Result of FASTA (omim) for pF1KB9502
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9502, 1173 aa
  1>>>pF1KB9502 1173 - 1173 aa - 1173 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0999+/-0.000401; mu= 4.9381+/- 0.025
 mean_var=202.5884+/-41.127, 0's: 0 Z-trim(118.5): 18  B-trim: 71 in 2/49
 Lambda= 0.090109
 statistics sampled from 31600 (31616) to 31600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.371), width:  16
 Scan time: 17.920

The best scores are:                                      opt bits E(85289)
NP_060591 (OMIM: 610348) SMC5-SMC6 complex localiz (1173) 7749 1021.0       0
XP_005270022 (OMIM: 610348) PREDICTED: SMC5-SMC6 c (1172) 7732 1018.8       0
NP_001129595 (OMIM: 610348) SMC5-SMC6 complex loca (1186) 7660 1009.5       0
XP_011538246 (OMIM: 610348) PREDICTED: SMC5-SMC6 c (1109) 7286 960.8       0
NP_001230699 (OMIM: 610348) SMC5-SMC6 complex loca (  63)  347 58.0 2.2e-08


>>NP_060591 (OMIM: 610348) SMC5-SMC6 complex localizatio  (1173 aa)
 initn: 7749 init1: 7749 opt: 7749  Z-score: 5453.3  bits: 1021.0 E(85289):    0
Smith-Waterman score: 7749; 99.9% identity (99.9% similar) in 1173 aa overlap (1-1173:1-1173)

               10        20        30        40        50        60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170   
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
       :::::::::::::::::::::::::::::::::
NP_060 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
             1150      1160      1170   

>>XP_005270022 (OMIM: 610348) PREDICTED: SMC5-SMC6 compl  (1172 aa)
 initn: 5592 init1: 5592 opt: 7732  Z-score: 5441.4  bits: 1018.8 E(85289):    0
Smith-Waterman score: 7732; 99.8% identity (99.8% similar) in 1173 aa overlap (1-1173:1-1172)

               10        20        30        40        50        60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_005 NLSNVENGHLSRKRSSSDSWEPTS-GSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
              310       320        330       340       350         

              370       380       390       400       410       420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
     720       730       740       750       760       770         

              790       800       810       820       830       840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
     780       790       800       810       820       830         

              850       860       870       880       890       900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
     840       850       860       870       880       890         

              910       920       930       940       950       960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
     900       910       920       930       940       950         

              970       980       990      1000      1010      1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
     960       970       980       990      1000      1010         

             1030      1040      1050      1060      1070      1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
    1020      1030      1040      1050      1060      1070         

             1090      1100      1110      1120      1130      1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
    1080      1090      1100      1110      1120      1130         

             1150      1160      1170   
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
       :::::::::::::::::::::::::::::::::
XP_005 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
    1140      1150      1160      1170  

>>NP_001129595 (OMIM: 610348) SMC5-SMC6 complex localiza  (1186 aa)
 initn: 7660 init1: 7660 opt: 7660  Z-score: 5390.7  bits: 1009.5 E(85289):    0
Smith-Waterman score: 7660; 99.9% identity (99.9% similar) in 1162 aa overlap (1-1162:1-1162)

               10        20        30        40        50        60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170                
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS             
       ::::::::::::::::::::::                        
NP_001 KDLVARIHGKWQEIIQNCRPTQVSFCYTISCILNSFAEWHSSYCLK
             1150      1160      1170      1180      

>>XP_011538246 (OMIM: 610348) PREDICTED: SMC5-SMC6 compl  (1109 aa)
 initn: 7286 init1: 7286 opt: 7286  Z-score: 5128.4  bits: 960.8 E(85289):    0
Smith-Waterman score: 7286; 99.9% identity (99.9% similar) in 1109 aa overlap (65-1173:1-1109)

           40        50        60        70        80        90    
pF1KB9 AAAGKRTESPGDRKQSIIDFFKPASKQDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLS
                                     ::::::::::::::::::::::::::::::
XP_011                               MLDSPQKSNIKYGGSRLSITGTEQFERKLS
                                             10        20        30

          100       110       120       130       140       150    
pF1KB9 SPKESKPKRVPPEKSPIIEAFMKGVKEHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPKESKPKRVPPEKSPIIEAFMKGVKEHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSS
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB9 YHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSR
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KB9 SLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQMEQRINSENSFSEASSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQMEQRINSENSFSEASSLS
              160       170       180       190       200       210

          280       290       300       310       320       330    
pF1KB9 LKSSIERKYKPRQEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKSSIERKYKPRQEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPE
              220       230       240       250       260       270

          340       350       360       370       380       390    
pF1KB9 KRKRNSVDSDLKSTRESMIPKARESFLEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRKRNSVDSDLKSTRESMIPKARESFLEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISK
              280       290       300       310       320       330

          400       410       420       430       440       450    
pF1KB9 EPSDETDGSSAGLAPSNSGNSGHHSTRNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPSDETDGSSAGLAPSNSGNSGHHSTRNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKAS
              340       350       360       370       380       390

          460       470       480       490       500       510    
pF1KB9 NLQKNKTASSTTKEKETKLPLLSRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLQKNKTASSTTKEKETKLPLLSRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGH
              400       410       420       430       440       450

          520       530       540       550       560       570    
pF1KB9 STESTKHKEHKAKTNKADSNVSSGKIYGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSD
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 STESTKHKEHKAKTNKADSNVSSGKISGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSD
              460       470       480       490       500       510

          580       590       600       610       620       630    
pF1KB9 KAPSEGESSGNSNAGSSALKRKLRGDFDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAPSEGESSGNSNAGSSALKRKLRGDFDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQ
              520       530       540       550       560       570

          640       650       660       670       680       690    
pF1KB9 TPAATGKPPALSKGLRSQSSDYTGHVHPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPAATGKPPALSKGLRSQSSDYTGHVHPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIR
              580       590       600       610       620       630

          700       710       720       730       740       750    
pF1KB9 QGRGIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGRGIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIF
              640       650       660       670       680       690

          760       770       780       790       800       810    
pF1KB9 NQYTLDLRDSGFIGQSAVEKLILKSGKTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQYTLDLRDSGFIGQSAVEKLILKSGKTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMM
              700       710       720       730       740       750

          820       830       840       850       860       870    
pF1KB9 SVHTDCIVSVQILSTLMEITIRNDTFSDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVHTDCIVSVQILSTLMEITIRNDTFSDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLEN
              760       770       780       790       800       810

          880       890       900       910       920       930    
pF1KB9 LQPDFNEDYLVSETQTTSRGKESEDSSYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQPDFNEDYLVSETQTTSRGKESEDSSYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQD
              820       830       840       850       860       870

          940       950       960       970       980       990    
pF1KB9 REIMLLILMLFKMSLEKQLKQIPLVDFQSLLINLMKNIRDWNTKVPELCLGINELSSHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REIMLLILMLFKMSLEKQLKQIPLVDFQSLLINLMKNIRDWNTKVPELCLGINELSSHPH
              880       890       900       910       920       930

         1000      1010      1020      1030      1040      1050    
pF1KB9 NLLWLVQLVPNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLLWLVQLVPNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPS
              940       950       960       970       980       990

         1060      1070      1080      1090      1100      1110    
pF1KB9 DLLKKMVLKKKAEQPDGIIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLLKKMVLKKKAEQPDGIIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFV
             1000      1010      1020      1030      1040      1050

         1120      1130      1140      1150      1160      1170   
pF1KB9 LLCGALEKHVKCDIREDARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLCGALEKHVKCDIREDARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
             1060      1070      1080      1090      1100         

>>NP_001230699 (OMIM: 610348) SMC5-SMC6 complex localiza  (63 aa)
 initn: 369 init1: 347 opt: 347  Z-score: 271.6  bits: 58.0 E(85289): 2.2e-08
Smith-Waterman score: 347; 100.0% identity (100.0% similar) in 47 aa overlap (1-47:1-47)

               10        20        30        40        50        60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
       :::::::::::::::::::::::::::::::::::::::::::::::             
NP_001 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRYRAEGLRRGRVAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
                                                                   
NP_001 ARV                                                         
                                                                   




1173 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:03:16 2016 done: Fri Nov  4 00:03:18 2016
 Total Scan time: 17.920 Total Display time:  0.180

Function used was FASTA [36.3.4 Apr, 2011]
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