtgaagaaactggaa
cccctgtgcattgctgtgcctacccggtgggcccgacccagccacgatcaaggcgatcct
aatcttaacaatcatgggaaaccgcggctctccaagttctaccagccctatggatttgtg
gaaacattagacaaatgttttgaaaatgtttgtgaactggatttgattttccatgtagac
acggttcacaatattcttgcagaaatgatgatgggggaatggtattggagacaaacatga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_7|222_aa
MAWSPLTHKHPHGPRLLLAHDLPTQRCNLHYSHGLHGVHLHFSSSRVEEGTVKKRSNKEC
MPAAFPGREIEISGSQQGTNNAHSQNIEPGTVPSQFSSKGGSGTTVDKAVSLKGFLALGA
SCKTCQLPLDLRDCVPHRLDTRPCGEDLIKQETLFSFMQERQKRYAKYAEQIQKVNEMSA
ILRRIQMGIDQTVPLLDRLNSMLPEGERLEPFSMKPDRELRL

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_7|669_bp
atggcctggtctcctcttacacataaacatcctcatggacccaggctgcttctagctcat
gatctgccaactcaaagatgtaaccttcattattctcatggtctacatggggtgcacctg
catttcagcagcagcagagtggaggaggggacagtgaagaagagaagcaacaaagagtgc
atgccggctgcctttccaggaagggagatagaaatctcaggatctcaacaaggtacaaat
aacgcacattcccagaacatagagccagggacagtcccctctcagttctcttctaaaggt
ggttctggcacaacagttgataaagctgtgtccctgaagggctttttagccctgggtgct
tcctgtaaaacttgtcagcttccactggatctgcgggactgtgtccctcacaggctggac
acccggccctgcggagaggacttgattaaacaagaaactctgttcagcttcatgcaggag
cgccagaaaagatacgccaagtatgccgagcagatccagaaagtgaacgagatgtccgcc
atcctccgccgcatacagatgggcatcgaccagactgtgcccctgctggacaggctcaac
agcatgctgcccgagggcgagcggctggagcccttcagcatgaagcccgaccgcgagctc
aggctgtag

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_8|172_aa
MNNSGRAALRAVTLTAKVCSFTPEPATPRTHQKEETPNTSEHQKEQTPDTLPLRTVTLTV
RVRDFILETTGQAVGKDGEGEQVRLRPASHKLGPAPVSHQSPCWSLIPKPSSLWLQTKKL
VLIPGPGSGKAKGRVLREWEEPWAQRLPTPQVQEIHGNVHVMEQGLTYIHFQ

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_8|519_bp
atgaacaactctggacgcgctgccttaagagctgtaacactcaccgcgaaggtctgcagc
ttcactcctgagccagcgacaccacgaacccaccagaaggaagaaactccaaacacatcc
gaacatcagaaggaacaaactccggacacgctgcctttaagaactgtaacactcactgtg
agggtccgcgacttcattcttgaaaccacaggccaggcggttggaaaggatggtgaggga
gagcaagtacgactgagacctgcaagccacaagctgggacctgcacctgtctctcatcag
agcccgtgctggtctctcatccccaaaccttcatccttgtggctgcagaccaagaagctg
gttctcatacccggcccagggtctggaaaagccaaaggcagagttctgcgggagtgggag
gagccgtgggcccagcggctgcccacaccacaagtgcaggagatccatggtaacgtgcac
gtgatggaacagggcctgacctacatccacttccagtga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_9|665_aa
MAHEMIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQ
DKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHL
LAGGFAEFSRCFPGLCEGKSTLVPTCISQPCLPVANIGPTRILPNLYLGCQRDVLNKELM
QQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCV
LVHCLAGISRSATIAIAYIMKRMDMSLDEAYRFVKEKRPTISPNFNFLGQLLDYEKKIKN
QTGASGPKSKLKLLHLEKPNEPVPAVSEGGQKSETPLSPPCADSATSEAAGQRPVHPASV
PSVPSVQPSLLEDSPLVQALSGLHLSADRLEDSNKLKRSFSLDIKSVSYSASMAASLHGF
SSSEDALEYYKPSTTLDGTNKLCQFSPVQELSEQTPETSPDKEEASIPKKLQTARPSDSQ
SKRLHSVRTSSSGTAQRSLLSPLHRSGSVEDNYHTSFLFGLSTSQQHLTKSAGLGLKGWH
SDILAPQTSTPSLTSSWYFATESSHFYSASAIYGGSASYSAYSCSQLPTCGDQVYSVRRR
QKPSDRADSRRSWHEESPFEKQFKRRSCQMEFGESIMSENRSREELGKVGSQSSFSGSME
IIEVS

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_9|1998_bp
atggcccatgagatgattggaactcaaattgttactgagaggttggtggctctgctggaa
agtggaacggaaaaagtgctgctaattgatagccggccatttgtggaatacaatacatcc
cacattttggaagccattaatatcaactgctccaagcttatgaagcgaaggttgcaacag
gacaaagtgttaattacagagctcatccagcattcagcgaaacataaggttgacattgat
tgcagtcagaaggttgtagtttacgatcaaagctcccaagatgttgcctctctctcttca
gactgttttctcactgtacttctgggtaaactggagaagagcttcaactctgttcacctg
cttgcaggtgggtttgctgagttctctcgttgtttccctggcctctgtgaaggaaaatcc
actctagtccctacctgcatttctcagccttgcttacctgttgccaacattgggccaacc
cgaattcttcccaatctttatcttggctgccagcgagatgtcctcaacaaggagctgatg
cagcagaatgggattggttatgtgttaaatgccagcaatacctgtccaaagcctgacttt
atccccgagtctcatttcctgcgtgtgcctgtgaatgacagcttttgtgagaaaattttg
ccgtggttggacaaatcagtagatttcattgagaaagcaaaagcctccaatggatgtgtt
ctagtgcactgtttagctgggatctcccgctccgccaccatcgctatcgcctacatcatg
aagaggatggacatgtctttagatgaagcttacagatttgtgaaagaaaaaagacctact
atatctccaaacttcaattttctgggccaactcctggactatgagaagaagattaagaac
cagactggagcatcagggccaaagagcaaactcaagctgctgcacctggagaagccaaat
gaacctgtccctgctgtctcagagggtggacagaaaagcgagacgcccctcagtccaccc
tgtgccgactctgctacctcagaggcagcaggacaaaggcccgtgcatcccgccagcgtg
cccagcgtgcccagcgtgcagccgtcgctgttagaggacagcccgctggtacaggcgctc
agtgggctgcacctgtccgcagacaggctggaagacagcaataagctcaagcgttccttc
tctctggatatcaaatcagtttcatattcagccagcatggcagcatccttacatggcttc
tcctcatcagaagatgctttggaatactacaaaccttccactactctggatgggaccaac
aagctatgccagttctcccctgttcaggaactatcggagcagactcccgaaaccagtcct
gataaggaggaagccagcatccccaagaagctgcagaccgccaggccttcagacagccag
agcaagcgattgcattcggtcagaaccagcagcagtggcaccgcccagaggtccctttta
tctccactgcatcgaagtgggagcgtggaggacaattaccacaccagcttccttttcggc
ctttccaccagccagcagcacctcacgaagtctgctggcctgggccttaagggctggcac
tcggatatcttggccccccagacctctaccccttccctgaccagcagctggtattttgcc
acagagtcctcacacttctactctgcctcagccatctacggaggcagtgccagttactct
gcctacagctgcagccagctgcccacttgcggagaccaagtctattctgtgcgcaggcgg
cagaagccaagtgacagagctgactcgcggcggagctggcatgaagagagcccctttgaa
aagcagtttaaacgcagaagctgccaaatggaatttggagagagcatcatgtcagagaac
aggtcacgggaagagctggggaaagtgggcagtcagtctagcttttcgggcagcatggaa
atcattgaggtctcctga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_10|105_aa
MELDWERMMPIVHEGTQVAQKVEIREQEQVDSNNGTGSLSLIGSSQRDKIRMGQSSYLDT
LPENSGPYLLGEGPVYGGGLGRVEMEGSLDEVTGQEEIRPGIGLI

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_10|318_bp
atggaactggactgggaaagaatgatgccaattgtccatgagggtacccaggtggcacag
aaagtggaaatccgagaacaagagcaagttgattccaacaatggcactgggtctctgagt
ctgattggctcctctcaaagagataaaatccggatgggacaaagcagttatctggacacg
ctgcctgaaaactcaggaccctacctactgggagaggggccggtgtatggaggtggtctt
gggagggtagaaatggaaggatccctggatgaagttactgggcaagaggaaatacggcca
gggattggcttaatctga

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_11|53_aa
MAHYPQAHQQVSEEQGQFPTHSTVVNPSKPDIDLILLTSPHVYFSPVRETENQ

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_11|162_bp
atggcccactatcctcaagcacatcagcaggtctccgaagaacaaggacagtttcctacc
cacagtacagttgtcaaccccagtaaacctgacattgatttaatacttctaactagccca
cacgtgtatttcagtcctgtaagagagactgaaaatcagtag

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_12|55_aa
MHASVNKEVTRRRAPQRQDPSPCPKIEGFFGWLVEESSTVTTQVASLLTPKANWG

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_12|168_bp
atgcacgctagtgtaaataaagaagtcactaggcgtcgggccccccaacgccaagacccg
agcccctgtccgaaaattgagggctttttcggttggttggttgaagaaagcagcaccgtc
accacccaggtggcctcgctgcttacaccaaaggcgaactggggataa

>gi568815586r:12376836_12621098|GENSCAN_predicted_peptide_13|330_aa
XHSHHTSKPQSSSSLTLKKMGRESVTHTECEGKFASLMPESRGRGTSSGMAERTLEAAPN
ASLRRRRLLLPLHDSLWVFTDALESRRDRRVRPKYVLVTFLPMASRGRDHNFSSWSPTPP
PMLHEKSYLCSFARSPQGSSVPSQSAKMHGKAVLLFPQVPLGGEERVAPLVQVPTLEERE
ERQRGSEGKEETEKEGVKEREKERQRERGRDRDKKACCQQQQPSFTGQGVSTAPKKTTQH
SAGDPALIPLSPPNHKGHAEGERDCVQKQAYSHGIVRKLKVDKSRKKLLVDQAEAHWPKT
KEVCKLHDECLQAKKEEIIKMLSKEEETER

>gi568815586r:12376836_12621098|GENSCAN_predicted_CDS_13|993_bp
nggcacagccaccatacttccaaaccccaatcctcatcttcccttacactgaagaaaatg
ggacgagagagtgtgactcatacagaatgtgagggaaaattcgcttccctgatgccagag
tcacggggacgagggaccagttcaggaatggcagagcggaccctggaggcggccccaaac
gcctcccttcgccgccgccgcctcctcctccccctccatgacagtctctgggtgtttaca
gacgctctggagagccgccgagaccggagggtgaggcccaaatacgtgcttgtaaccttc
ctgcccatggcttccagaggacgagatcataacttctcttcatggtcgcccactcctccc
cctatgctgcatgagaaaagctacctctgcagttttgccaggtccccgcaaggcagttca
gtccccagccaaagtgctaagatgcacggcaaggctgttctcctgtttccacaggtgccc
ctgggaggggaagagagagtagctccactcgtgcaagtccctaccctagaggagagagag
gagaggcagagaggcagtgagggaaaggaagagacagaaaaagaaggagtcaaagagaga
gagaaagagaggcagagagagagaggaagagacagagacaaaaaggcatgttgccagcag
cagcagccttctttcacaggacagggagtcagtacagcaccaaagaagaccactcagcac
agtgccggagaccctgccctgattcccctttctcctcccaaccacaaaggccatgcagaa
ggtgaaagggattgtgttcaaaaacaagcgtattctcatggaattgtccgcaagctgaag
gtagacaagtcccgcaagaagctcctggtggaccaggctgaggcccactggcctaagact
aaggaagtgtgcaaacttcatgacgagtgcctccaggccaagaaggaggagatcatcaag
atgttgtccaaggaggaagagaccgagagataa