GENSCAN 1.0	Date run:  5-Nov-116	Time: 09:54:46

Sequence gi568815592r:34438277_34644455 : 206179 bp : 49.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    328    399   72  1  0  107   67    72 0.971   5.52
 1.02 Intr +    845    940   96  2  0   69   69   118 0.800   7.12
 1.03 Intr +  10184  10222   39  2  0  125  103    31 0.858   5.64
 1.04 Term +  10940  11054  115  2  1   53   42    99 0.795  -0.16
 1.05 PlyA +  11713  11718    6                               1.05

 2.00 Prom +  12372  12411   40                              -6.56
 2.01 Init +  17470  17476    7  0  1  114  100     0 0.372   4.99
 2.02 Intr +  27848  27994  147  0  0  133   91    80 0.849  13.01
 2.03 Intr +  34439  34481   43  0  1  138  116    -5 0.498   4.60
 2.04 Intr +  47993  48128  136  2  1   78  111    40 0.072   5.87
 2.05 Intr +  49922  50045  124  1  1   91   37    25 0.071  -2.14
 2.06 Term +  51468  51535   68  1  2  104   44    77 0.250   3.00
 2.07 PlyA +  54651  54656    6                               1.05

 3.04 PlyA -  55879  55874    6                               1.05
 3.03 Term -  57855  57685  171  0  0   87   44    63 0.171  -0.37
 3.02 Intr -  59334  59251   84  0  0   47  105    27 0.102   0.32
 3.01 Init -  76949  76860   90  2  0   62   62   152 0.347   8.49
 3.00 Prom -  79112  79073   40                              -7.96

 4.05 PlyA -  80534  80529    6                               1.05
 4.04 Term -  82429  82317  113  2  2  108   50   107 0.914   7.62
 4.03 Intr -  82938  82786  153  1  0   90   92    94 0.817  10.04
 4.02 Intr -  83575  83473  103  1  1  109   43    17 0.573  -0.95
 4.01 Init -  84674  84609   66  2  0   56  113     6 0.337   0.98
 4.00 Prom -  85238  85199   40                              -7.16

 5.00 Prom +  86095  86134   40                             -11.14
 5.01 Init +  88030  88092   63  0  0   72   78   106 0.955   9.15
 5.02 Intr +  89056  89212  157  0  1   35   42   446 0.855  34.28
 5.03 Intr +  90366  90601  236  1  2   90   32   428 0.684  34.81
 5.04 Intr +  91121  91276  156  1  0  108   48   236 0.919  21.81
 5.05 Intr +  91390  91613  224  0  2   90   46   414 0.679  34.33
 5.06 Intr +  91967  92087  121  2  1   38   78   160 0.999  10.50
 5.07 Intr +  92184  92311  128  2  2   79  109   113 0.999  11.98
 5.08 Intr +  93324  93511  188  0  2   69   74   428 0.992  38.83
 5.09 Term +  94145  94254  110  0  2  122   44   213 0.999  18.97
 5.10 PlyA +  97956  97961    6                               1.05

 6.08 PlyA -  99547  99542    6                               1.05
 6.07 Term - 100176  99998  179  1  2   71   48   457 0.998  37.85
 6.06 Intr - 101120 100974  147  0  0   63   84   181 0.991  15.41
 6.05 Intr - 101286 101239   48  1  0  112   77    17 0.758   1.65
 6.04 Intr - 102905 102708  198  0  0   33   91   324 0.967  26.52
 6.03 Intr - 105332 105252   81  0  0   96   58    40 0.721   1.41
 6.02 Intr - 106380 105744  637  0  1   83   99   640 0.360  56.27
 6.01 Init - 112764 112669   96  0  0   65   61    92 0.160   2.52
 6.00 Prom - 114799 114760   40                              -7.86

 7.00 Prom + 115348 115387   40                              -8.86
 7.01 Init + 116659 116734   76  0  1   62   66   130 0.627   7.54
 7.02 Intr + 116958 116992   35  1  2  128   69    24 0.595   2.44
 7.03 Intr + 119085 119285  201  2  0   69   45   104 0.511   3.68
 7.04 Intr + 120995 121065   71  1  2   73   76    58 0.324   1.08
 7.05 Intr + 129161 129278  118  2  1   42   72    49 0.069  -0.83
 7.06 Intr + 131828 132042  215  1  2   39   94   157 0.388   8.91
 7.07 Intr + 134405 134562  158  2  2   64   89   115 0.852   8.85
 7.08 Intr + 137989 138225  237  2  0   60    9   200 0.229   6.89
 7.09 Term + 140670 140734   65  1  2   71   55    77 0.437   0.75
 7.10 PlyA + 141224 141229    6                               1.05

 8.06 PlyA - 141435 141430    6                               1.05
 8.05 Term - 145894 145743  152  2  2  117   29    89 0.599   3.97
 8.04 Intr - 150000 149889  112  0  1  113   89    -9 0.636   1.65
 8.03 Intr - 155783 155676  108  2  0   63   81    86 0.697   5.88
 8.02 Intr - 168628 168279  350  2  2   77  100   116 0.709   6.78
 8.01 Init - 168930 168894   37  0  1   59  107    30 0.830   2.18
 8.00 Prom - 175600 175561   40                              -5.26

 9.00 Prom + 176262 176301   40                              -8.16
 9.01 Init + 178262 178375  114  1  0  110   44   148 0.926  12.81
 9.02 Intr + 192892 192966   75  0  0   72   91    24 0.047   0.81
 9.03 Term + 196602 196709  108  2  0   44   40    67 0.033  -3.99
 9.04 PlyA + 196749 196754    6                               1.05

10.02 PlyA - 198715 198710    6                               1.05
10.01 Term - 199644 199545  100  2  1   26   42   231 0.992   9.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_1|107_aa
XSLDKALILSTNCQSEKSLNPPNERAVTLTTKIRGFIFEVSETKNPPEGANSGHTDLLSQ
GWQGIRPYRWSTGKADAIWRFHFLSHGTGSLQIGEQALSLTPAVFCA

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_1|324_bp
nngtctttagacaaagctttaattctttcaaccaactgccaatcagaaaaatctttgaat
ccacctaatgaaagagctgtaacactcaccaccaagatccgtggcttcatttttgaagtc
agcgagaccaagaacccaccagaaggagccaattctggacacactgacctgctctcccag
ggctggcagggcatacggccctatcggtggagcactggcaaggctgatgccatatggcgg
ttccacttcctcagccatggaactggatctttgcaaattggagagcaggcgctgagcctc
actcctgctgtcttctgtgcctga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_2|174_aa
MPTPARSQSDAVAAAAPAPSSPGKSAGLEAGPQTSRFAPSRRRWSPELLPPGLWCLKPGG
MGKGVRAQLSAEREGGGGVVKYLSPMWFSQPWGEVGAIIPALKMRKQEGGQTLTIALSHF
PSIPGKGAPRDVPGNYLAAKAIILPCPLPYKQWGHDASLGPQTNVHVDPMSDSL

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_2|525_bp
atgcccaccccggcgagatcccagagcgacgcggtggcggcggcagcgccagccccctcc
tcccccgggaagtcggccgggcttgaggccgggccccagacgtcccgcttcgccccgagt
cgccgccgatggtccccggagctcctgcccccaggcctgtggtgcctgaaacctggcggg
atgggaaagggggtaagagcacagctgtcagctgagagggagggaggaggaggtgttgta
aaatatttgtctccaatgtggttctcacagccatggggtgaagtaggtgccatcatcccc
gctttgaagatgagaaaacaggaagggggccagaccctgaccattgccctttcccatttc
ccatcaataccaggcaagggagcaccaagagatgtcccagggaattacctggctgccaag
gctattattcttccctgccccttgccatacaaacagtggggccacgatgcctctttgggt
ccccagaccaatgtccatgtggaccctatgtctgacagtctttga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_3|114_aa
MLAAPHTPLPSLVPGPAPPAGLFGSYQVPLNQRGVAAWGQGWGTHTLGGDSKKEEELKAA
FSPMAQSPASAQLAASLLSSYNHTGEQQAAGFIPVVGMGKLRLSFTKDKGPVNS

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_3|345_bp
atgctggctgcgccccacaccccgctccccagcctggtccctggcccggcccctccagct
ggcctgtttggctcctatcaggtgccgctgaatcagagaggtgtggctgcctgggggcag
ggctggggcacgcacacccttggaggggattccaagaaggaggaagagctcaaggctgcc
tttagtcctatggcacaatcacctgcatctgcacaacttgctgcctctctgctctccagc
tacaaccacacaggggagcagcaggcagctggcttcatccctgttgtagggatggggaaa
ctgaggctcagcttcaccaaggataaggggcctgtaaacagttga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_4|144_aa
MQCGRAPPNRLRAQREGKGRGKASASASVKWAVARIKRSTRPRATGPRLTHGELSTALVT
TGHGIHSTAFITLRVLLPTGMSLSPVSGVYLSGYLPYFQHPVQCRQHRVLQHAGGINNTT
IFERLLCAIVSASSHALSPNLTAH

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_4|435_bp
atgcaatgtgggcgggcaccacccaatcggctgagggcccagagagaaggaaaaggcaga
ggaaaggcctcggcgtccgcatctgtaaaatgggctgttgcaaggattaaacggagcact
agacctcgggccactggaccgcgcctgacacacggcgagctctccacagccctcgtcacc
accggacacggcatccacagcacggcattcatcacgttgcgtgtcctccttcccacagga
atgtcacttagtccagtcagcggtgtttatctgtctggttatctgccgtatttccagcat
ccagtgcagtgccggcaacatagggtactgcagcacgcaggcggcatcaacaacacaacc
atttttgagcgcctactgtgtgccattgtgagcgcctcctcacatgctttatctccaaac
ctcacagcccactga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_5|460_aa
MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL
TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA
YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE
QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK
RLVFLKEVLLDIKRHLNLAENSRYLGMAGTEGTGTASRCYIHVYRELEQAIRGADAQEDL
RWFRSTSGPGMPMNWPQFEEWNPDLPHTTTKKEKQPKKAEGVALTNATGAVESTSQAGDR
GSVSSYDRGQPYATEWSDDESGNPFGGSETNGGANPFEDDSKGVRVRALYDYDGQEQDEL
SFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_5|1383_bp
atgtccagctcctacgatgaggcctcactggcgccagaggagaccaccgacagcttctgg
gaggtggggaactacaagcggaccgtgaagcgcatcgatgacggccaccgtctatgcaac
gacctgatgaactgcgtgcaggagcgcgccaagatcgagaaggcgtacgggcagcagctc
accgactgggccaagcgttggcgccagctcatcgagaaaggcccacagtatggcagcctg
gagcgggcctggggtgccataatgacagaggcagacaaggtgagcgagctgcaccaggag
gtgaagaacaatctgctgaatgaggacctggagaaggtgaagaactggcagaaggacgcc
tatcacaagcagatcatgggtggcttcaaggagacgaaggaggctgaagatggcttccgc
aaggcccagaagccttgggccaagaagatgaaggagctggaggcagccaagaaggcctac
catttggcttgcaaagaggaaaagctggccatgacacgggagatgaacagcaagacggag
caatcggtcacacctgagcagcaaaagaagctgcaggacaaagtggacaagtgcaagcag
gatgtgcagaagacacaggagaagtatgagaaagtgctggaagatgtgggcaagaccaca
ccccagtacatggagaacatggagcaggtgtttgagcaatgccagcaatttgaggaaaag
cggctggtcttcctcaaggaggtgctgctggacatcaaacggcacctcaacctggctgag
aacagcaggtacctgggcatggcaggcaccgagggcacaggcacagccagcagatgctac
atccatgtgtaccgtgagctggagcaggccatccggggggctgatgcccaggaagacctc
agatggttccgcagcaccagtggccccggcatgcccatgaactggccccagtttgaggag
tggaacccagaccttcctcacaccaccaccaagaaggagaaacagcctaagaaggcagag
ggagtggcgctgaccaatgccactggggcggtagagtccacatcccaggctggggaccgc
ggcagtgttagcagctacgacagaggccagccctacgccaccgagtggtcagacgacgag
agtgggaacccctttgggggcagtgagaccaacgggggcgccaacccctttgaggacgac
tccaagggagtgcgcgtgcgggcactctacgactatgacggccaggagcaggacgagctc
agctttaaggccggagacgaactcaccaagctgggcgaggaggatgagcagggctggtgc
cgtgggcggctggacagcgggcagctgggcctctaccctgccaactacgtggaggctatc
tag

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_6|461_aa
MLAAPAGRARQSSLFSLTFLLSQKALEVVPVRPEGLSAQPCRGCPMTRKPPTLSQAQPTV
HRAPHPHNQLSGPHRDGEAVKPESSFISVDTAASPNSSGMGSASPGLSSVSPSHLLLPPD
TVSRTGLEKAAAGAVGLERRDWSPSPPATPEQGLSAFYLSYFDMLYPEDSSWAAKAPGAS
SREEPPEEPEQCPVIDSQAPAGSLDLVPGGLTLEEHSLEQVQSMVVGEVLKDIETACKLL
NITAGLGSDGTIRMRPSLTPPLKLLPMSTGHDPMDWSPSNVQKWLLWTEHQYRLPPMGKA
FQELAGKELCAMSEEQFRQRSPLGGDVLHAHLDIWKSAAWMKERTSPGAIHYCASTSEES
WTDSEVDSSCSGQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIR
KNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHPI

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_6|1386_bp
atgctggctgccccagctgggagggcccggcaaagcagtttattcagtttgaccttcctc
ctgtcccagaaagcgctggaagtagtgccagtgaggccagaaggcctgtctgcccaacca
tgtcgtggctgcccaatgacccggaagcccccaactctgtcccaggcccagcccactgtc
cacagggcccctcatccccataaccagcttagcggcccccacagggatggagaagcagtc
aaacctgagtcctctttcatttccgtagacacagccgccagcccaaacagcagcggcatg
ggcagcgccagcccgggtctgagcagcgtatcccccagccacctcctgctgccccccgac
acggtgtcgcggacaggcttggagaaggcggcagcgggggcagtgggtctcgagagacgg
gactggagtcccagtccacccgccacgcccgagcagggcctgtccgccttctacctctcc
tactttgacatgctgtaccctgaggacagcagctgggcagccaaggcccctggggccagc
agtcgggaggagccacctgaggagcctgagcagtgcccggtcattgacagccaagcccca
gcgggcagcctggacttggtgcccggcgggctgaccttggaggagcactcgctggagcag
gtgcagtccatggtggtgggcgaagtgctcaaggacatcgagacggcctgcaagctgctc
aacatcaccgcaggtcttggctcagatggcaccatccgcatgaggccttccctgacccct
ccattaaaattgctgcccatgagcacaggacatgatcccatggactggagccccagcaat
gtgcagaagtggctcctgtggacagagcaccaataccggctgccccccatgggcaaggcc
ttccaggagctggcgggcaaggagctgtgcgccatgtcggaggagcagttccgccagcgc
tcgcccctgggtggggatgtgctgcacgcccacctggacatctggaagtcagcggcctgg
atgaaagagcggacttcacctggggcgattcactactgtgcctcgaccagtgaggagagc
tggaccgacagcgaggtggactcatcatgctccgggcagcccatccacctgtggcagttc
ctcaaggagttgctactcaagccccacagctatggccgcttcattaggtggctcaacaag
gagaagggcatcttcaaaattgaggactcagcccaggtggcccggctgtggggcatccgc
aagaaccgtcccgccatgaactacgacaagctgagccgctccatccgccagtattacaag
aagggcatcatccggaagccagacatctcccagcgcctcgtctaccagttcgtgcacccc
atctga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_7|391_aa
MAIIKDTGYAGLMAWVWAAGRPQLIEIWQILEMSTFEGALYLAVIVTGTLVEDQLSVIPQ
RRLREDGAEEGEVTQGPEMVHSTTPNPQWSSPPGSIKKDTLRFQGLADHQPGHVFDKCHL
TPHSNTHRCLLCAYFNKSTDTDLLDEGKDNWEDHALDQVTVRGREWRQSCVTTEAAPTSP
CRLVTLKLFCPLDTAFASCQRSQDPRAQSGTQLAAAAGSMTRPASRVSLTNLPGVATGRS
YRTGGRHCTQPTSNPLTNPVVPIAQMGKLRPKLHPAGPSEQKGEVYLAEGTSLEDQHPDD
DEQNGHEDVHNQGSDVQALGGGGIRLGPSQVTNHLPVPRLHGISKCYEAQAAGVHEEGVE
QGSDDTVGHGDIHDGRYPQLLHTPPQTSPSQ

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_7|1176_bp
atggccatcataaaggacacaggctacgcggggctcatggcctgggtgtgggctgctggg
cggccccagctgatagaaatctggcaaatcttagaaatgagcaccttcgagggagccctg
tacttggctgttatcgtcactggcaccttggttgaggatcagttatcagtcattccccag
agaaggttgagggaggatggagcggaggaaggggaggtaacacaaggtcctgaaatggta
cactcgaccactcctaatccccaatggtccagccctccagggtcaataaagaaagacacg
ctgcgtttccagggccttgctgaccaccaacctggccacgtgtttgacaaatgccatctt
actcctcacagcaacactcacaggtgtttactatgtgcctatttcaacaaatcaacagat
accgacttgttggatgaaggaaaggacaactgggaggatcatgcgctggatcaagtcaca
gtcaggggaagggaatggaggcagtcctgcgtgaccacagaagctgcccccaccagcccc
tgccggctggtgacccttaaactcttctgccctcttgacacggcttttgcgtcatgtcag
agaagccaggatccccgcgcccagtctgggacgcagttggcagcagctgcaggaagcatg
acccgcccagcatctcgggtgtcactcacgaacctcccaggtgtcgctactggcaggtcc
taccgcacagggggcaggcactgtacccagcccacctccaaccccctcaccaaccctgtt
gttcccattgcacagatgggaaaactgaggcccaagctccatcctgcagggccctcggaa
cagaagggtgaggtgtatctggctgaagggacaagcttggaagatcaacacccggatgat
gatgagcagaatggtcatgaggatgtccacaatcagggctcagatgttcaggcacttggc
ggtggaggcatacgcctgggccccagtcaggtcaccaaccatcttcctgtccctagactt
cacggaataagcaaatgctatgaagcccaggcagcaggggttcacgaagagggtgttgaa
cagggatcagacgacacggtcgggcacggagatatccacgatggtcgctaccctcagctg
cttcacacaccacctcaaacatcaccttctcagtga

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_8|252_aa
MISKDDGALASTDVIWVILSVEVGGLLGVTQQLSSFETEFNTQPHRKVEGNFNPFASPQK
NRQSDENNLKDPGGSEFDSISKNTWAPAPDTWAPAPDQTEQDQNRLSQNSVNLSPSSHAN
NLSVVTYSKAGIVVGYQNLLHQVLELQWNLKCGWASRFESTSIQKATTLGKLNVPSTLSP
FPRTNHFCAHPWRRDELLAEGQNSFAPTHSLLVTADGYGVDEGMDGVQARGDTTQEPGCK
CMEEWSQSPSRA

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_8|759_bp
atgatttccaaagatgacggtgcattggcatcaactgatgtcatctgggtgattctcagt
gtggaggtgggtggacttttaggagtaacgcagcagctgtcatcttttgaaacggagttc
aacacacagccgcatcgtaaggtagaaggaaacttcaacccttttgcctctccccaaaag
aaccgacaatcagatgaaaacaacttaaaagaccctgggggctccgagttcgactcgatc
agcaaaaacacatgggctcctgctcctgacacatgggctcctgctcctgaccaaactgag
caagaccagaatagactgtcacagaactctgtaaatctgtctcccagcagtcacgcaaac
aacttatcagtagtgacttacagtaaggctgggattgtcgttggctaccagaacctgtta
caccaggtcttagaactccagtggaatctgaaatgtggatgggcctcccggtttgaaagt
acctccatccagaaggcaaccacacttggcaagttaaatgtcccaagcaccttgtctccc
ttcccaagaacaaaccatttctgtgcacatccttggaggcgagatgagctccttgcagag
ggccagaactcttttgcccccacacactccctgctggtcacagcagacggttatggagta
gatgagggaatggatggtgtccaggccaggggtgacaccacccaggaaccaggctgcaag
tgcatggaggagtggagccagagccctagtagggcctag

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_9|98_aa
MEGVEEKKVPAVPETLKKKRRNFAELKINRLRKKFAQKYTLLKGRQDVLAKRNCSKEASS
NVMKKNGTTYQTASTELHCPKELVATSHMVAIEYLGCS

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_9|297_bp
atggagggtgtcgaagagaagaaggttcctgctgtgccagaaacccttaagaaaaagcga
aggaattttgcagagctgaagatcaatcgcctgagaaagaagtttgcccaaaagtatacc
ctgctgaaaggtagacaggatgtactggctaaaagaaactgtagtaaagaagccagtagt
aatgtaatgaaaaaaaatggtacaacgtatcagacagcatccacagagctgcactgtcca
aaagagctggtggccaccagccatatggtggctattgagtacttgggatgtagctag

>gi568815592r:34438277_34644455|GENSCAN_predicted_peptide_10|33_aa
XVRPSFNNNNNNNNNNNNNSSSSSSSNNNSNVK

>gi568815592r:34438277_34644455|GENSCAN_predicted_CDS_10|102_bp
nnagtgagacccagtttcaacaacaacaacaacaacaacaacaacaacaacaacaacagc
agcagcagcagcagcagcaacaacaacagcaatgtgaaatga