Result of FASTA (ccds) for pF1KA1041
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1041, 622 aa
  1>>>pF1KA1041 622 - 622 aa - 622 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9338+/-0.00113; mu= -5.2490+/- 0.068
 mean_var=326.0357+/-67.117, 0's: 0 Z-trim(113.9): 91  B-trim: 377 in 1/51
 Lambda= 0.071030
 statistics sampled from 14444 (14525) to 14444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.446), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(32554)
CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1         ( 622) 4282 452.7 6.7e-127
CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1         ( 588) 2887 309.7   7e-84
CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12         ( 574)  793 95.1 2.7e-19


>>CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1              (622 aa)
 initn: 4282 init1: 4282 opt: 4282  Z-score: 2391.7  bits: 452.7 E(32554): 6.7e-127
Smith-Waterman score: 4282; 99.7% identity (99.8% similar) in 622 aa overlap (1-622:1-622)

               10        20        30        40        50        60
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERASTP
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS30 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERASTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 GSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
              550       560       570       580       590       600

              610       620  
pF1KA1 FQMRRSLPPDDIQDDFDWDSIV
       ::::::::::::::::::::::
CCDS30 FQMRRSLPPDDIQDDFDWDSIV
              610       620  

>>CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1              (588 aa)
 initn: 2887 init1: 2887 opt: 2887  Z-score: 1619.5  bits: 309.7 E(32554): 7e-84
Smith-Waterman score: 3993; 94.2% identity (94.4% similar) in 622 aa overlap (1-622:1-588)

               10        20        30        40        50        60
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERASTP
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::    
CCDS55 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVER----
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KA1 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
                                     ::::::::::::::::::::::::::::::
CCDS55 ------------------------------VTLYNTDQDGSDSPRSSLNNSLSDQSLASV
                                      180       190       200      

              250       260       270       280       290       300
pF1KA1 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KA1 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
        270       280       290       300       310       320      

              370       380       390       400       410       420
pF1KA1 GSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
        330       340       350       360       370       380      

              430       440       450       460       470       480
pF1KA1 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
        390       400       410       420       430       440      

              490       500       510       520       530       540
pF1KA1 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
        450       460       470       480       490       500      

              550       560       570       580       590       600
pF1KA1 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
        510       520       530       540       550       560      

              610       620  
pF1KA1 FQMRRSLPPDDIQDDFDWDSIV
       ::::::::::::::::::::::
CCDS55 FQMRRSLPPDDIQDDFDWDSIV
        570       580        

>>CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12              (574 aa)
 initn: 1146 init1: 562 opt: 793  Z-score: 459.9  bits: 95.1 E(32554): 2.7e-19
Smith-Waterman score: 1237; 39.5% identity (62.7% similar) in 635 aa overlap (16-621:1-573)

               10        20        30        40        50          
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
                      :.:.:::::::.:::::::.::.:.:  ....:   : :.:   .
CCDS85                MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
                              10        20        30        40     

        60        70        80        90       100       110       
pF1KA1 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
       .  :::.::...:.  :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS85 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
          50        60        70        80        90       100     

       120       130       140       150       160       170       
pF1KA1 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERA
       :: :::::::::::::::: :::: .:::::::::.::: :  :      .::     : 
CCDS85 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI----SRKR-----RH
         110       120       130       140             150         

       180       190       200       210       220       230       
pF1KA1 STPYSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSL
           ....::  .:    .: ::  ..   .....:     .:.  :. ::.   :  :.
CCDS85 PPDDDLSQDSPEQE----ASKSPRGGVAG-SGEASL---PPEGN--PQMSLQ---SPTSI
          160           170        180          190            200 

       240       250       260       270       280       290       
pF1KA1 ASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFR
       :: . ...::: . . ...     :    :   : ::  ..: .. .:: ::.::: :::
CCDS85 ASYS-QGTGSVDGGAVAAGASGRESAEGPP---PLYNT-NHDFKFSYSEINFQDLSWSFR
              210       220       230           240       250      

       300       310       320       330       340       350       
pF1KA1 SLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGL
       .::::..:.:          : :::.. .:   .  ::..   . ...:.    .. .  
CCDS85 NLYKSMLEKS----------SSSSQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQ
        260                 270       280         290       300    

       360       370       380       390        400        410     
pF1KA1 NTTGSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP
       .   .    :   :.::..  :.  :     . : : :. .    :  .:  ..  .: :
CCDS85 QQPPQPPPQQ---SQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPP
          310          320       330       340       350       360 

            420       430         440        450              460  
pF1KA1 ---QHPSPHQHIQHHPNHQHQTLTH--QAPPPPQ-QVSCNSGVSN-------DWYATLDM
          .:: : ::  .:: :::.  .:  : ::::: :.. .. ..:       :: ...: 
CCDS85 VMAMHPPPLQHGGYHP-HQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
             370        380       390       400       410       420

            470       480       490       500       510       520  
pF1KA1 LKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLI
       :::: .... .:::... :::. ::::.:::. :::.::: ..:.::.:::.:.:::: .
CCDS85 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
              430       440       450       460       470       480

            530       540       550       560       570       580  
pF1KA1 HSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTT
         :.        :. .:  :.. :. .    ...:.   : .   :.:. :.    :.  
CCDS85 PPQG--------GTHRPPAPAR-IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPM
                      490        500       510       520       530 

                   590       600           610       620  
pF1KA1 M-------AGHHRAMNQQHMMPSQAFQMRRSLPP----DDIQDDFDWDSIV
       .       ::..:    .::.:      : :.::    ..: :::::: : 
CCDS85 YPIPTQDSAGYNRPA--HHMVP------RPSVPPPGANEEIPDDFDWDLIT
             540         550             560       570    




622 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:19:10 2016 done: Fri Nov  4 01:19:11 2016
 Total Scan time:  4.050 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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