GENSCAN 1.0	Date run:  4-Nov-116	Time: 01:03:14

Sequence gi568815596f:190781085_191062983 : 281899 bp : 38.88% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5367   5477  111  1  0   59   56    73 0.194   0.63
 1.02 Intr +  12757  12828   72  2  0   70   89    38 0.491   0.56
 1.03 Intr +  28034  28085   52  0  1  120  115    32 0.357   6.15
 1.04 Term +  29690  29909  220  2  1   40   42   128 0.323  -1.07
 1.05 PlyA +  32730  32735    6                               1.05

 2.03 PlyA -  34173  34168    6                               1.05
 2.02 Term -  37131  37024  108  0  0   92   50    42 0.526  -1.67
 2.01 Init -  40383  40306   78  0  0   90  116    44 0.854   8.51
 2.00 Prom -  49806  49767   40                              -4.05

 3.00 Prom +  63349  63388   40                              -5.95
 3.01 Init +  90637  90708   72  0  0   88   65    80 0.450   6.82
 3.02 Intr +  99733  99877  145  0  1   42    9   351 0.335  21.53
 3.03 Intr +  99978 100386  409  1  1  -47   87   278 0.135   6.60
 3.04 Intr + 119480 119609  130  2  1   79   90    59 0.623   4.98
 3.05 Intr + 123960 124083  124  2  1   61   95   106 0.675   7.84
 3.06 Intr + 129179 129237   59  0  2   77   93    10 0.803  -1.92
 3.07 Intr + 139940 139972   33  1  0  103   92    39 0.779   3.30
 3.08 Intr + 143459 143509   51  1  0   96   89    19 0.293   0.99
 3.09 Intr + 146222 146398  177  1  0   30  103   124 0.507   7.29
 3.10 Intr + 149353 149484  132  0  0   59   87    33 0.503   0.22
 3.11 Intr + 150461 150553   93  1  0   82   98    39 0.797   3.54
 3.12 Intr + 172481 172542   62  1  2  125   95    29 0.017   3.91
 3.13 Term + 181746 181902  157  0  1   82   39   179 0.968   8.82
 3.14 PlyA + 182080 182085    6                               1.05

 4.20 PlyA - 182190 182185    6                               1.05
 4.19 Term - 192736 192632  105  1  0   79   29    99 0.850   0.53
 4.18 Intr - 193848 193746  103  2  1   88  101   124 0.866  12.96
 4.17 Intr - 194803 194728   76  2  1   42   84    97 0.973   2.35
 4.16 Intr - 195941 195756  186  0  0   94  115   203 0.999  22.34
 4.15 Intr - 197917 197772  146  0  2   61  101   215 0.029  19.11
 4.14 Intr - 199585 199536   50  1  2   72  100    68 0.029   2.96
 4.13 Intr - 203309 203226   84  2  0   88   94    20 0.033   1.70
 4.12 Intr - 205863 205770   94  2  1   53   58   136 0.288   6.15
 4.11 Intr - 208119 208024   96  2  0   92   60    54 0.165   1.21
 4.10 Intr - 208590 208531   60  2  0  103   60    44 0.121   0.03
 4.09 Intr - 210236 210144   93  1  0   68   77    59 0.136   0.96
 4.08 Intr - 214135 213977  159  0  0   83   78   213 0.631  17.98
 4.07 Intr - 216923 216772  152  2  2   97   99   127 0.999  12.74
 4.06 Intr - 217224 217133   92  1  2   64   63    57 0.975  -0.41
 4.05 Intr - 218620 218542   79  1  1   54   94   103 0.975   5.71
 4.04 Intr - 220079 219990   90  2  0   92  101    82 0.543   9.17
 4.03 Intr - 226577 226479   99  2  0   45   80    68 0.592   1.09
 4.02 Intr - 228023 227879  145  1  1   35   80   109 0.941   4.16
 4.01 Init - 228919 228792  128  1  2   23   95   150 0.552   8.88
 4.00 Prom - 229076 229037   40                              -6.25

 5.00 Prom + 229656 229695   40                              -9.95
 5.01 Init + 230249 230306   58  1  1   64   93    83 0.592   7.93
 5.02 Term + 232605 232960  356  1  2  -25   48   288 0.931   7.17
 5.03 PlyA + 234343 234348    6                               1.05

 6.00 Prom + 237019 237058   40                              -7.05
 6.01 Init + 239117 239186   70  1  1   61   80    75 0.958   5.26
 6.02 Intr + 239712 239783   72  1  0   56  107    69 0.928   4.06
 6.03 Intr + 240809 240951  143  0  2  102   86    66 0.965   6.95
 6.04 Term + 242314 242514  201  0  0   62   44   104 0.817  -0.19
 6.05 PlyA + 243674 243679    6                               1.05

 7.14 PlyA - 244031 244026    6                               1.05
 7.13 Term - 247720 247518  203  2  2   25   49   179 0.560   4.27
 7.12 Intr - 252065 251874  192  0  0   60   72   169 0.933  11.04
 7.11 Intr - 252542 252406  137  1  2   90   21    73 0.654   0.09
 7.10 Intr - 252921 252827   95  0  2  109  106    14 0.667   3.14
 7.09 Intr - 253513 253464   50  2  2   82   82    12 0.537  -2.52
 7.08 Intr - 255215 255080  136  2  1   76   94    61 0.870   4.72
 7.07 Intr - 258213 258115   99  0  0   86   74    52 0.879   2.99
 7.06 Intr - 258382 258263  120  1  0   66   73    56 0.744   1.67
 7.05 Intr - 260064 259981   84  0  0  108   92    65 0.630   8.00
 7.04 Intr - 277027 276934   94  0  1   49  111   104 0.908   7.85
 7.03 Intr - 277685 277626   60  1  0   90  108    11 0.499   0.23
 7.02 Intr - 280737 280645   93  2  0   72  102    53 0.894   3.26
 7.01 Intr - 281836 281678  159  0  0   62  100    94 0.563   6.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 180863 180879   17  1  2   96  101    -9 0.837   0.95
S.002 Term - 204995 204727  269  0  2   58   47   193 0.832   6.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_1|151_aa
XHCKRHMPPCRAALLPQIMPLAAASDITASRKWLTNYVLNARSPRSRCQQVWFLLKPLFL
AWHYLPKSPNDPALPQPPCATLSKKKEKERKERKGKERKGKERKGKERQKAKGMAKGKRK
GKEEKRSKIRSLRTSYHPPGLIVLQPLSPFF

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_1|456_bp
ngacattgcaaaaggcacatgccaccctgtcgtgctgccttgctcccccagatcatgccc
ttggcagctgcctcagatattactgcttccagaaagtggcttaccaactacgttctgaat
gctagaagcccaagatcaaggtgtcagcaggtttggtttctcctgaagcctctcttcttg
gcttggcattatcttccaaagagtcctaatgacccagctctgccacagccaccatgtgca
accctctcaaaaaagaaagaaaaagagagaaaggaaaggaaaggaaaggaaaggaaagga
aaggaaaggaaaggaaaggaaaggcaaaaggcaaaaggaatggcaaaaggcaaaaggaaa
ggaaaagaagaaaagagatccaaaatccgaagcctccggacctcataccaccctcctggg
ctcattgtgctccagcctctctcaccctttttctga

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_2|61_aa
MVVQRRRTQVRKKSFWLMVPFETALKLDVRQLERATTPQSQLKLFKITNPKPAYLASRVP
S

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_2|186_bp
atggttgttcagcggaggagaacacaggtgagaaagaaaagtttctggctgatggtccca
tttgagacagcactgaagctagacgtcaggcaactagagagggccactacaccccagagc
caactgaaattattcaaaataaccaatcctaaacctgcttaccttgcttcacgtgttcct
tcctag

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_3|547_aa
MSKNMVSAIDESHLMEEGITWQMSPQCGALGGAKRTGRGNPSAQQQQQQQQQQQQQQQHP
HPLRESEPEPHPTGADGPGGMMRLRGSGMLRDLLLRSPAGVSATLRRAQPLVTLCRRPRG
GGRPAAGPAAAARLHPWWGGGGWPAEPLARGLSSSPSEILQELGKGSTHPQPGVSPPAAP
AAPGPKDGPGETDAFGNSEGKELVASGEKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDE
LYESAKKQSGGKSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPM
VNAGAIVVTSLIKQGVNNAEKFDYCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLA
NGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNV
MGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRVKSVI
NLLFAAYTGDVSALRRWNNTPMDEALHFGHHDVFKILQEYQVQYTPQGDSDNGKENQTVH
KNLDGLL

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_3|1644_bp
atgtccaagaatatggtgtcagcaattgatgagagtcatctcatggaggaaggcatcaca
tggcaaatgagtcctcagtgcggagccttaggcggagcgaagagaaccggtcgcggcaat
cctagcgcgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcacccg
catccgctgcgggagtccgagccggaaccacacccaacgggcgctgacggacccggcggc
atgatgcggctgcgaggctcggggatgctgcgggacctgctcctgcggtcgcccgccggc
gtgagcgcgactctgcggcgggcacagcccttggtcaccctgtgccggcgtccccgaggc
gggggacggccggccgcgggcccggctgccgccgcgcgactccacccgtggtggggcggg
ggcggctggccggcggagcccctcgcgcggggcctgtccagctctccttcggagatcttg
caggagctgggcaaggggagcacgcatccgcagcccggggtgtcgccacccgctgccccg
gcggcgcccggccccaaggacggccccggggagacggacgcgtttggcaacagcgagggc
aaagagctggtggcctcaggtgaaaaatgtgttcagagcaacattgttttgttgacacaa
gcatttagaagaaagtttgtgattcctgactttatgtcttttacctcacacattgatgag
ttatatgaaagtgctaaaaagcagtctggaggaaagtcctgtgtaaaacctttgaaatat
gccattgctgttaatgatcttggaactgaatatgtgcatcgatatgttggaaaagagccg
agtggactaagattcaacaaactatttttgaatgaagatgataaaccacataatcctatg
gtaaatgctggagcaattgttgtgacttcactaataaagcaaggagtaaataatgctgaa
aaatttgactattgttttccagaaggcacagacatggttggtatattagacttctacttc
cagctgtgctccattgaagtgacttgtgaatcagccagtgtgatggctgcgacactggct
aatggtggtttctgcccaattactggtgaaagagtactgagccctgaagcagttcgaaat
acattgagtttgatgcattcctgtggcatgtatgacttctcagggcagtttgctttccat
gttggtcttcctgcaaaatctggagttgctgggggcattcttttagttgtccccaatgtt
atgggtatgatgtgctggtctcctcctctggataagatgggcaacagtgttaagggaatt
cacttttgtcacgatcttgtttctctgtgtaatttccataactatgataatttgagacac
tttgcaaaaaaacttgatcctcgaagagaaggtggtgatcaaagggtaaagtcagtgata
aatcttttgtttgctgcatatactggagatgtgtctgcacttcgaaggtggaataacact
cccatggatgaagcactgcactttggacaccatgatgtatttaaaattctccaagaatac
caagtccagtacacacctcaaggagattctgacaacgggaaggaaaatcaaaccgtccat
aagaatcttgatggattgttgtaa

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_4|678_aa
MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDL
LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQ
RFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR
EHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWK
RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQV
LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV
KVLFDKSAPKERPLIQPEAERPGCHDSVVIWGFFSGARFRKFNILGTHTKVMNMEESTNG
SLAAEFRHLGPLIVTEELHSLSFETQLCQPGLVIDLEVLTPAPMVSFRGRGFVRCIMGFI
SKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAV
TFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYI
KTELISVSEVHPSRLQTTDNLLPMSPEEFDEVSRIVGSVEFDSMHGLQSLEIVPSYTFLI
VVDEIGHLEKQLAIVAAK

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_4|2037_bp
atgtctcagtggtacgaacttcagcagcttgactcaaaattcctggagcaggttcaccag
ctttatgatgacagttttcccatggaaatcagacagtacctggcacagtggttagaaaag
caagactgggagcacgctgccaatgatgtttcatttgccaccatccgttttcatgacctc
ctgtcacagctggatgatcaatatagtcgcttttctttggagaataacttcttgctacag
cataacataaggaaaagcaagcgtaatcttcaggataattttcaggaagacccaatccag
atgtctatgatcatttacagctgtctgaaggaagaaaggaaaattctggaaaacgcccag
agatttaatcaggctcagtcggggaatattcagagcacagtgatgttagacaaacagaaa
gagcttgacagtaaagtcagaaatgtgaaggacaaggttatgtgtatagagcatgaaatc
aagagcctggaagatttacaagatgaatatgacttcaaatgcaaaaccttgcagaacaga
gaacacgagaccaatggtgtggcaaagagtgatcagaaacaagaacagctgttactcaag
aagatgtatttaatgcttgacaataagagaaaggaagtagttcacaaaataatagagttg
ctgaatgtcactgaacttacccagaatgccctgattaatgatgaactagtggagtggaag
cggagacagcagagcgcctgtattggggggccgcccaatgcttgcttggatcagctgcag
aactggttcactatagttgcggagagtctgcagcaagttcggcagcagcttaaaaagttg
gaggaattggaacagaaatacacctacgaacatgaccctatcacaaaaaacaaacaagtg
ttatgggaccgcaccttcagtcttttccagcagctcattcagagctcgtttgtggtggaa
agacagccctgcatgccaacgcaccctcagaggccgctggtcttgaagacaggggtccag
ttcactgtgaagttgagactgttggtgaaattgcaagagctgaattataatttgaaagtc
aaagtcttatttgataagtcagccccaaaggagaggcccctgatccaacccgaggctgaa
cgtccaggctgccatgattctgtggtcatttgggggtttttttctggagcgagatttagg
aagttcaacattttgggcacgcacacaaaagtgatgaacatggaggagtccaccaatggc
agtctggcggctgaatttcggcacctgggtcctctcatcgttactgaagagcttcactcc
cttagttttgaaacccaattgtgccagcctggtttggtaattgacctcgaggtcctaacg
ccagccccgatggtctcattccgtggacgaggttttgtaaggtgcatcatgggcttcatc
agcaaggagcgagagcgtgccctgttgaaggaccagcagccggggaccttcctgctgcgg
ttcagtgagagctcccgggaaggggccatcacattcacatgggtggagcggtcccagaac
ggaggcgaacctgacttccatgcggttgaaccctacacgaagaaagaactttctgctgtt
actttccctgacatcattcgcaattacaaagtcatggctgctgagaatattcctgagaat
cccctgaagtatctgtatccaaatattgacaaagaccatgcctttggaaagtattactcc
aggccaaaggaagcaccagagccaatggaacttgatggccctaaaggaactggatatatc
aagactgagttgatttctgtgtctgaagttcacccttctagacttcagaccacagacaac
ctgctccccatgtctcctgaggagtttgacgaggtgtctcggatagtgggctctgtagaa
ttcgacagtatgcacgggctacaatcattagagattgtaccttcctacactttcctgatt
gttgttgacgaaataggccatttagaaaaacagttagctattgtggcagcgaaatag

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_5|137_aa
MLDRQAMGAATPLISQANPEENVTDGKGWKREKVTVNGKVQCLLEENYISQVLFTARARL
ARTIVLSSAISENRWHCSHLEYSGRVLPLGSLFAGQHRRPVLARRPTARPEDSVPARPTP
GTRNLTATHSARRIRKG

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_5|414_bp
atgctggaccgtcaggcaatgggagctgcaacgcctcttattagccaagcgaacccagaa
gaaaacgtgactgatggaaaggggtggaaacgggagaaagtgacggtaaatgggaaggtg
cagtgccttctagaggaaaattatatttcacaagtcctcttcactgccagagcacgactg
gcaaggacaatcgtgctgagcagtgccatctccgagaacaggtggcactgctcgcacttg
gaatactcaggacgcgttcttcctctgggatcactattcgcgggtcagcacagacggccc
gtcctcgcccggcgtccaactgcacggcccgaggactctgtccctgcgcgtcccaccccc
ggcacccggaacctcacggccactcactctgcgcgcaggatccggaagggctag

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_6|161_aa
MSTITFAVKNRSGTLWSPSFPSAGLFYPLHFAIYTVCTCTDSDLVLSGLSSVIISSKTPS
LIASSSDCITLAILITLVKPIPVYYLSVFISPRQREGFPEPEECVNIIQVQGYMGWGWRI
ERMWQGKQREHGPSKKLKVVQSVLCADVLVDKKLLGRSEER

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_6|486_bp
atgagcactatcacattcgcggtcaaaaaccgctcaggaacgctttggagccctagcttt
ccgagcgcaggtctcttttacccgcttcacttcgctatctacacagtttgcacttgcact
gactcagatcttgtcctgtctggtctcagttcagtcatcatctcctcaaagacaccctca
ttgattgcttcttccagtgactgtatcacacttgcaatcctcataacacttgttaaacct
atccctgtttattatttgtctgttttcatctctcctcgccagcgtgaaggctttccagag
cctgaagaatgcgtaaacattatccaggtgcagggatatatgggatggggttggagaatt
gagaggatgtggcaggggaaacagagagaacatgggccatcaaagaaactgaaagtagtt
cagtcagtcttgtgtgcagatgttttggtggataagaagctgttggggaggagtgaagag
agatga

>gi568815596f:190781085_191062983|GENSCAN_predicted_peptide_7|507_aa
XFTLLAESLFQLRRQLEKLEEQSTKMTYEGDPIPMQRTHMLERVTFLIYNLFKNSFVVER
QPCMPTHPQRPLVLKTLIQFTVKLRLLIKLPELNYQVKVKASIDNNRRFVLCGTNVKAMS
IEESSNGSLSVEFRHLGCHMVTEELHSITFETQICLYGLTIDLEKVPWPSQVISVTRAPW
TSGLEVWGWLEIGPLEARVKHKINTSSLPVVMISNVSQLPNAWASIIWYNVSTNDSQNLV
FFNNPPPATLSQLLEVMSWQFSSYVGRGLNSDQLHMLAEKLTVQSSYSDGHLTWAKFCKE
HLPGKSFTFWTWLEAILDLIKKHILPLWIDGYVMGFVSKEKERLLLKDKMPGTFLLRFSE
SHLGGITFTWVDHSESGEVRFHSVEPYNKGRLSALPFADILRDYKVIMAENIPENPLKYL
YPDIPKDKAFGKHYSSQPCEAAVLSNSMELSSAQDLESSLCLLSPGDAAESVEQVMLLRH
LPCQLQKNPEPGFKMSPDCRVRDGSPL

>gi568815596f:190781085_191062983|GENSCAN_predicted_CDS_7|1524_bp
nnctttacactattggcagaaagtcttttccaactgagaaggcaattggagaaactagag
gagcaatctaccaaaatgacatatgaaggtgatcccattccaatgcaaagaactcacatg
ctagaaagagtcaccttcttgatctacaaccttttcaagaactcatttgtggttgagcga
cagccatgtatgccaacccaccctcagaggccgttggtacttaaaaccctaattcagttc
actgtaaaactaaggctactaataaaattgccagaactaaactatcaggtaaaggttaag
gcatcaattgacaacaaccgaagatttgtactttgtggaactaatgtcaaagccatgtct
attgaagaatcttccaatgggagtctctcagtagaatttcgacatttgggctgtcacatg
gtgactgaagaacttcattccataacgtttgaaacacagatctgcctctatggcctgacc
atagatttggagaaagttccatggccttcacaagtcatttcagtgaccagggcaccatgg
acatcaggactggaggtgtggggctggcttgagattggccctttagaggcgagggtcaag
cataagatcaataccagctcattgcctgtggtgatgatttccaatgtcagtcagttacct
aatgcttgggcatccatcatttggtacaacgtgtcaaccaacgattcccagaacttggtt
ttctttaataatcctccacctgccacattgagtcaactactggaggtgatgagctggcag
ttttcatcgtacgttggtcgtggtcttaactcagatcaactccatatgctggcagagaag
cttacagtccaatctagctacagtgatggtcacctcacctgggccaagttctgcaaggaa
catttacctggtaaatcatttaccttttggacatggcttgaagcaatattggatctaatt
aagaaacacattcttcccctttggattgatgggtatgtcatgggctttgttagcaaagag
aaggaacggctgttgctaaaggataaaatgcctggcacctttttattaagattcagtgaa
agccatctcggaggaataactttcacctgggtggaccattctgaaagtggggaagtgaga
ttccactctgtagaaccctacaataaaggccggttgtctgctctgccattcgctgacatc
ctgcgagactacaaagttattatggctgaaaacattcctgaaaaccctctgaagtaccta
tatcctgacattcccaaagacaaagccttcggtaaacactacagctctcagccttgcgaa
gctgctgtccttagtaatagcatggagctctccagtgctcaagacctggagagctctcta
tgcctgctgagccctggggatgctgctgaatctgttgagcaagtaatgctactgaggcat
ctgccatgccagctgcagaaaaatccagaaccaggtttcaagatgagccctgactgcaga
gtcagagatggcagccccctctga