Result of FASTA (ccds) for pF1KA1370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1370, 1076 aa
  1>>>pF1KA1370 1076 - 1076 aa - 1076 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3159+/-0.00114; mu= 11.7753+/- 0.069
 mean_var=97.8980+/-19.148, 0's: 0 Z-trim(104.5): 35  B-trim: 0 in 0/49
 Lambda= 0.129625
 statistics sampled from 7934 (7954) to 7934 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.244), width:  16
 Scan time:  4.060

The best scores are:                                      opt bits E(32554)
CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15      (1076) 7179 1353.8       0
CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15      (1083) 7141 1346.7       0
CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9        ( 538)  836 167.5 6.9e-41


>>CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15           (1076 aa)
 initn: 7179 init1: 7179 opt: 7179  Z-score: 7253.1  bits: 1353.8 E(32554):    0
Smith-Waterman score: 7179; 99.9% identity (100.0% similar) in 1076 aa overlap (1-1076:1-1076)

               10        20        30        40        50        60
pF1KA1 MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 YPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 PLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 GKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SISHTKCSLLGDISDGKNLIPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQE
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS45 SISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 INENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 INENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 NSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 VLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 KSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGF
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 TAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVT
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 LFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLR
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      
pF1KA1 YLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC
             1030      1040      1050      1060      1070      

>>CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15           (1083 aa)
 initn: 7141 init1: 7141 opt: 7141  Z-score: 7214.7  bits: 1346.7 E(32554):    0
Smith-Waterman score: 7141; 99.9% identity (100.0% similar) in 1071 aa overlap (6-1076:13-1083)

                      10        20        30        40        50   
pF1KA1        MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCY
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MVFSGNKGLHREDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCY
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KA1 PVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLN
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KA1 DPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRN
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KA1 ILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNI
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KA1 GLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTA
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KA1 AVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFW
              310       320       330       340       350       360

           360       370       380       390       400       410   
pF1KA1 QSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQ
              370       380       390       400       410       420

           420       430       440       450       460       470   
pF1KA1 ENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNP
              430       440       450       460       470       480

           480       490       500       510       520       530   
pF1KA1 LIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKK
              490       500       510       520       530       540

           540       550       560       570       580       590   
pF1KA1 NKDESSVSISHTKCSLLGDISDGKNLIPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEI
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS66 NKDESSVSISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEI
              550       560       570       580       590       600

           600       610       620       630       640       650   
pF1KA1 IQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICT
              610       620       630       640       650       660

           660       670       680       690       700       710   
pF1KA1 NKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKT
              670       680       690       700       710       720

           720       730       740       750       760       770   
pF1KA1 CEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 CEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTC
              730       740       750       760       770       780

           780       790       800       810       820       830   
pF1KA1 EQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDL
              790       800       810       820       830       840

           840       850       860       870       880       890   
pF1KA1 DSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDP
              850       860       870       880       890       900

           900       910       920       930       940       950   
pF1KA1 LGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPP
              910       920       930       940       950       960

           960       970       980       990      1000      1010   
pF1KA1 SGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRH
              970       980       990      1000      1010      1020

          1020      1030      1040      1050      1060      1070   
pF1KA1 TEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFS
             1030      1040      1050      1060      1070      1080

          
pF1KA1 PRC
       :::
CCDS66 PRC
          

>>CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9             (538 aa)
 initn: 847 init1: 570 opt: 836  Z-score: 847.5  bits: 167.5 E(32554): 6.9e-41
Smith-Waterman score: 836; 54.2% identity (76.9% similar) in 225 aa overlap (850-1074:320-536)

     820       830       840       850       860       870         
pF1KA1 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
                                     :  ...  : .   :  :    : .: .::
CCDS65 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
     290       300       310       320       330       340         

     880       890       900       910       920       930         
pF1KA1 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
       ::::::.:  :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
CCDS65 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
     350       360       370       380       390       400         

     940       950       960       970       980       990         
pF1KA1 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
        :. ::..:: ::  ::.::::::::.::::::.: .:. :::: :.::::.: : ::: 
CCDS65 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
     410       420       430       440       450       460         

    1000      1010      1020      1030      1040      1050         
pF1KA1 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
       .:     .. :  :   ::: ::.::::.::.::.. :: :.::::::.:.:.:.:  ::
CCDS65 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
     470               480       490       500       510       520 

    1060      1070      
pF1KA1 LKSYTESPTNPQFSPRC
       :.. ::.: ::..::  
CCDS65 LQAVTEAPHNPRYSPLP
             530        




1076 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:30:53 2016 done: Fri Nov  4 01:30:54 2016
 Total Scan time:  4.060 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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