Result of FASTA (ccds) for pF1KB9448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9448, 487 aa
  1>>>pF1KB9448 487 - 487 aa - 487 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5677+/-0.00095; mu= 12.3649+/- 0.057
 mean_var=92.3129+/-18.137, 0's: 0 Z-trim(107.6): 29  B-trim: 440 in 1/51
 Lambda= 0.133488
 statistics sampled from 9639 (9652) to 9639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.296), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2            ( 487) 3199 626.3 2.2e-179
CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2           ( 486) 3180 622.6 2.8e-178
CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12          ( 461)  617 129.0   1e-29
CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12           ( 525)  617 129.1 1.2e-29


>>CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2                 (487 aa)
 initn: 3199 init1: 3199 opt: 3199  Z-score: 3333.8  bits: 626.3 E(32554): 2.2e-179
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)

               10        20        30        40        50        60
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
              430       440       450       460       470       480

              
pF1KB9 TEPEDSR
       :::::::
CCDS23 TEPEDSR
              

>>CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2                (486 aa)
 initn: 2382 init1: 2382 opt: 3180  Z-score: 3314.1  bits: 622.6 E(32554): 2.8e-178
Smith-Waterman score: 3180; 99.8% identity (99.8% similar) in 487 aa overlap (1-487:1-486)

               10        20        30        40        50        60
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALSSQ-PEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
               370       380       390       400       410         

              430       440       450       460       470       480
pF1KB9 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
     420       430       440       450       460       470         

              
pF1KB9 TEPEDSR
       :::::::
CCDS82 TEPEDSR
     480      

>>CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12               (461 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 646.9  bits: 129.0 E(32554): 1e-29
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (2-342:33-391)

                                            10        20        30 
pF1KB9                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                     : :::::::::::::.::.::::::...::
CCDS81 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB9 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS81 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
             70        80        90       100       110       120  

             100       110           120       130       140       
pF1KB9 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
CCDS81 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
            130       140       150       160               170    

       150       160       170        180              190         
pF1KB9 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
CCDS81 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
             180       190       200       210       220       230 

                   200       210       220       230       240     
pF1KB9 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
CCDS81 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
             240       250       260       270       280       290 

         250       260       270       280       290       300     
pF1KB9 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS81 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
             300       310       320       330       340       350 

         310       320       330          340       350       360  
pF1KB9 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
       :: ::  . . .. .  :      :..: : :    :..:                    
CCDS81 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
             360       370       380       390       400       410 

            370       380       390       400       410       420  
pF1KB9 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
                                                                   
CCDS81 SASLSGESLDGHLQEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ          
             420       430       440       450       460           

>>CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12                (525 aa)
 initn: 1095 init1: 576 opt: 617  Z-score: 646.0  bits: 129.1 E(32554): 1.2e-29
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (2-342:33-391)

                                            10        20        30 
pF1KB9                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                     : :::::::::::::.::.::::::...::
CCDS89 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB9 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS89 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
             70        80        90       100       110       120  

             100       110           120       130       140       
pF1KB9 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
CCDS89 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
            130       140       150       160               170    

       150       160       170        180              190         
pF1KB9 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
CCDS89 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
             180       190       200       210       220       230 

                   200       210       220       230       240     
pF1KB9 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
CCDS89 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
             240       250       260       270       280       290 

         250       260       270       280       290       300     
pF1KB9 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS89 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
             300       310       320       330       340       350 

         310       320       330          340       350       360  
pF1KB9 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
       :: ::  . . .. .  :      :..: : :    :..:                    
CCDS89 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
             360       370       380       390       400       410 

            370       380       390       400       410       420  
pF1KB9 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
                                                                   
CCDS89 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
             420       430       440       450       460       470 




487 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:26:17 2016 done: Thu Nov  3 23:26:17 2016
 Total Scan time:  3.440 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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