GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:26:29

Sequence gi568815590r:116747503_116966729 : 219227 bp : 38.98% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8084   8325  242  1  2   47   92   194 0.136  12.88
 1.02 Intr +  18813  18945  133  0  1   63   34    55 0.000  -2.67
 1.03 Intr +  18962  19090  129  1  0  -17  119   105 0.006   3.07
 1.04 Intr +  19096  19289  194  0  2   -5   86   264 0.007  14.27
 1.05 Intr +  22690  22864  175  1  1   87   59    76 0.514   3.62
 1.06 Term +  23954  24340  387  1  0   97   41   225 0.604  12.65
 1.07 PlyA +  24407  24412    6                               1.05

 2.06 PlyA -  24985  24980    6                               1.05
 2.05 Term -  44669  44478  192  2  0  119   49   121 0.510   7.74
 2.04 Intr -  49170  49028  143  1  2   41   62   107 0.011   2.55
 2.03 Intr -  59244  59056  189  1  0   66   44   120 0.479   4.04
 2.02 Intr -  66644  66530  115  2  1   35   75   103 0.911   2.80
 2.01 Init -  67491  67417   75  0  0   54   95   128 0.992  11.24
 2.00 Prom -  78297  78258   40                              -2.95

 3.00 Prom +  83417  83456   40                              -5.95
 3.01 Init +  90178  90238   61  0  1   53   54   104 0.659   4.96
 3.02 Term +  91224  91495  272  1  2   89   47   177 0.949   8.36
 3.03 PlyA +  91553  91558    6                               1.05

 4.13 PlyA -  95203  95198    6                               1.05
 4.12 Term - 100189  99998  192  1  0   76   49   256 0.773  16.94
 4.11 Intr - 101527 101444   84  1  0   52   72    76 0.721   1.50
 4.10 Intr - 103265 103116  150  2  0   32   82   210 0.713  14.24
 4.09 Intr - 104594 104446  149  0  2   49   95   177 0.985  13.53
 4.08 Intr - 105206 105047  160  2  1   88   22   195 0.982  11.54
 4.07 Intr - 106966 106743  224  2  2   74   85   185 0.987  13.72
 4.06 Intr - 108786 108664  123  1  0  120  107   170 0.999  21.74
 4.05 Intr - 109269 109144  126  1  0   90   82   102 0.906   9.53
 4.04 Intr - 109971 109765  207  1  0   39   77   194 0.232  11.53
 4.03 Intr - 115757 115628  130  2  1   51   72   104 0.396   4.45
 4.02 Intr - 119239 119084  156  1  0   75   95    77 0.475   6.39
 4.01 Init - 126697 126617   81  1  0   83   49   158 0.509  10.42
 4.00 Prom - 128248 128209   40                              -9.35

 5.03 PlyA - 129138 129133    6                               1.05
 5.02 Term - 130167 129913  255  0  0   87   48   144 0.849   4.90
 5.01 Init - 137896 137831   66  1  0   90   72    64 0.593   6.12
 5.00 Prom - 142042 142003   40                              -7.35

 6.00 Prom + 149263 149302   40                              -4.15
 6.01 Sngl + 150947 152125 1179  1  0   60   45   702 0.922  58.82
 6.02 PlyA + 153184 153189    6                               1.05

 7.03 PlyA - 153733 153728    6                               1.05
 7.02 Term - 165522 165104  419  1  2    9   42   265 0.175   8.45
 7.01 Init - 176575 176518   58  1  1   68   64    17 0.099  -3.17
 7.00 Prom - 176908 176869   40                              -1.85

 8.00 Prom + 189876 189915   40                              -6.25
 8.01 Init + 190742 190951  210  1  0   88    3   222 0.140  12.58
 8.02 Term + 195056 195199  144  1  0  111   43   157 0.702  10.43
 8.03 PlyA + 196475 196480    6                               1.05

 9.04 PlyA - 197248 197243    6                               1.05
 9.03 Term - 198797 198598  200  0  2    4   32   215 0.971   4.08
 9.02 Intr - 199062 198883  180  1  0   44   80   100 0.906   3.72
 9.01 Init - 202783 202624  160  1  1   78   48   245 0.802  17.59

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  19303  18883  421  0  1   77   49   446 0.844  33.38
S.002 Term -  81058  80939  120  1  0   81   50   158 0.930   8.79
S.003 Term - 218948 218833  116  0  2   97   36   104 0.839   3.85


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_1|419_aa
MLESTSGGTGLGTALPTWARGKRTALTRPSICTCFTAESPEPPLPLPFPAAPAVELEEVA
VEPVPSLRDAIFPSRQEERETLRMCAPVRNRAPQRFSSVRTSSALRDRPFKRGHCGGSAR
WSGHDARKTEAFASVAKGASFPGETGIEGTGACVRRLLMLPGPVASVPPGMKITRQKHAK
KHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELE
TLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVK
KKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLVSVHEKESIKHLKEEQGLVKNTEQ
SRRKKRKKISGPNPLSCLKKKKKAPDTQSSASEKKRKRKRIRNRSNPKVLSEKQNAEGE

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_1|1260_bp
atgctagaaagtacgtctggtgggacggggctgggaactgcgctccccacgtgggccaga
ggaaaaagaacagcactcacaaggccatctatctgcacttgcttcacggctgaatctccc
gagccgcctttgcctttgcctttccctgctgcgccggcggtggagctggaagaggtggca
gtagagccggtaccttccttgcgggacgccatctttccaagcagacaggaagaaagagaa
acactgcgcatgtgcgcccccgtgcggaatcgcgcaccccagcggttttccagcgtacgc
acaagttccgccctaagggaccgcccctttaagcgcgggcactgcggtggaagcgcgcgc
tggtctggacatgacgcccggaagacagaggcgtttgcttccgtggccaaaggcgcttca
tttccgggtgaaactggcattgagggtactggggcgtgcgtgaggcgtttactgatgctt
cctggtccggtggcctcggtcccgccaggcatgaagatcacaaggcagaaacatgccaag
aagcatcttggcttcttccgcaacaacttcggagtccgcgagccgtaccagatcctgctg
gacggcaccttctgtcaggcggcgctgcggggccgcatccagctgcgggagcagctgccc
cgctacctcatgggggagacgcagctgtgcaccacaagatgtgtgttaaaagagctagaa
acattgggaaaggacttatatggggcaaaactgattgcacaaaaatgccaagttcgaaat
tgtcctcatttcaagaatgcagtgagtggatcagaatgtctgctttccatggttgaagag
ggaaatcctcatcattattttgtggcaacacaggatcagaatttgtctgtgaaagtaaaa
aagaagcctggagttcctctcatgtttattattcagaacactatggttttggacaaacct
tctcccaaaacaattgcctttgtaaaagcagtggagtcaggtcagcttgtctcagtgcat
gagaaagaaagtatcaaacatctcaaagaggaacagggtttagtgaaaaacactgaacag
agtagaagaaaaaagcgcaagaaaataagtggtcccaatcctcttagttgtttgaagaaa
aagaaaaaggcaccggacacacaatcatctgcttctgaaaagaaaagaaaaagaaaaaga
attcggaacagatctaacccaaaagtactttctgagaagcagaatgcagaaggagaatga

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_2|237_aa
MRPDIYQVPTRHEDNDVEMDELGTQWCDSGKLLSISNLYVFTGNTGIMMPYSGPESSVVT
TEGDPYGRVAEWTDLHTSIAPGQTGLKLVCSKGNIAPQDHFTGCILSHPTEKFLLNSVSV
NPKNASYAEKSFDHVQYPFMIKALNKLNIEEMYLNTLKAIYDKSKINIIFNGEKASHSEL
SLNTPQIRLSSCKGLELHVNFESTQSLVLQLVISKQVNNNRASGLLREKKAEVQGGP

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_2|714_bp
atgagacctgatatttaccaagttccaacaagacatgaagataatgatgtggaaatggat
gaactgggcacacagtggtgtgattcaggcaagttgcttagcatctccaatctctatgtc
tttaccggtaacactgggatcatgatgccctactcaggaccagagagctctgtggtgaca
actgaaggagacccttatggcagagtggctgagtggacagatttgcacacaagcattgca
cctggacaaacaggactcaaacttgtctgctccaagggcaatattgctccacaggatcat
tttactggctgcatcctcagccatccaacagagaaattccttctcaactcagtgtctgta
aaccccaagaatgcctcttatgcagaaaaatcatttgaccacgtacaatatcctttcatg
ataaaagctctcaacaaattaaacatagaagaaatgtacctcaacacattaaaggcaatc
tatgacaagtccaaaattaatatcatattcaatggtgaaaaggcaagtcattcagaatta
tcgcttaacacccctcaaattagactctccagttgtaaaggcctagagctacatgtgaat
tttgagagcactcagtcccttgtactccaacttgtcattagtaaacaagttaataataat
cgcgccagtggattgttacgtgagaagaaggctgaagtccagggtggtccctag

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_3|110_aa
MVKEQKSSFVGEDEEVSSGDERPYFSALCGGKQLSKLVHPLNHHPYCPFKPELCLPLSFP
NSWASFKAQYLSLRPEMFPDSPIRVPNTCCIAQSGIYKIVSIAFLFICVS

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_3|333_bp
atggtgaaggagcagaagagctcatttgtgggtgaagatgaggaggtcagctctggagat
gaaaggccctatttttctgcactctgtggagggaaacagctcagcaagcttgttcacccc
ctgaaccatcacccatactgtccctttaaaccagaactctgcttgccactctcctttcct
aactcttgggcatccttcaaggctcagtatttgtcacttcgtccagaaatgtttcctgac
tccccaatccgagtccctaatacctgctgcatagcccaatccggcatctataaaattgtt
tcaattgcattcttattcatctgtgtctcctaa

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_4|593_aa
MAVWEEAVAGPAPAVPAPGAATFRRTRPARTMFYAHFVLSKRGPLAKIWLAAHWDKKLTK
AHVFECNLESSVESIISPKVKMALRTSGHLLLGVVRIYHRKAKYLLADCNEAFIKIKMAF
RPGDFGMDDREIMREGSAFEDDDMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDD
NFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSP
DSVDPVEPMPTMTDQTTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIR
AQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVP
EDLRKRRKGGEADNLDEFLKEFENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEA
SRTNIDESAMPPPPPQGVKRKAGQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIPE
LELLPEKEKEKEKEKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAES
ISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRFHII

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_4|1782_bp
atggctgtctgggaggaggcggtggcgggcccggcgcccgcggtgccagccccgggagca
gcaaccttccgccgaactcggccagccagaacaatgttctacgcacattttgttctcagt
aaaagagggcctctggccaaaatttggctagcggcccattgggataagaagctaaccaaa
gcccatgtgttcgagtgtaatttagagagcagcgtggagagtatcatctcaccaaaggtg
aaaatggcattacggacatcaggacatctcttactgggagtagttcgaatctatcacagg
aaagccaaataccttcttgcagactgtaatgaagcattcattaagataaagatggctttt
cggccaggtgattttggaatggatgatcgtgagataatgagagaaggcagtgcttttgag
gatgacgacatgttagtaagcactactacttctaacctcctattagagtctgaacagagc
accagcaatctgaatgagaaaattaaccatttagaatatgaagatcaatataaggatgat
aattttggagaaggaaatgatggtggaatattagatgacaaacttattagtaataatgat
ggcggtatctttgatgatccccctgccctctctgaggcaggggtgatgttgccagagcag
cctgcacatgacgatatggatgaggatgataatgtatcaatgggtgggcctgatagtcct
gattcagtggatcccgttgaaccaatgccaaccatgactgatcaaacaacacttgttcca
aatgaggaagaagcatttgcattggagcctattgatataactgttaaagaaacaaaagcc
aagaggaagaggaagctaattgttgacagtgtcaaagagttggatagcaagacaattaga
gcccaacttagtgattattcagatattgttactactttggatctggcaccgcccaccaag
aaattgatgatgtggaaagagacaggaggagtagaaaaactgttttctttacctgctcag
cctttgtggaataacagactactgaagctctttacacgctgtcttacaccgcttgtacca
gaagaccttagaaaaaggaggaaaggaggagaggcagataatttggatgaattcctcaaa
gaatttgaaaatccagaggttcctagagaggaccagcaacagcagcatcagcagcgtgat
gttatcgatgagcccattattgaagagccaagccgcctccaggagtcagtgatggaggcc
agcagaacaaacatagatgagtcagctatgcctccaccaccacctcagggagttaagcga
aaagctggacaaattgacccagagcctgtgatgcctcctcagcaggtagagcagatggaa
ataccacctgtagagcttcccccagaagaacctccaaatatctgtcagctaataccagag
ttagaacttctgccagaaaaagagaaggagaaagagaaggaaaaagaagatgatgaagag
gaagaggatgaagatgcatcagggggcgatcaagatcaggaagaaagaagatggaacaaa
aggactcagcagatgcttcatggtcttcagcgtgctcttgctaaaactggagctgaatct
atcagtttgcttgagttatgtcgaaatacgaacagaaaacaagctgccgcaaagttctac
agcttcttggttcttaaaaagcagcaagctattgagctgacacaggaagaaccgtacagt
gacatcatcgcaacacctggaccaaggttccatattatataa

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_5|106_aa
MAEGDGEAGTSYVAGAGGREQRLGILTTILNANFLKSPLKTNQKNIKYLANYNRNSLDKA
LSCGQYGHLANGLQPVRRTLPQPKNSGPTVSGAQDCPLSYPSPISA

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_5|321_bp
atggcggaaggtgatggggaagcaggcacatcttacgtggctggagcaggaggaagagag
caaaggcttgggattttaacaactatccttaatgccaatttcttaaagtctccattaaaa
acaaaccaaaagaacataaaatatttggctaactacaacagaaattcacttgataaagct
ttgagctgtggccagtatggccacttagctaatggactccagccagtgagacgaaccttg
ccccaacccaaaaacagtggacccacagtgagtggagcacaagactgtccactttcttat
ccatctcctatatcagcataa

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_6|392_aa
MWKRLRNWVTSRGWNSLEGSEKDRKMWESLELPRDLLNGFDENADSDTKNKVQAEVVSDG
DEELVGNWSQGDSCYVLAKRLAGFCPCPKDLWNFELEKDDLGYLAEKMSKQQSIQDVTWA
LLKAFSFERETEHRSLENFQPDNVIEKKNPFSGEKFKPATEICISSKEPNANPQDHGENV
SRSCHRPSWQPLPSQAQKPRRKKCFCGLGPGLPSCVQPRDLVPCVSAALVMAERGQCTAW
AVGSEGGSPKPWQPPHDVEPVGAEKSRIEVWEPLPRFQKMYGNVWMPRQKFAAGAGPSWR
TSARSVWKGNVGLGSSHRVPTGALTSGAVGRGPPSSRSQNGRSTDSMHHAPGKATDTRRH
PMKAARREAVPCKATGVELPKTTGTHFLHQLD

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_6|1179_bp
atgtggaagcgacttaggaactgggtaacaagcagaggttggaacagtttggagggctca
gaaaaagacaggaaaatgtgggaaagtttggaacttcctagagacttgctgaatggtttt
gatgaaaatgctgatagtgacacgaaaaataaggtccaggctgaggttgtctcagatgga
gatgaggaacttgttgggaactggagccaaggtgactcctgttatgttttagcaaagaga
ctggcagggttttgcccctgccctaaagatttgtggaactttgaacttgagaaagatgat
ttagggtatctggcggaaaaaatgtctaagcagcaaagcattcaagatgtgacttgggcg
ctgttaaaagcattcagttttgaaagggaaacagagcatagaagtttggaaaatttccag
cctgacaatgtgatagaaaagaaaaacccattttctggagagaaattcaagccagctaca
gaaatttgcataagtagcaaggagcctaatgctaatccccaagaccatggggaaaacgtc
tccaggtcatgtcacagaccttcatggcagcctctcccatcacaggcccagaagcctagg
agaaagaagtgtttttgtgggctgggcccagggctgccaagctgtgtgcagcctagagac
ttggtgccctgtgtctccgctgctctagtcatggctgaaagaggccaatgtacagcttgg
gctgtgggttcagagggtggaagtcccaagccttggcagcctccacatgatgttgagcct
gtgggtgcagagaagtcaagaattgaggtttgggaacctctgcctagatttcagaagatg
tatggaaatgtctggatgcccaggcaaaagtttgctgcaggggcagggccctcatggaga
acctctgctaggtcagtgtggaagggaaatgtggggttggggtcctcacacagagtccct
actggggcactgactagtggagctgtgggaagagggccaccatcctccaggtcccagaat
ggtagatccactgacagcatgcaccatgcacctggaaaagccacagacactcgacgccat
cccatgaaagcagccagaagggaggctgtaccctgcaaagccacaggggtggagctgccc
aagaccacgggaacccacttcttgcatcagcttgactag

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_7|158_aa
MTRMGVVAHACNHSTLGGREPLAEGVAIVSAGSADSVFPPAGSEESGQSGRVGFPPAQHT
RLSKGQSECFLKRILDPMPPDWMRSPSRGRQTLYRGAFPLAQVGASLGGSSQRKEQAAIS
AVLQPPLISPGKGGTQVNRAWSGPPANHSSPTEEGPDC

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_7|477_bp
atgaccaggatgggcgtggtggctcatgcctgtaatcacagcactttgggaggccgagag
ccccttgcagaaggagtggccatagtctccgcaggatcagctgactcagtctttccccct
gctggctctgaggaatccgggcagtccggaagagtgggattcccaccagcacagcacacc
cgcttgtccaaggggcagtcagagtgcttccttaaacggatcctggatcccatgcctcct
gactggatgagatcccccagtagaggtcgccagacactttataggggagcgttcccactg
gctcaggtaggtgcttctctgggtgggagctcccagaggaaggagcaggcagccatctct
gctgttctgcagcctccactgatatctccagggaagggaggcacccaggtgaatagggcc
tggagtggacccccagcaaaccacagcagccctacggaagaggggcctgactgttaa

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_8|117_aa
MGPGDFRRCRERISQGLQGLPGRAELWFPPRPACDFFGDGRSTDIQEEALAASPLLEDLR
RRLTRAFQWAVEMHFQNHQLARTLLDLNMKVQQLKKEYELEITSDSQSPKDDAANPE

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_8|354_bp
atgggccccggggacttccgccgctgcagagagagaatttcccaggggctccagggactc
ccaggtagagcggagctttggttcccacctcgtcccgcgtgcgacttcttcggggacggc
aggagcacggacatccaggaggaggccctcgccgccagcccgctgctggaggacctcaga
cgacggctgacgcgcgccttccagtgggcggtggaaatgcatttccaaaaccaccagctg
gctagaactttactggacctaaacatgaaagtgcagcaattgaaaaaggagtatgaactg
gaaattacatcagactcccaaagcccaaaagatgatgctgcgaatccggaataa

>gi568815590r:116747503_116966729|GENSCAN_predicted_peptide_9|179_aa
MLAALAALARSQRLLGLGVRSGHAREALQPDTALWGPLSGLANAGASSLCLWGGRGEALS
PPICINVRIRKQMRGTQPPEKQCLTQATVIGVHPSESYCPALSSDGTRGCQTRGNRGCGN
GSSSNSESNQERRQLALEGIVPGSRHRGILAVITAVNRADGCAGTLGPARKGAGEMRFL

>gi568815590r:116747503_116966729|GENSCAN_predicted_CDS_9|540_bp
atgctggcagccctcgcagcccttgctcgctctcagcgcctcctcggcctcggcgtccgc
tctgggcatgctcgagaagcccttcagcccgacactgcgctctgggggcccctctctggg
ctggccaatgcgggagccagctccctctgcttgtggggaggaagaggtgaagccctctca
cccccaatatgcatcaatgtcagaatcaggaagcagatgagaggtacacagccccctgag
aagcagtgcttgacacaggctactgtaataggtgtccacccatctgaatcctactgccca
gcactcagctcagatggaacaagaggctgccagacgagaggaaacagaggctgcggcaat
ggcagcagcagcaacagtgaaagcaaccaagagagaaggcagctggcactggagggcatc
gtgccaggttccaggcacagagggattctggcagtgattacagcggtaaatagagctgat
ggttgtgccgggaccctaggccctgccaggaagggagcaggggagatgagattcttataa