Result of FASTA (omim) for pF1KB9449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9449, 465 aa
  1>>>pF1KB9449 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9116+/-0.000292; mu= 11.3001+/- 0.018
 mean_var=120.0284+/-24.935, 0's: 0 Z-trim(121.3): 59  B-trim: 4035 in 2/52
 Lambda= 0.117066
 statistics sampled from 37597 (37673) to 37597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.442), width:  16
 Scan time: 10.520

The best scores are:                                      opt bits E(85289)
NP_002492 (OMIM: 164005,602535,614753) nuclear fac ( 441) 3003 517.8 2.3e-146
XP_005259976 (OMIM: 164005,602535,614753) PREDICTE ( 500) 2939 507.0 4.6e-143
NP_001257973 (OMIM: 164005,602535,614753) nuclear  ( 433) 2935 506.3 6.5e-143
XP_005259975 (OMIM: 164005,602535,614753) PREDICTE ( 502) 2848 491.7 1.9e-138
XP_005259977 (OMIM: 164005,602535,614753) PREDICTE ( 494) 2780 480.2 5.5e-135
NP_001257972 (OMIM: 164005,602535,614753) nuclear  ( 510) 2780 480.2 5.6e-135
XP_011526342 (OMIM: 164005,602535,614753) PREDICTE ( 518) 2780 480.2 5.7e-135
XP_016882326 (OMIM: 164005,602535,614753) PREDICTE ( 400) 2208 383.5 5.6e-106
XP_006722823 (OMIM: 164005,602535,614753) PREDICTE ( 459) 2144 372.8 1.1e-102
XP_005259974 (OMIM: 164005,602535,614753) PREDICTE ( 520) 2144 372.8 1.2e-102
NP_001138984 (OMIM: 600727) nuclear factor 1 A-typ ( 554) 2083 362.5 1.6e-99
NP_005586 (OMIM: 600727) nuclear factor 1 A-type i ( 498) 2043 355.7 1.6e-97
NP_001128145 (OMIM: 600727) nuclear factor 1 A-typ ( 509) 2043 355.7 1.7e-97
XP_016856851 (OMIM: 600727) PREDICTED: nuclear fac ( 490) 1984 345.7 1.6e-94
NP_001138983 (OMIM: 600727) nuclear factor 1 A-typ ( 501) 1984 345.8 1.6e-94
XP_011539817 (OMIM: 600727) PREDICTED: nuclear fac ( 516) 1824 318.7 2.3e-86
XP_011539814 (OMIM: 600727) PREDICTED: nuclear fac ( 527) 1824 318.7 2.3e-86
XP_011539816 (OMIM: 600727) PREDICTED: nuclear fac ( 519) 1765 308.8 2.3e-83
XP_016882324 (OMIM: 600729) PREDICTED: nuclear fac ( 439) 1634 286.6 9.2e-77
NP_001231933 (OMIM: 600729) nuclear factor 1 C-typ ( 439) 1634 286.6 9.2e-77
NP_005588 (OMIM: 600729) nuclear factor 1 C-type i ( 428) 1616 283.6 7.4e-76
NP_001231931 (OMIM: 600729) nuclear factor 1 C-typ ( 508) 1617 283.8 7.6e-76
XP_005259621 (OMIM: 600729) PREDICTED: nuclear fac ( 511) 1617 283.8 7.6e-76
XP_016882323 (OMIM: 600729) PREDICTED: nuclear fac ( 565) 1617 283.8 8.2e-76
XP_006716836 (OMIM: 600728) PREDICTED: nuclear fac ( 569) 1612 283.0 1.5e-75
NP_001177666 (OMIM: 600728) nuclear factor 1 B-typ ( 494) 1610 282.6 1.7e-75
XP_006716838 (OMIM: 600728) PREDICTED: nuclear fac ( 498) 1610 282.6 1.7e-75
XP_006716837 (OMIM: 600728) PREDICTED: nuclear fac ( 503) 1610 282.6 1.7e-75
XP_005251526 (OMIM: 600728) PREDICTED: nuclear fac ( 561) 1610 282.6 1.9e-75
XP_005251524 (OMIM: 600728) PREDICTED: nuclear fac ( 570) 1610 282.6 1.9e-75
XP_016870228 (OMIM: 600728) PREDICTED: nuclear fac ( 419) 1601 281.0 4.2e-75
NP_005587 (OMIM: 600728) nuclear factor 1 B-type i ( 420) 1599 280.7 5.3e-75
XP_005251527 (OMIM: 600728) PREDICTED: nuclear fac ( 487) 1599 280.7   6e-75
NP_001231934 (OMIM: 600729) nuclear factor 1 C-typ ( 430) 1587 278.7 2.2e-74
XP_016882325 (OMIM: 600729) PREDICTED: nuclear fac ( 419) 1569 275.6 1.8e-73
NP_995315 (OMIM: 600729) nuclear factor 1 C-type i ( 499) 1570 275.8 1.8e-73
XP_006722822 (OMIM: 600729) PREDICTED: nuclear fac ( 556) 1570 275.9   2e-73
NP_001177667 (OMIM: 600728) nuclear factor 1 B-typ ( 446) 1564 274.8 3.4e-73
XP_005251525 (OMIM: 600728) PREDICTED: nuclear fac ( 566) 1551 272.7 1.9e-72
XP_016870230 (OMIM: 600728) PREDICTED: nuclear fac ( 415) 1542 271.1 4.2e-72
XP_016870229 (OMIM: 600728) PREDICTED: nuclear fac ( 416) 1540 270.7 5.3e-72
XP_016870231 (OMIM: 600728) PREDICTED: nuclear fac ( 308)  465 89.1 1.9e-17
NP_001269716 (OMIM: 600728) nuclear factor 1 B-typ ( 309)  296 60.5 7.3e-09
XP_005251528 (OMIM: 600728) PREDICTED: nuclear fac ( 318)  296 60.5 7.5e-09
XP_016856852 (OMIM: 600727) PREDICTED: nuclear fac ( 271)  253 53.2   1e-06


>>NP_002492 (OMIM: 164005,602535,614753) nuclear factor   (441 aa)
 initn: 2700 init1: 2700 opt: 3003  Z-score: 2748.7  bits: 517.8 E(85289): 2.3e-146
Smith-Waterman score: 3003; 99.8% identity (99.8% similar) in 441 aa overlap (26-465:1-441)

               10        20        30        40        50        60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                :::::::::::::::::::::::::::::::::::
NP_002                          MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
         280       290       300       310       320       330     

              370       380       390       400       410          
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_002 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
         340       350       360       370       380       390     

     420       430       440       450       460     
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
         400       410       420       430       440 

>>XP_005259976 (OMIM: 164005,602535,614753) PREDICTED: n  (500 aa)
 initn: 2633 init1: 2633 opt: 2939  Z-score: 2689.5  bits: 507.0 E(85289): 4.6e-143
Smith-Waterman score: 2939; 97.5% identity (98.0% similar) in 445 aa overlap (22-465:57-500)

                        10        20        30        40        50 
pF1KB9          MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
                                     ::   .  :   .:::::::::::::::::
XP_005 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
         30        40        50        60         70        80     

              60        70        80        90       100       110 
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
          90       100       110       120       130       140     

             120       130       140       150       160       170 
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
         150       160       170       180       190       200     

             180       190       200       210       220       230 
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
         210       220       230       240       250       260     

             240       250       260       270       280       290 
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
         270       280       290       300       310       320     

             300       310       320       330       340       350 
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
         330       340       350       360       370       380     

             360       370       380       390       400       410 
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
         390       400       410       420       430       440     

              420       430       440       450       460     
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
         450       460       470       480       490       500

>>NP_001257973 (OMIM: 164005,602535,614753) nuclear fact  (433 aa)
 initn: 2632 init1: 2632 opt: 2935  Z-score: 2686.7  bits: 506.3 E(85289): 6.5e-143
Smith-Waterman score: 2935; 99.8% identity (99.8% similar) in 432 aa overlap (35-465:2-433)

           10        20        30        40        50        60    
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                     ::::::::::::::::::::::::::::::
NP_001                              MDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                            10        20        30 

           70        80        90       100       110       120    
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
              40        50        60        70        80        90 

          130       140       150       160       170       180    
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
             100       110       120       130       140       150 

          190       200       210       220       230       240    
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
             160       170       180       190       200       210 

          250       260       270       280       290       300    
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
             220       230       240       250       260       270 

          310       320       330       340       350       360    
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
             280       290       300       310       320       330 

          370       380       390       400       410        420   
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
             340       350       360       370       380       390 

           430       440       450       460     
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
             400       410       420       430   

>>XP_005259975 (OMIM: 164005,602535,614753) PREDICTED: n  (502 aa)
 initn: 2727 init1: 2700 opt: 2848  Z-score: 2606.4  bits: 491.7 E(85289): 1.9e-138
Smith-Waterman score: 2848; 96.1% identity (97.0% similar) in 436 aa overlap (26-460:1-436)

               10        20        30        40        50        60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                :::::::::::::::::::::::::::::::::::
XP_005                          MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
         280       290       300       310       320       330     

              370       380       390       400       410          
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_005 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
         340       350       360       370       380       390     

     420       430       440       450       460                   
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF              
       ::::::::::::::::::::::: .      .: ..    :                   
XP_005 GQDSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTST
         400       410       420       430       440       450     

XP_005 APDGAALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
         460       470       480       490       500  

>>XP_005259977 (OMIM: 164005,602535,614753) PREDICTED: n  (494 aa)
 initn: 2659 init1: 2632 opt: 2780  Z-score: 2544.4  bits: 480.2 E(85289): 5.5e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:2-428)

           10        20        30        40        50        60    
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                     ::::::::::::::::::::::::::::::
XP_005                              MDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                            10        20        30 

           70        80        90       100       110       120    
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
              40        50        60        70        80        90 

          130       140       150       160       170       180    
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
             100       110       120       130       140       150 

          190       200       210       220       230       240    
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
             160       170       180       190       200       210 

          250       260       270       280       290       300    
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
             220       230       240       250       260       270 

          310       320       330       340       350       360    
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
             280       290       300       310       320       330 

          370       380       390       400       410        420   
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_005 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
             340       350       360       370       380       390 

           430       440       450       460                       
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF                  
       ::::::::::::::::::: .      .: ..    :                       
XP_005 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
             400       410       420       430       440       450 

XP_005 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
             460       470       480       490    

>>NP_001257972 (OMIM: 164005,602535,614753) nuclear fact  (510 aa)
 initn: 2659 init1: 2632 opt: 2780  Z-score: 2544.2  bits: 480.2 E(85289): 5.6e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:18-444)

           10        20        30        40        50        60    
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                     ::::::::::::::::::::::::::::::
NP_001              MEMSWARQSLAGIPAACDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                            10        20        30        40       

           70        80        90       100       110       120    
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
        50        60        70        80        90       100       

          130       140       150       160       170       180    
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
       110       120       130       140       150       160       

          190       200       210       220       230       240    
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
       170       180       190       200       210       220       

          250       260       270       280       290       300    
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
       230       240       250       260       270       280       

          310       320       330       340       350       360    
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
       290       300       310       320       330       340       

          370       380       390       400       410        420   
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
       350       360       370       380       390       400       

           430       440       450       460                       
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF                  
       ::::::::::::::::::: .      .: ..    :                       
NP_001 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
       410       420       430       440       450       460       

NP_001 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
       470       480       490       500       510

>>XP_011526342 (OMIM: 164005,602535,614753) PREDICTED: n  (518 aa)
 initn: 2659 init1: 2632 opt: 2780  Z-score: 2544.1  bits: 480.2 E(85289): 5.7e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:26-452)

           10        20        30        40        50        60    
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                                     ::::::::::::::::::::::::::::::
XP_011      MGATEPGGDTSSVCVWTATLSVRVCDEFHPFIEALLPHVRAFSYTWFNLQARKRK
                    10        20        30        40        50     

           70        80        90       100       110       120    
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
          60        70        80        90       100       110     

          130       140       150       160       170       180    
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
         120       130       140       150       160       170     

          190       200       210       220       230       240    
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
         180       190       200       210       220       230     

          250       260       270       280       290       300    
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
         240       250       260       270       280       290     

          310       320       330       340       350       360    
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
         300       310       320       330       340       350     

          370       380       390       400       410        420   
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
         360       370       380       390       400       410     

           430       440       450       460                       
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF                  
       ::::::::::::::::::: .      .: ..    :                       
XP_011 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
         420       430       440       450       460       470     

XP_011 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
         480       490       500       510        

>>XP_016882326 (OMIM: 164005,602535,614753) PREDICTED: n  (400 aa)
 initn: 2518 init1: 2185 opt: 2208  Z-score: 2023.6  bits: 383.5 E(85289): 5.6e-106
Smith-Waterman score: 2631; 90.5% identity (90.5% similar) in 441 aa overlap (26-465:1-400)

               10        20        30        40        50        60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                :::::::::::::::::::::::::::::::::::
XP_016                          MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
       ::::::::::::::::::::::::::::::::::::::::::::                
XP_016 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG----------------
         280       290       300       310                         

              370       380       390       400       410          
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
                                :::::::::::::::::::::::::::::::::: 
XP_016 -------------------------SPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
                              320       330       340       350    

     420       430       440       450       460     
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
          360       370       380       390       400

>>XP_006722823 (OMIM: 164005,602535,614753) PREDICTED: n  (459 aa)
 initn: 2451 init1: 2118 opt: 2144  Z-score: 1964.4  bits: 372.8 E(85289): 1.1e-102
Smith-Waterman score: 2567; 88.3% identity (88.8% similar) in 445 aa overlap (22-465:57-459)

                        10        20        30        40        50 
pF1KB9          MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
                                     ::   .  :   .:::::::::::::::::
XP_006 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
         30        40        50        60         70        80     

              60        70        80        90       100       110 
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
          90       100       110       120       130       140     

             120       130       140       150       160       170 
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
         150       160       170       180       190       200     

             180       190       200       210       220       230 
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
         210       220       230       240       250       260     

             240       250       260       270       280       290 
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
         270       280       290       300       310       320     

             300       310       320       330       340       350 
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_006 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG-------
         330       340       350       360       370               

             360       370       380       390       400       410 
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
                                         ::::::::::::::::::::::::::
XP_006 ----------------------------------SPRATASALHFPSTSIIQQSSPYFTH
                                        380       390       400    

              420       430       440       450       460     
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
          410       420       430       440       450         

>>XP_005259974 (OMIM: 164005,602535,614753) PREDICTED: n  (520 aa)
 initn: 2320 init1: 2118 opt: 2144  Z-score: 1963.6  bits: 372.8 E(85289): 1.2e-102
Smith-Waterman score: 2412; 84.5% identity (85.9% similar) in 440 aa overlap (22-460:57-454)

                        10        20        30        40        50 
pF1KB9          MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
                                     ::   .  :   .:::::::::::::::::
XP_005 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
         30        40        50        60         70        80     

              60        70        80        90       100       110 
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
          90       100       110       120       130       140     

             120       130       140       150       160       170 
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
         150       160       170       180       190       200     

             180       190       200       210       220       230 
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
         210       220       230       240       250       260     

             240       250       260       270       280       290 
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
         270       280       290       300       310       320     

             300       310       320       330       340       350 
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_005 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG-------
         330       340       350       360       370               

             360       370       380       390       400       410 
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
                                         ::::::::::::::::::::::::::
XP_005 ----------------------------------SPRATASALHFPSTSIIQQSSPYFTH
                                        380       390       400    

              420       430       440       450       460          
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF     
       :::::::: ::::::::::::::::::::::: .      .: ..    :          
XP_005 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLP
          410       420       430       440       450       460    

XP_005 MPDSKSTSTAPDGAALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
          470       480       490       500       510       520




465 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:26:52 2016 done: Thu Nov  3 23:26:54 2016
 Total Scan time: 10.520 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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