Result of FASTA (ccds) for pF1KB7841
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7841, 504 aa
  1>>>pF1KB7841 504 - 504 aa - 504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4870+/-0.000986; mu= 8.4842+/- 0.060
 mean_var=117.4324+/-23.715, 0's: 0 Z-trim(108.0): 16  B-trim: 0 in 0/52
 Lambda= 0.118353
 statistics sampled from 9938 (9952) to 9938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.306), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS46788.1 UBP1 gene_id:7342|Hs108|chr3           ( 504) 3376 587.5 1.1e-167
CCDS8808.1 TFCP2 gene_id:7024|Hs108|chr12          ( 502) 2517 440.9 1.6e-123
CCDS2659.1 UBP1 gene_id:7342|Hs108|chr3            ( 540) 1867 329.9 4.4e-90
CCDS2134.1 TFCP2L1 gene_id:29842|Hs108|chr2        ( 479) 1854 327.7 1.8e-89
CCDS55827.1 TFCP2 gene_id:7024|Hs108|chr12         ( 450) 1099 198.7 1.1e-50
CCDS33144.2 GRHL1 gene_id:29841|Hs108|chr2         ( 618)  385 76.9 7.4e-14
CCDS53284.1 GRHL3 gene_id:57822|Hs108|chr1         ( 556)  351 71.0 3.8e-12
CCDS44088.1 GRHL3 gene_id:57822|Hs108|chr1         ( 602)  351 71.1   4e-12
CCDS251.1 GRHL3 gene_id:57822|Hs108|chr1           ( 607)  351 71.1 4.1e-12
CCDS252.2 GRHL3 gene_id:57822|Hs108|chr1           ( 626)  351 71.1 4.2e-12
CCDS83312.1 GRHL2 gene_id:79977|Hs108|chr8         ( 609)  343 69.7   1e-11
CCDS34931.1 GRHL2 gene_id:79977|Hs108|chr8         ( 625)  343 69.7 1.1e-11


>>CCDS46788.1 UBP1 gene_id:7342|Hs108|chr3                (504 aa)
 initn: 3376 init1: 3376 opt: 3376  Z-score: 3123.8  bits: 587.5 E(32554): 1.1e-167
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KB7 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
              430       440       450       460       470       480

              490       500    
pF1KB7 QDESCFLFSTVKAESSDGIHIILK
       ::::::::::::::::::::::::
CCDS46 QDESCFLFSTVKAESSDGIHIILK
              490       500    

>>CCDS8808.1 TFCP2 gene_id:7024|Hs108|chr12               (502 aa)
 initn: 2124 init1: 1693 opt: 2517  Z-score: 2331.1  bits: 440.9 E(32554): 1.6e-123
Smith-Waterman score: 2517; 73.3% identity (90.4% similar) in 509 aa overlap (1-504:1-502)

                  10        20        30        40        50       
pF1KB7 MAWVLKM---DEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDG
       :::.::.   :::::::::.::::::::::::::::::::::::::::::::.:::: :.
CCDS88 MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 ETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSII
       :..  :::::.:::::::::::::::::::::::::::::::::.:..:::::::::::.
CCDS88 ENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIF
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB7 RVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPA
       ::::::::::::::::::::.:::::::.::.:::::::::: :.::.:::.::::::::
CCDS88 RVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPA
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB7 KRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKP
       ::::.:::::::::::: ::::::::::::.:.::::.:::::::.::::::::::::::
CCDS88 KRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKP
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB7 KGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTS
       :::::::::::::::::: ::::::::::.:::::::::::.   .::::::::.  :.:
CCDS88 KGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE--ITYVNNSPSPG--FNS
              250       260       270       280         290        

       300       310       320       330       340       350       
pF1KB7 PQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFS
        ..:. :. ..:.: :::: .    .. ... :..: ::.:::: .::::..::::.:::
CCDS88 -SHSSFSLGEGNGS-PNHQPEPPPPVT-DNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFS
         300        310       320        330       340       350   

       360       370       380       390       400       410       
pF1KB7 GADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASS
       ::::::::..:..:::: ::::::.:.::.: ::::::::::.:. .    : :::  ..
CCDS88 GADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQ
           360       370       380       390       400       410   

       420         430       440       450       460       470     
pF1KB7 ASENG--SGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ
         :.:  .:. .:::::::::. : :...:.: .:.:   ::.:.:.:::::::.:.::.
CCDS88 KHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDE
           420       430       440       450       460       470   

         480       490       500    
pF1KB7 MVQNFQDESCFLFSTVKAESSDGIHIILK
       :.::::.:.::...:.:::..:. :::::
CCDS88 MIQNFQEEACFILDTMKAETNDSYHIILK
           480       490       500  

>>CCDS2659.1 UBP1 gene_id:7342|Hs108|chr3                 (540 aa)
 initn: 3362 init1: 1847 opt: 1867  Z-score: 1730.8  bits: 329.9 E(32554): 4.4e-90
Smith-Waterman score: 3273; 93.3% identity (93.3% similar) in 536 aa overlap (1-500:1-536)

               10        20        30        40        50        60
pF1KB7 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
              190       200       210       220       230       240

              250       260       270                              
pF1KB7 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTE---------------------------
       :::::::::::::::::::::::::::::::::                           
CCDS26 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADY
              250       260       270       280       290       300

                    280       290       300       310       320    
pF1KB7 ---------CSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 GDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
              310       320       330       340       350       360

          330       340       350       360       370       380    
pF1KB7 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
              370       380       390       400       410       420

          390       400       410       420       430       440    
pF1KB7 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
              430       440       450       460       470       480

          450       460       470       480       490       500    
pF1KB7 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS26 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
              490       500       510       520       530       540

>>CCDS2134.1 TFCP2L1 gene_id:29842|Hs108|chr2             (479 aa)
 initn: 2156 init1: 1446 opt: 1854  Z-score: 1719.6  bits: 327.7 E(32554): 1.8e-89
Smith-Waterman score: 2176; 68.1% identity (89.2% similar) in 474 aa overlap (32-504:16-476)

              10        20        30        40        50        60 
pF1KB7 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
                                     .:.: . :::::::::::. .:  ..:.. 
CCDS21                MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
                              10         20        30        40    

              70        80        90       100       110       120 
pF1KB7 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
       ::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
CCDS21 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
           50        60        70        80        90       100    

             130       140       150       160       170       180 
pF1KB7 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
       ::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
CCDS21 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
          110       120       130       140       150       160    

             190       200       210       220       230       240 
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
       ::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
CCDS21 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
          170       180       190       200       210       220    

             250       260       270       280        290       300
pF1KB7 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAY-VNNSPSPAPTFTSPQQ
       :::::::::::::::.:::::::::.::::::::::::  .:: ::..:::. .  ::  
CCDS21 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPD--VAYQVNSAPSPSYN-GSP--
          230       240       250       260         270            

              310       320       330       340       350       360
pF1KB7 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
       .. .. ..:.: :.:  . :  ...... :::.::..:::: .::::.. :::..:::::
CCDS21 NSFGLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGAD
     280       290         300       310       320       330       

              370       380       390       400       410       420
pF1KB7 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
       :::....::::::: ::::::.:..:.:.:::..:::::.:  .. :   ::.  .:.. 
CCDS21 LLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRV-PLQQKRDGSGDS
       340       350       360       370       380        390      

              430       440       450       460       470       480
pF1KB7 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
       : :    :::::.:::. . :. .:.: ...:  ..:..::::::::::..::..:::::
CCDS21 NLS----VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNF
            400       410       420       430       440       450  

              490       500       
pF1KB7 QDESCFLFSTVKAESSDGIHIILK   
       ::::::..::.::::.:: :::::   
CCDS21 QDESCFVLSTIKAESNDGYHIILKCGL
            460       470         

>>CCDS55827.1 TFCP2 gene_id:7024|Hs108|chr12              (450 aa)
 initn: 1850 init1: 1074 opt: 1099  Z-score: 1023.4  bits: 198.7 E(32554): 1.1e-50
Smith-Waterman score: 2057; 64.0% identity (80.4% similar) in 509 aa overlap (1-504:1-450)

                  10        20        30        40        50       
pF1KB7 MAWVLKM---DEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDG
       :::.::.   :::::::::.::::::::::::::::::::::::::::::::.:::: :.
CCDS55 MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 ETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSII
       :..  :::::.:::::::::::::::::::::::::::::::::.:..:::::::::::.
CCDS55 ENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIF
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB7 RVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPA
       ::::::::::::::::::::.:::::::.::.:::::::::: :.::.:::.::::::::
CCDS55 RVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPA
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB7 KRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKP
       ::::.:::                                                   :
CCDS55 KRTSVFIQ---------------------------------------------------P
                                                                   

       240       250       260       270       280       290       
pF1KB7 KGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTS
       :::::::::::::::::: ::::::::::.:::::::::::.   .::::::::.  :.:
CCDS55 KGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE--ITYVNNSPSPG--FNS
     190       200       210       220       230         240       

       300       310       320       330       340       350       
pF1KB7 PQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFS
        ..:. :. ..:.: :::: .    .. ... :..: ::.:::: .::::..::::.:::
CCDS55 -SHSSFSLGEGNGS-PNHQPEPPPPVT-DNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFS
          250        260       270        280       290       300  

       360       370       380       390       400       410       
pF1KB7 GADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASS
       ::::::::..:..:::: ::::::.:.::.: ::::::::::.:. .    : :::  ..
CCDS55 GADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQ
            310       320       330       340       350       360  

       420         430       440       450       460       470     
pF1KB7 ASENG--SGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ
         :.:  .:. .:::::::::. : :...:.: .:.:   ::.:.:.:::::::.:.::.
CCDS55 KHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDE
            370       380       390       400       410       420  

         480       490       500    
pF1KB7 MVQNFQDESCFLFSTVKAESSDGIHIILK
       :.::::.:.::...:.: :..:. :::::
CCDS55 MIQNFQEEACFILDTMK-ETNDSYHIILK
            430        440       450

>>CCDS33144.2 GRHL1 gene_id:29841|Hs108|chr2              (618 aa)
 initn: 284 init1: 106 opt: 385  Z-score: 362.3  bits: 76.9 E(32554): 7.4e-14
Smith-Waterman score: 385; 30.7% identity (56.8% similar) in 345 aa overlap (20-345:210-536)

                          10        20        30        40         
pF1KB7            MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDV-LALPIFKQ
                                     :...:   .:    ..  ::. : .: ...
CCDS33 TERVVVFDRNLNTDQFSSGAQAPNAQRRTPDSTFSETFKEGVQEVFFPSDLSLRMPGMNS
     180       190       200       210       220       230         

       50         60        70        80        90       100       
pF1KB7 EDSSLP-LDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPE
       ::  .  ..:..    :.:.. :. :   :  : :.::::.:: : : . .  .   . .
CCDS33 EDYVFDSVSGNN----FEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHH
     240       250           260       270       280       290     

       110       120       130        140            150       160 
pF1KB7 INGKLVKSIIRVVFHDRRLQYTEHQQLEGWK-WNR----PGDRLLDL-DIPMSVGIIDTR
         .: :.:.: ::: . .   ....::. :: :.       .: .:. :   : . : . 
CCDS33 PISK-VRSVIMVVFAEDK---SREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTI-SN
          300       310          320       330       340        350

             170       180       190       200       210       220 
pF1KB7 TNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEY
        .    ::. : ::   ....::.:.:.::.:. .:  : ::.:. :::::.. :. .. 
CCDS33 IEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQK--GVKGLPLNIQVDTYSYNNRSNK
              360       370       380         390       400        

             230       240       250        260       270       280
pF1KB7 TDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHE-KEKYQPSYDTTILTECSPWPDA
          .: : ::::::  :::.:: . ...:. :: . . :    ::.    .:  .:. : 
CCDS33 P--VHRAYCQIKVFCDKGAERKIRDEERKQSKRKVSDVKVPLLPSHKRMDITVFKPFIDL
        410       420       430       440       450       460      

              290       300       310       320              330   
pF1KB7 PTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQ-------IQPS--
        :  :   :.    :.. :..:  .:    .: . .:.:.    :         . ::  
CCDS33 DTQPVLFIPDV--HFANLQRGTHVLP---IASEELEGEGSVLKRGPYGTEDDFAVPPSTK
        470         480       490          500       510       520 

              340       350       360       370       380       390
pF1KB7 -ATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSV
        : :.: .. ::  :                                             
CCDS33 LARIEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKG
             530       540       550       560       570       580 

>>CCDS53284.1 GRHL3 gene_id:57822|Hs108|chr1              (556 aa)
 initn: 141 init1:  96 opt: 351  Z-score: 331.6  bits: 71.0 E(32554): 3.8e-12
Smith-Waterman score: 353; 24.9% identity (54.4% similar) in 458 aa overlap (54-504:175-554)

            30        40        50        60        70        80   
pF1KB7 SGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETL
                                     : :  . .  :.:.. .  .  .:  .  .
CCDS53 RWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPM
          150       160       170       180       190       200    

            90       100       110       120       130        140  
pF1KB7 TYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWK-WN--
       .:::.:: : .  : .   :    .... :::.. ::: ....     .::. :: :.  
CCDS53 AYLNKGQFYPVT-LRTPAGGKGLALSSNKVKSVVMVVFDNEKVPV---EQLRFWKHWHSR
          210        220       230       240          250       260

                 150       160       170       180       190       
pF1KB7 RPG--DRLLDL-DIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRK
       .:   .:..:. :   . . .. . .    ::. :.:.  .....:: :.:.::.:. .:
CCDS53 QPTAKQRVIDVADCKENFNTVE-HIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQK
              270       280        290       300       310         

       200       210       220        230       240       250      
pF1KB7 HGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASCQIKVFKPKGADRKQKTDREKMEKRTA
         : ::::. .:.::.   . :  :..: : : ::::.:  :::.::.. :..:. .: .
CCDS53 --GVKGVPLNLQIDTY---DCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKV
       320       330          340       350       360       370    

        260       270       280       290       300       310      
pF1KB7 HEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQ
       .  .. . .    .:   : .    :.:.     :   . .:   .  .:. . :: ...
CCDS53 KCPDSSNSGVKGCLL---SGFRGNETTYLR----PETDLETPP--VLFIPNVHFSSLQRS
          380          390       400           410         420     

        320       330       340       350       360       370      
pF1KB7 GDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAA
       : ::. ..:    ::..    ..  ::   : .:. :  . .    : .::  .:     
CCDS53 G-GAAPSAG----PSSS----NRLPLKRTCSPFTEEFEPLPS----KQAKEGDLQ-----
          430               440       450           460            

        380       390       400       410       420       430      
pF1KB7 DGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEE
                       :. .:: ::                 .:.      :. :..:. 
CCDS53 ----------------RVLLYVRRE-----------------TEE------VFDALMLKT
                       470                              480        

        440       450       460       470       480       490      
pF1KB7 MIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESS
          . .   ..  ...: ..: .::..   :: . ......:.....  ::..   .: .
CCDS53 PDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNHVAFLLDM--GELD
      490       500       510       520       530       540        

        500      
pF1KB7 DGIHIILK  
         :.::::  
CCDS53 GKIQIILKEL
        550      

>>CCDS44088.1 GRHL3 gene_id:57822|Hs108|chr1              (602 aa)
 initn: 141 init1:  96 opt: 351  Z-score: 331.1  bits: 71.1 E(32554): 4e-12
Smith-Waterman score: 353; 24.9% identity (54.4% similar) in 458 aa overlap (54-504:221-600)

            30        40        50        60        70        80   
pF1KB7 SGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETL
                                     : :  . .  :.:.. .  .  .:  .  .
CCDS44 RWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPM
              200       210       220       230       240       250

            90       100       110       120       130        140  
pF1KB7 TYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWK-WN--
       .:::.:: : .  : .   :    .... :::.. ::: ....     .::. :: :.  
CCDS44 AYLNKGQFYPVT-LRTPAGGKGLALSSNKVKSVVMVVFDNEKVPV---EQLRFWKHWHSR
              260        270       280       290          300      

                 150       160       170       180       190       
pF1KB7 RPG--DRLLDL-DIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRK
       .:   .:..:. :   . . .. . .    ::. :.:.  .....:: :.:.::.:. .:
CCDS44 QPTAKQRVIDVADCKENFNTVE-HIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQK
        310       320        330       340       350       360     

       200       210       220        230       240       250      
pF1KB7 HGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASCQIKVFKPKGADRKQKTDREKMEKRTA
         : ::::. .:.::.   . :  :..: : : ::::.:  :::.::.. :..:. .: .
CCDS44 --GVKGVPLNLQIDTY---DCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKV
           370          380       390       400       410       420

        260       270       280       290       300       310      
pF1KB7 HEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQ
       .  .. . .    .:   : .    :.:.     :   . .:   .  .:. . :: ...
CCDS44 KCPDSSNSGVKGCLL---SGFRGNETTYLR----PETDLETPP--VLFIPNVHFSSLQRS
              430          440           450         460       470 

        320       330       340       350       360       370      
pF1KB7 GDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAA
       : ::. ..:    ::..    ..  ::   : .:. :  . .    : .::  .:     
CCDS44 G-GAAPSAG----PSSS----NRLPLKRTCSPFTEEFEPLPS----KQAKEGDLQ-----
                  480           490       500           510        

        380       390       400       410       420       430      
pF1KB7 DGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEE
                       :. .:: ::                 .:.      :. :..:. 
CCDS44 ----------------RVLLYVRRE-----------------TEE------VFDALMLKT
                           520                              530    

        440       450       460       470       480       490      
pF1KB7 MIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESS
          . .   ..  ...: ..: .::..   :: . ......:.....  ::..   .: .
CCDS44 PDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNHVAFLLDM--GELD
          540       550       560       570       580         590  

        500      
pF1KB7 DGIHIILK  
         :.::::  
CCDS44 GKIQIILKEL
            600  

>>CCDS251.1 GRHL3 gene_id:57822|Hs108|chr1                (607 aa)
 initn: 141 init1:  96 opt: 351  Z-score: 331.0  bits: 71.1 E(32554): 4.1e-12
Smith-Waterman score: 353; 24.9% identity (54.4% similar) in 458 aa overlap (54-504:226-605)

            30        40        50        60        70        80   
pF1KB7 SGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETL
                                     : :  . .  :.:.. .  .  .:  .  .
CCDS25 RWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPM
         200       210       220       230       240       250     

            90       100       110       120       130        140  
pF1KB7 TYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWK-WN--
       .:::.:: : .  : .   :    .... :::.. ::: ....     .::. :: :.  
CCDS25 AYLNKGQFYPVT-LRTPAGGKGLALSSNKVKSVVMVVFDNEKVPV---EQLRFWKHWHSR
         260        270       280       290          300       310 

                 150       160       170       180       190       
pF1KB7 RPG--DRLLDL-DIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRK
       .:   .:..:. :   . . .. . .    ::. :.:.  .....:: :.:.::.:. .:
CCDS25 QPTAKQRVIDVADCKENFNTVE-HIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQK
             320       330        340       350       360       370

       200       210       220        230       240       250      
pF1KB7 HGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASCQIKVFKPKGADRKQKTDREKMEKRTA
         : ::::. .:.::.   . :  :..: : : ::::.:  :::.::.. :..:. .: .
CCDS25 --GVKGVPLNLQIDTY---DCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKV
                380          390       400       410       420     

        260       270       280       290       300       310      
pF1KB7 HEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQ
       .  .. . .    .:   : .    :.:.     :   . .:   .  .:. . :: ...
CCDS25 KCPDSSNSGVKGCLL---SGFRGNETTYLR----PETDLETPP--VLFIPNVHFSSLQRS
         430       440          450           460         470      

        320       330       340       350       360       370      
pF1KB7 GDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAA
       : ::. ..:    ::..    ..  ::   : .:. :  . .    : .::  .:     
CCDS25 G-GAAPSAG----PSSS----NRLPLKRTCSPFTEEFEPLPS----KQAKEGDLQ-----
         480               490       500           510             

        380       390       400       410       420       430      
pF1KB7 DGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEE
                       :. .:: ::                 .:.      :. :..:. 
CCDS25 ----------------RVLLYVRRE-----------------TEE------VFDALMLKT
                      520                        530               

        440       450       460       470       480       490      
pF1KB7 MIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESS
          . .   ..  ...: ..: .::..   :: . ......:.....  ::..   .: .
CCDS25 PDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNHVAFLLDM--GELD
     540       550       560       570       580       590         

        500      
pF1KB7 DGIHIILK  
         :.::::  
CCDS25 GKIQIILKEL
       600       

>>CCDS252.2 GRHL3 gene_id:57822|Hs108|chr1                (626 aa)
 initn: 141 init1:  96 opt: 351  Z-score: 330.8  bits: 71.1 E(32554): 4.2e-12
Smith-Waterman score: 351; 28.5% identity (59.9% similar) in 274 aa overlap (54-314:221-484)

            30        40        50        60        70        80   
pF1KB7 SGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETL
                                     : :  . .  :.:.. .  .  .:  .  .
CCDS25 RWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPM
              200       210       220       230       240       250

            90       100       110       120       130        140  
pF1KB7 TYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWK-WN--
       .:::.:: : .  : .   :    .... :::.. ::: ....     .::. :: :.  
CCDS25 AYLNKGQFYPVT-LRTPAGGKGLALSSNKVKSVVMVVFDNEKVPV---EQLRFWKHWHSR
              260        270       280       290          300      

                 150       160       170       180       190       
pF1KB7 RPG--DRLLDL-DIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRK
       .:   .:..:. :   . . .. . .    ::. :.:.  .....:: :.:.::.:. .:
CCDS25 QPTAKQRVIDVADCKENFNTVE-HIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQK
        310       320        330       340       350       360     

       200       210       220        230       240       250      
pF1KB7 HGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASCQIKVFKPKGADRKQKTDREKMEKRTA
         : ::::. .:.::.   . :  :..: : : ::::.:  :::.::.. :..:. .: .
CCDS25 --GVKGVPLNLQIDTY---DCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKV
           370          380       390       400       410       420

        260       270       280          290          300       310
pF1KB7 HEKEKYQPSYDTTILTECSPWPDA---PTAYVNNSPS---PAPTFTSPQQSTCSVPDSNS
       .  .. . .    .:.       .   : . ... :    :   :.: :.:  ..:... 
CCDS25 KCPDSSNSGVKGCLLSGFRGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAGP
              430       440       450       460       470       480

              320       330       340       350       360       370
pF1KB7 SSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLV
       :: :                                                        
CCDS25 SSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLKTPDLKGL
              490       500       510       520       530       540




504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:52:06 2016 done: Sat Nov  5 09:52:07 2016
 Total Scan time:  2.800 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com