Result of FASTA (ccds) for pF1KB9574
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9574, 380 aa
  1>>>pF1KB9574 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4890+/-0.000843; mu= 8.4443+/- 0.051
 mean_var=150.2520+/-30.492, 0's: 0 Z-trim(112.8): 47  B-trim: 543 in 1/52
 Lambda= 0.104632
 statistics sampled from 13504 (13545) to 13504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.416), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS9841.1 FOS gene_id:2353|Hs108|chr14            ( 380) 2507 389.7 2.3e-108
CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2           ( 326)  630 106.3   4e-23
CCDS12664.1 FOSB gene_id:2354|Hs108|chr19          ( 338)  484 84.3 1.8e-16
CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11          ( 271)  468 81.8   8e-16


>>CCDS9841.1 FOS gene_id:2353|Hs108|chr14                 (380 aa)
 initn: 2507 init1: 2507 opt: 2507  Z-score: 2058.9  bits: 389.7 E(32554): 2.3e-108
Smith-Waterman score: 2507; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KB9 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 IPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSVASLDLTGGLPEVATPESEEAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSVASLDLTGGLPEVATPESEEAFT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LPLLNDPEPKPSVEPVKSISSMELKTEPFDDFLFPASSRPSGSETARSVPDMDLSGSFYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LPLLNDPEPKPSVEPVKSISSMELKTEPFDDFLFPASSRPSGSETARSVPDMDLSGSFYA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCTAYTSSFVFTYPEADSFPSCAAAHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCTAYTSSFVFTYPEADSFPSCAAAHRK
              310       320       330       340       350       360

              370       380
pF1KB9 GSSSNEPSSDSLSSPTLLAL
       ::::::::::::::::::::
CCDS98 GSSSNEPSSDSLSSPTLLAL
              370       380

>>CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2                (326 aa)
 initn: 703 init1: 560 opt: 630  Z-score: 528.6  bits: 106.3 E(32554): 4e-23
Smith-Waterman score: 817; 43.4% identity (65.4% similar) in 396 aa overlap (2-380:1-326)

               10        20        30        40        50        60
pF1KB9 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
        :.. . .... .::: ::.:::       :  :.:.:: :.  . : : .:.  :.. :
CCDS17  MYQDYPGNFD-TSSRGSSGSPA-------H--AESYSSGGG--GQQKFRVDMPGSGSAF
                10         20                 30          40       

               70        80        90        100           110     
pF1KB9 IPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFG-VPA----PSAGAYSRAGVVKTM
       :::..::.:: ::::.:::....:..    :. ::.. .:.    :.  :  : ::.::.
CCDS17 IPTINAITTSQDLQWMVQPTVITSMSNPYPRS-HPYSPLPGLASVPGHMALPRPGVIKTI
        50        60        70         80        90       100      

         120       130       140       150       160       170     
pF1KB9 TGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDE
           . ..::: . :::::::::::::::::::.:::::::::::::. :::::..::.:
CCDS17 ----GTTVGRRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEE
            110       120       130       140       150       160  

         180       190       200       210       220       230     
pF1KB9 KSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSVASLDLTGGLPEVATPES
       ::.:: :::.: ::::::::.:.:: :.:::      :::                .:  
CCDS17 KSGLQKEIAELQKEKEKLEFMLVAHGPVCKIS-----PEERR--------------SP--
            170       180       190                          200   

         240       250           260       270       280        290
pF1KB9 EEAFTLPLLNDPEPKPSVEPVKS----ISSMELKTEPFDDFLFPASSRPSGSETARSV-P
                    : :...:..:    .... .: ::...   :.::  . ... :::  
CCDS17 -------------PAPGLQPMRSGGGSVGAVVVKQEPLEE-DSPSSSSAGLDKAQRSVIK
                          210       220        230       240       

              300       310       320       330       340          
pF1KB9 DMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCTAYTSSFVFTYP----
        ....:.::.   ::::.      :.          ::: ::. :  ::..:::::    
CCDS17 PISIAGGFYGE--EPLHT------PI----------VVTSTPAVTPGTSNLVFTYPSVLE
       250         260                       270       280         

         350         360       370       380
pF1KB9 -EADSFPS--CAAAHRKGSSSNEPSSDSLSSPTLLAL
        :. . ::  :. :::..:::.. :::::.:::::::
CCDS17 QESPASPSESCSKAHRRSSSSGDQSSDSLNSPTLLAL
     290       300       310       320      

>>CCDS12664.1 FOSB gene_id:2354|Hs108|chr19               (338 aa)
 initn: 711 init1: 440 opt: 484  Z-score: 409.2  bits: 84.3 E(32554): 1.8e-16
Smith-Waterman score: 762; 42.8% identity (64.4% similar) in 404 aa overlap (2-380:1-338)

               10        20        30        40        50        60
pF1KB9 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
        ::..: .::. :.::::: ::...  : : : .:::.:  . . .:. :. :.   ..:
CCDS12  MFQAFPGDYD-SGSRCSS-SPSAE--SQYLSSVDSFGSPPTAAASQE-CAGLGEMPGSF
                10          20          30        40         50    

               70        80             90         100             
pF1KB9 IPTVTAISTSPDLQWLVQPALVSSVAPSQ-----TRAP--HPFGVPA-----PSAGAYSR
       .::::::.:: ::::::::.:.::.: ::     .. :   :. .:.     :. ..:: 
CCDS12 VPTVTAITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTSYSTPGMSGYSS
           60        70        80        90       100       110    

      110          120                130       140       150      
pF1KB9 AGVVKT---MTGGRAQSIG---------RRGKVEQLSPEEEEKRRIRRERNKMAAAKCRN
       .:.  .    :.: ... :         :: . : :.::::::::.::::::.:::::::
CCDS12 GGASGSGGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRN
          120       130       140       150       160       170    

        160       170       180       190       200       210      
pF1KB9 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEM
       ::::::: :::::::::.::. :..:::.: ::::.:::.:.::.:.:::: . : :   
CCDS12 RRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEG-PGPG
          180       190       200       210       220        230   

        220        230       240       250       260       270     
pF1KB9 SVASL-DLTGGLPEVATPESEEAFTLPLLNDPEPKPSVEPVKSISSMELKTEPFDDFLFP
        .: . :: :     ..: .:..:.  ::  : : :                ::      
CCDS12 PLAEVRDLPG-----SAPAKEDGFSW-LLPPPPPPPL---------------PF------
           240            250        260                           

         280       290       300       310       320       330     
pF1KB9 ASSRPSGSETARSVPDMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCT
               .:....:  .:..:...      ::    .:      .:.  :::.  ::  
CCDS12 --------QTSQDAPP-NLTASLFT------HSEVQVLG------DPF--PVVN--PS--
                270        280             290                     

         340       350       360       370       380
pF1KB9 AYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL
        ::::::.: ::...:   :.:.:  :.:..:: : :.::.::::
CCDS12 -YTSSFVLTCPEVSAF---AGAQRT-SGSDQPS-DPLNSPSLLAL
      300       310          320         330        

>>CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11               (271 aa)
 initn: 677 init1: 422 opt: 468  Z-score: 397.5  bits: 81.8 E(32554): 8e-16
Smith-Waterman score: 603; 41.7% identity (57.7% similar) in 324 aa overlap (59-380:36-271)

       30        40        50        60        70        80        
pF1KB9 YYHSPADSFSSMGSPVNAQDFCTDLAVSSANFIPTVTAISTSPDLQWLVQPALVSSVAPS
                                     ...:.....: : .:::.::: ...   ::
CCDS81 GEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG---PS
          10        20        30        40        50        60     

       90       100       110       120       130       140        
pF1KB9 QTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNK
       .   :.:.  :  :     : ::....  :   .. ::   ::.::::::.::.::::::
CCDS81 SY--PRPLTYPQYSP-PQPRPGVIRAL--GPPPGV-RRRPCEQISPEEEERRRVRRERNK
               70         80          90        100       110      

      150       160       170       180       190       200        
pF1KB9 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPD
       .:::::::::.:::: ::::::.::::::.:: :: .: :.::.::..: :::: ::::.
CCDS81 LAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPE
        120       130       140       150       160       170      

      210       220       230       240       250       260        
pF1KB9 DLGFPEEMSVASLDLTGGLPEVATPESEEAFTLPLLNDPEPKPSVEPVKSISSMELKTEP
                 :.   ::.   ...:                                   
CCDS81 G---------AKEGDTGSTSGTSSP-----------------------------------
                 180       190                                     

      270       280       290       300       310       320        
pF1KB9 FDDFLFPASSRPSGSETARSVPDMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVV
             ::  ::        :: ..::         :        ::.  : : : ::..
CCDS81 ------PAPCRP--------VPCISLS---------P--------GPV-LEPEALHTPTL
                          200                         210       220

      330       340       350        360        370       380
pF1KB9 TCTPSCTAYTSSFVFTYPEADSFPS-CAAAHRKGSSSN-EPSSDSLSSPTLLAL
         ::: : .: :.:::::   : :  ::.::::.:::. .:::: :.:::::::
CCDS81 MTTPSLTPFTPSLVFTYP---STPEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
              230          240       250       260       270 




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:15:31 2016 done: Fri Nov  4 00:15:32 2016
 Total Scan time:  2.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com