GENSCAN 1.0	Date run:  4-Nov-116	Time: 01:23:40

Sequence gi568815593f:172788697_173050813 : 262117 bp : 48.20% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3003   3148  146  2  2   93   42    91 0.470   3.69
 1.02 Intr +  45567  45737  171  0  0   40  105    90 0.091   4.96
 1.03 Term +  49463  49664  202  2  1   31   46   143 0.158   1.26
 1.04 PlyA +  50380  50385    6                               1.05

 2.00 Prom +  52164  52203   40                              -3.36
 2.01 Init +  63197  63199    3  1  0   86  103     0 0.252   1.30
 2.02 Intr +  64430  64733  304  1  1   73   82   172 0.194  11.26
 2.03 Intr +  78217  78508  292  2  1   46    9   235 0.121   7.59
 2.04 Intr + 100003 100064   62  1  2  143   64   117 0.085  13.18
 2.05 Intr + 108306 108378   73  1  1   81   84    84 0.051   5.76
 2.06 Intr + 112205 112394  190  2  1   91   72    95 0.256   7.79
 2.07 Intr + 117426 117484   59  2  2  126   69   -12 0.190  -1.62
 2.08 Intr + 120971 121065   95  2  2   70   65   219 0.847  17.41
 2.09 Intr + 126018 126142  125  1  2   98   86   233 0.998  24.40
 2.10 Intr + 126822 126994  173  2  2   81   66    71 0.783   2.94
 2.11 Intr + 131668 131788  121  1  1   76   60    58 0.614   2.30
 2.12 Intr + 135309 135413  105  2  0  104   99   124 0.833  15.51
 2.13 Intr + 137813 137873   61  1  1   98   50    48 0.789   0.31
 2.14 Intr + 143740 143840  101  2  2  127   91   255 0.999  29.53
 2.15 Intr + 146492 146614  123  1  0  101  113   282 0.985  32.78
 2.16 Term + 162013 162120  108  0  0  128   48   170 0.778  15.51
 2.17 PlyA + 164898 164903    6                               1.05

 3.00 Prom + 167318 167357   40                              -6.16
 3.01 Init + 171178 171345  168  0  0  104   98   311 0.788  33.23
 3.02 Intr + 179763 179903  141  2  0   87   86   225 0.998  22.75
 3.03 Term + 180717 180845  129  2  0   99   36   190 0.999  13.08
 3.04 PlyA + 181001 181006    6                               1.05

 4.00 Prom + 184642 184681   40                              -7.16
 4.01 Init + 186815 187389  575  1  2  103   70   554 0.602  49.69
 4.02 Term + 187479 187683  205  0  1  -15   39   192 0.629   0.84
 4.03 PlyA + 187977 187982    6                               1.05

 5.00 Prom + 192003 192042   40                              -4.46
 5.01 Init + 195165 195268  104  2  2  120   98    88 0.976  12.93
 5.02 Term + 198354 198507  154  0  1   41   43   102 0.105  -1.61
 5.03 PlyA + 200355 200360    6                               1.05

 6.03 PlyA - 200817 200812    6                               1.05
 6.02 Term - 245655 245513  143  1  2   61   41    79 0.576  -1.41
 6.01 Init - 247825 247708  118  1  1   82   49    93 0.793   5.22
 6.00 Prom - 260856 260817   40                              -2.56


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  94699  94560  140  1  2   74   55   176 0.907  12.51
S.002 Init +  98213  98220    8  1  2   70  109     4 0.838   0.91
S.003 Term + 100003 100072   70  1  1  143   42   126 0.911  10.91
S.004 Term + 138016 138188  173  2  2   75   44   128 0.834   5.09


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_1|172_aa
MPLTWLGTPTEATLPTSSAQEGTDCGQVDFCPMITSTKLIFPGSGPGMCGRRVASGEWRV
SGGRPAGAGRPEEALAAGSDPRGAAARLACSAPTPGGGTMPFDFRRVDVGASVINAHLQD
QCAMQLAMQDEAHNLWGPVQNENVESLVEKVLRISGRQQQRIQPSMDPPLSV

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_1|519_bp
atgcccctcacttggctgggcactccaactgaggccaccctgcccacctccagtgcccaa
gaggggacagactgtggacaggttgatttctgccccatgatcaccagcaccaagctgatc
ttccctggttcaggccctggcatgtgcgggaggcgagtggcgagtggcgagtggcgagtg
tcaggggggcggccggcgggggcggggcggccggaggaggcgttggcagcgggctcggac
ccacgcggcgccgcggcccgcctggcctgcagcgctcccacccccggcggcggcacgatg
ccctttgacttcaggagagtagatgtaggggcaagtgtgatcaatgcacacttgcaggat
caatgtgcaatgcaacttgcaatgcaggatgaggcccataatttgtggggcccagtgcaa
aatgaaaatgtggagtcccttgttgaaaaagtattaagaatttcaggacggcagcagcag
cgcattcagccaagcatggacccccctctgagtgtgtga

>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_2|664_aa
MAHKVVYHVLLLPGKVLRRMPCGMMSLAPAAPVTGERLLGLLLPPVEAATGVLATAPIAA
PIVLGAGFWKSLHTRNGSRGGGGGGGAGQATQRHLPQWSLLPEQVLVIFAEQVLNECMKK
CMNVEMKGDADGDDADGDDDADGDDADGDDADGEQWPCRVFADLGLASGCGGSASQGFEF
HLQCLPAMPPWVTFIVLPGKFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGF
ITTEVYRSCPKGLRRMSPKTYRAIERRKHHIFGVFQLSEACGPQEALQVWEQLKVTVLVF
WVAGPLWQLLCSWWPLIGANTTSKVKRSVNELYVDDPDKDSGGKIDVSLNISLPNLHCEL
VGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKNQELQILSQVGERSALGRA
EAPGGSWQGFAQHVPAFLEARYCHSGASQQRCEAAPFDRKLTSSQMSEFACFEQQRQPHQ
RPHGDLVSSASPAGGGQDGVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHG
AFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRII
PAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQL
GKMH

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_2|1995_bp
atggcccacaaggtggtttaccacgtgctgttgttgcctggaaaggtattgcgcaggatg
ccatgtggtatgatgtccctggccccagcagccccagtgactggtgagcggctcctaggt
ctgctcctgcctccagtagaagcagccacaggagtcctggccacagcccccattgcggcc
cccatcgtgctgggtgctggcttttggaaatccctgcatacccgcaacggctcccgtggt
gggggtggaggtggaggagctggtcaggccacccagaggcatcttcctcagtggagcctt
ctgccagagcaggtgctagtgatatttgcagaacaggtgctgaatgaatgcatgaaaaaa
tgcatgaatgtggaaatgaaaggggatgcagatggagatgatgcagatggagatgatgat
gcagatggagatgatgcagatggagatgatgcagatggagagcagtggccatgcagagtc
tttgcagaccttggcttggcttcaggctgtgggggctctgcaagccaagggtttgagttc
cacctccagtgcttgccagcaatgccaccttgggtgacctttatcgtgctacctggaaag
tttgacatctacaggaaggtgcccaaggaccttacgcagccaacgtacaccggggccatt
atctccatctgctgctgcctcttcatcctcttcctcttcctctcggagctcaccggattt
ataacgacagaagtgtataggagttgcccgaagggcctccgcaggatgagccctaagact
tacagagcaatcgagaggagaaagcatcacatctttggggtcttccagttgtcagaagct
tgtggcccccaggaagccctacaggtttgggaacaactgaaggtcacagttctcgtcttc
tgggtggctggccctctgtggcagctcctttgctcttggtggcctctgattggggccaac
actacaagcaaggtcaagcgcagtgtgaacgagctctatgtcgatgacccagacaaggac
agcggtggcaagatcgacgtcagtctgaacatcagtttacccaatctgcactgcgagttg
gttgggcttgacattcaggatgagatgggcaggcacgaagtgggccacatcgacaactcc
atgaagatcccgctgaacaatggggcaggctgccgcttcgaggggcagttcagcatcaac
aagaaccaggagcttcagatcctaagtcaagtgggtgaacgcagtgcccttgggagggcc
gaggcacccggtggcagctggcagggttttgctcagcacgtgccggccttcctcgaagct
cggtactgtcacagtggagcctctcaacaacgctgtgaggcagcaccatttgacaggaag
ttgaccagcagccagatgtcagagtttgcgtgttttgagcagcagcggcagcctcaccag
agaccccacggtgacctcgtttcatcagccagccccgcaggaggaggacaggatggggtc
cccggcaacttccacgtgtccacacacagtgccacagcccagccacagaacccagacatg
acgcatgtcatccacaagctctcctttggggacacgctacaggtccagaacatccacgga
gctttcaatgctctcgggggagcagacagactcacctccaaccccctggcctcccacgac
tacatcctgaagattgtgcccacggtttatgaggacaagagtggcaagcagcggtactcc
taccagtacacggtggccaacaaggaatacgtcgcctacagccacacgggccgcatcatc
cctgcaatctggttccgctacgacctcagccccatcacggtcaagtacacagagagacgg
cagccgctgtacagattcatcaccacgatctgtgccatcattggcgggaccttcaccgtc
gccggcatcctggactcatgcatcttcacagcctctgaggcctggaagaagatccagctg
ggcaagatgcattga

>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_3|145_aa
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE
RKAKSRQVGKEKGKYKEELIEKMQE

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_3|438_bp
atgaagttcaatcccttcgttacctcggaccgcagtaaaaaccgcaaacgtcacttcaat
gccccctcacacgtgcgcaggaagatcatgtcatccccgctctccaaggagctgcggcag
aagtacaatgtccgctccatgcccatccgcaaggacgacgaggtccaggtagttcgagga
cactacaaaggtcagcaaattggcaaggtagtccaggtgtacagaaagaaatatgtcatc
tacatcgagcgggtgcagcgtgagaaggccaacggcacaactgtccacgtgggcattcac
ccaagcaaggtggttatcaccaggctaaaactggacaaggatcggaaaaaaattcttgaa
cgcaaagccaagtctcgacaagttggaaaagagaaaggcaaatataaagaagaacttatt
gagaaaatgcaggaataa

>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_4|259_aa
MSGFSTEERATPFSLKYRVFLKNEKGQYMSPFQDIPIYADKDVFHVVVEVPLWSNAKMEV
ATKDPLNPIKQDVKKRKLRYVANLFPYKGYVWNYGAIPQTWEDPGHNDKHTGCCGDNDPI
DVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINMDDPDAGNYTDISDVKRLKP
GYLEATVDWFRSTHDHWKALVTKKMNGKGISCMNKTVSESLFKCDPDAARAIVDALPPPC
ESACTVPTDVDTWFHHQKN

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_4|780_bp
atgagcggcttcagcactgaggagcgcgccacgcccttctccctgaagtaccgagtcttc
ctcaaaaatgagaaaggacaatatatgtctccatttcaagatattccaatttatgcagat
aaggatgtgttccacgtggtagttgaagtaccactgtggtctaatgcaaaaatggaggtt
gctacaaaggaccctttaaaccccattaaacaagatgtgaaaaaaagaaaacttcgctat
gttgcgaatttgttcccgtataaaggatatgtctggaactatggtgccatccctcagact
tgggaagacccagggcacaatgataaacatactggctgttgtggtgacaatgacccaatt
gatgtgtgtgaaattggaagcaaggtatgtgcaagaggtgaaataattggtgtgaaagtt
ctaggcatattggctatgattgacgaaggggaaaccgactggaaagtcattgccattaat
atggatgatcctgatgcaggcaattatactgatatcagtgatgtcaaacggctgaaaccc
ggctacttagaggctactgtggactggtttagaagcactcatgaccattggaaagcatta
gtgactaagaaaatgaatggaaaaggaatcagctgcatgaacaaaactgtgtctgagagc
ctgttcaagtgtgatcctgatgctgccagagccattgtggatgctttaccaccaccctgt
gaatctgcctgcacagtaccaacagacgtggatacgtggttccatcaccagaagaactaa

>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_5|85_aa
MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGARITGMSHHARLEDTFFKQKEEQKK
LEELKVKAMGKGPLVIGGIKKSGKK

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_5|258_bp
atggcgtatcacggcctcactgtgcctctcattgtgatgagcgtgttctggggcttcgtc
ggcttcttggtgccttggttcatccctaagggtcctaaccggggtgctagaattacaggc
atgagccaccacgcccggctggaagatacattttttaaacaaaaagaggagcagaagaaa
ctggaggagctgaaagtgaaggccatggggaaggggcccctggtcataggtggaattaag
aaatccggcaaaaaataa

>gi568815593f:172788697_173050813|GENSCAN_predicted_peptide_6|86_aa
MTFAWKGSGAQEHFRYPLNGLNGGPSSLGPDKHWMECGNGRQKVNIEKVNQANTLKCTDA
QQNMKHRIINLVQVWPGFAGLWQKVQ

>gi568815593f:172788697_173050813|GENSCAN_predicted_CDS_6|261_bp
atgacgttcgcctggaagggctctggagcgcaggaacattttcggtatcctctgaacggg
ctaaatggaggtccttccagtctgggccctgacaaacactggatggagtgtggcaacgga
aggcaaaaagttaacatcgagaaagttaaccaagccaacactttaaaatgcacagatgct
caacaaaatatgaaacacaggataatcaacttggtgcaagtttggccaggttttgcaggg
ctgtggcaaaaggtccagtaa