Result of FASTA (ccds) for pF1KB9414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9414, 713 aa
  1>>>pF1KB9414 713 - 713 aa - 713 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2219+/-0.00091; mu= 4.2167+/- 0.055
 mean_var=237.8905+/-48.350, 0's: 0 Z-trim(114.4): 13  B-trim: 0 in 0/51
 Lambda= 0.083154
 statistics sampled from 14982 (14992) to 14982 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.461), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS55165.1 CNOT4 gene_id:4850|Hs108|chr7          ( 713) 4901 601.1 1.9e-171
CCDS55167.1 CNOT4 gene_id:4850|Hs108|chr7          ( 710) 4859 596.0 6.1e-170
CCDS55164.1 CNOT4 gene_id:4850|Hs108|chr7          ( 642) 3773 465.7 9.4e-131
CCDS43650.1 CNOT4 gene_id:4850|Hs108|chr7          ( 639) 3731 460.7 3.1e-129
CCDS55166.1 CNOT4 gene_id:4850|Hs108|chr7          ( 575) 3708 457.9 1.9e-128
CCDS47719.1 CNOT4 gene_id:4850|Hs108|chr7          ( 572) 3666 452.9 6.3e-127


>>CCDS55165.1 CNOT4 gene_id:4850|Hs108|chr7               (713 aa)
 initn: 4901 init1: 4901 opt: 4901  Z-score: 3191.6  bits: 601.1 E(32554): 1.9e-171
Smith-Waterman score: 4901; 100.0% identity (100.0% similar) in 713 aa overlap (1-713:1-713)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
              610       620       630       640       650       660

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
              670       680       690       700       710   

>>CCDS55167.1 CNOT4 gene_id:4850|Hs108|chr7               (710 aa)
 initn: 4861 init1: 3025 opt: 4859  Z-score: 3164.4  bits: 596.0 E(32554): 6.1e-170
Smith-Waterman score: 4859; 99.4% identity (99.6% similar) in 713 aa overlap (1-713:1-710)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
CCDS55 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       540       550       560       570       580       590       

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       600       610       620       630       640       650       

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       660       670       680       690       700       710

>>CCDS55164.1 CNOT4 gene_id:4850|Hs108|chr7               (642 aa)
 initn: 3743 init1: 3743 opt: 3773  Z-score: 2460.9  bits: 465.7 E(32554): 9.4e-131
Smith-Waterman score: 4272; 90.0% identity (90.0% similar) in 713 aa overlap (1-713:1-642)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
CCDS55 VA----------------------------------------------------------
                                                                   

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                         550       560       570       580         

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
     590       600       610       620       630       640  

>>CCDS43650.1 CNOT4 gene_id:4850|Hs108|chr7               (639 aa)
 initn: 3701 init1: 1865 opt: 3731  Z-score: 2433.7  bits: 460.7 E(32554): 3.1e-129
Smith-Waterman score: 4230; 89.5% identity (89.6% similar) in 713 aa overlap (1-713:1-639)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
CCDS43 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
CCDS43 VA----------------------------------------------------------
                                                                   

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                  540       550       560       570       580      

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
        590       600       610       620       630         

>>CCDS55166.1 CNOT4 gene_id:4850|Hs108|chr7               (575 aa)
 initn: 3708 init1: 3708 opt: 3708  Z-score: 2419.4  bits: 457.9 E(32554): 1.9e-128
Smith-Waterman score: 3708; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
CCDS55 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA                         
              550       560       570                              

>>CCDS47719.1 CNOT4 gene_id:4850|Hs108|chr7               (572 aa)
 initn: 3668 init1: 1850 opt: 3666  Z-score: 2392.2  bits: 452.9 E(32554): 6.3e-127
Smith-Waterman score: 3666; 99.3% identity (99.4% similar) in 542 aa overlap (1-542:1-539)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
CCDS47 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
CCDS47 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA                         
       540       550       560       570                           




713 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:14:13 2016 done: Thu Nov  3 23:14:13 2016
 Total Scan time:  2.840 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com