Result of FASTA (ccds) for pF1KA0013
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0013, 1023 aa
  1>>>pF1KA0013 1023 - 1023 aa - 1023 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5757+/-0.00123; mu= 10.5211+/- 0.073
 mean_var=120.8982+/-24.090, 0's: 0 Z-trim(104.1): 118  B-trim: 0 in 0/50
 Lambda= 0.116644
 statistics sampled from 7589 (7709) to 7589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.237), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS10028.1 ARHGAP11A gene_id:9824|Hs108|chr15     (1023) 6690 1138.1       0
CCDS66730.1 ARHGAP11A gene_id:9824|Hs108|chr15     ( 834) 5422 924.7       0
CCDS58349.1 ARHGAP11A gene_id:9824|Hs108|chr15     ( 501) 3258 560.4 3.2e-159
CCDS32185.1 ARHGAP11B gene_id:89839|Hs108|chr15    ( 267) 1440 254.4 2.3e-67


>>CCDS10028.1 ARHGAP11A gene_id:9824|Hs108|chr15          (1023 aa)
 initn: 6690 init1: 6690 opt: 6690  Z-score: 6088.3  bits: 1138.1 E(32554):    0
Smith-Waterman score: 6690; 100.0% identity (100.0% similar) in 1023 aa overlap (1-1023:1-1023)

               10        20        30        40        50        60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 VENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 HTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 EEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 RIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSLNEPNRIKVKSPLKFQRTPVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSLNEPNRIKVKSPLKFQRTPVRQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 SVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGP
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 KEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVKV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 PLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKP
              970       980       990      1000      1010      1020

          
pF1KA0 VDL
       :::
CCDS10 VDL
          

>>CCDS66730.1 ARHGAP11A gene_id:9824|Hs108|chr15          (834 aa)
 initn: 5422 init1: 5422 opt: 5422  Z-score: 4936.5  bits: 924.7 E(32554):    0
Smith-Waterman score: 5422; 100.0% identity (100.0% similar) in 834 aa overlap (190-1023:1-834)

     160       170       180       190       200       210         
pF1KA0 SCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEK
                                     ::::::::::::::::::::::::::::::
CCDS66                               MDSSNLAVIFAPNLLQTSEGHEKMSSNTEK
                                             10        20        30

     220       230       240       250       260       270         
pF1KA0 KLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYK
               40        50        60        70        80        90

     280       290       300       310       320       330         
pF1KA0 RKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFS
              100       110       120       130       140       150

     340       350       360       370       380       390         
pF1KA0 SKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVP
              160       170       180       190       200       210

     400       410       420       430       440       450         
pF1KA0 RRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYES
              220       230       240       250       260       270

     460       470       480       490       500       510         
pF1KA0 VGWRLANQQSLKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VGWRLANQQSLKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRM
              280       290       300       310       320       330

     520       530       540       550       560       570         
pF1KA0 SWTGPNNSSFQEVDANEASSMVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SWTGPNNSSFQEVDANEASSMVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNI
              340       350       360       370       380       390

     580       590       600       610       620       630         
pF1KA0 TSSPLSGDENNMTKETLVKVQKAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TSSPLSGDENNMTKETLVKVQKAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSP
              400       410       420       430       440       450

     640       650       660       670       680       690         
pF1KA0 EENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEH
              460       470       480       490       500       510

     700       710       720       730       740       750         
pF1KA0 EKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEA
              520       530       540       550       560       570

     760       770       780       790       800       810         
pF1KA0 RSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSL
              580       590       600       610       620       630

     820       830       840       850       860       870         
pF1KA0 NEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGA
              640       650       660       670       680       690

     880       890       900       910       920       930         
pF1KA0 LSSCIESASKDSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LSSCIESASKDSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVN
              700       710       720       730       740       750

     940       950       960       970       980       990         
pF1KA0 ASLRSTTVYKQKILSDGQVKVPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ASLRSTTVYKQKILSDGQVKVPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRA
              760       770       780       790       800       810

    1000      1010      1020   
pF1KA0 WYKGSPKHPIGKTQLLPTSKPVDL
       ::::::::::::::::::::::::
CCDS66 WYKGSPKHPIGKTQLLPTSKPVDL
              820       830    

>>CCDS58349.1 ARHGAP11A gene_id:9824|Hs108|chr15          (501 aa)
 initn: 3258 init1: 3258 opt: 3258  Z-score: 2971.9  bits: 560.4 E(32554): 3.2e-159
Smith-Waterman score: 3258; 99.8% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
       :::::::::::::::.                                            
CCDS58 LLFSPDVDEKLPKKGTFTYYC                                       
              490       500                                        

>>CCDS32185.1 ARHGAP11B gene_id:89839|Hs108|chr15         (267 aa)
 initn: 1439 init1: 1439 opt: 1440  Z-score: 1322.8  bits: 254.4 E(32554): 2.3e-67
Smith-Waterman score: 1440; 95.2% identity (97.0% similar) in 231 aa overlap (1-231:1-226)

               10        20        30        40        50        60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS32 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS32 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
       ::::::::::::::::::::::::::::::::::::.:::     .: :::         
CCDS32 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKK-----GVYQTLSWKRYQPCW
              190       200       210       220            230     

              250       260       270       280       290       300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
                                                                   
CCDS32 VLMVSVLLHHWKALKKVNMKLLVNIREREDNV                            
         240       250       260                                   




1023 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:21:07 2016 done: Fri Nov  4 00:21:08 2016
 Total Scan time:  4.120 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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