GENSCAN 1.0	Date run:  3-Nov-116	Time: 23:04:06

Sequence gi568815595f:23854535_24077416 : 222882 bp : 41.51% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   7037   7076   40                              -3.05
 1.01 Init +   7085   7359  275  1  2   43   72   193 0.391   9.69
 1.02 Intr +  18596  18671   76  2  1   64  115    49 0.143   3.80
 1.03 Intr +  24111  24277  167  2  2   26  101   103 0.394   3.24
 1.04 Intr +  25078  25164   87  1  0   93   94    48 0.379   4.07
 1.05 Intr +  33033  33165  133  0  1   53  116   121 0.747  11.13
 1.06 Intr +  39632  39861  230  1  2    8   72   154 0.286   1.54
 1.07 Term +  40304  40502  199  2  1   53   41   128 0.681   0.49
 1.08 PlyA +  41787  41792    6                               1.05

 2.04 PlyA -  43282  43277    6                               1.05
 2.03 Term -  46515  46235  281  1  2   36   37   265 0.767  10.82
 2.02 Intr -  48439  48352   88  1  1   47   36   122 0.512   1.52
 2.01 Init -  53145  53083   63  0  0   69   81    72 0.610   5.80
 2.00 Prom -  59793  59754   40                              -7.15

 3.00 Prom +  61768  61807   40                              -7.45
 3.01 Init +  63326  63497  172  1  1   99  102   209 0.995  23.05
 3.02 Intr +  63906  64042  137  1  2   91   84   171 0.999  16.37
 3.03 Term +  64662  64967  306  2  0   91   34   206 0.998   9.63
 3.04 PlyA +  64997  65002    6                               1.05

 4.03 PlyA -  65343  65338    6                               1.05
 4.02 Term -  71998  71850  149  2  2   64   43   206 0.978  10.78
 4.01 Init -  73020  72954   67  0  1   65   44    26 0.304  -2.81
 4.00 Prom -  76023  75984   40                              -7.55

 5.00 Prom +  78421  78460   40                              -6.65
 5.01 Init +  82427  82552  126  1  0   63   97   132 0.847  11.81
 5.02 Intr +  91671  91948  278  2  2    4   -9   269 0.007   4.19
 5.03 Intr + 100064 100269  206  2  2   88  108    95 0.410   9.42
 5.04 Intr + 101503 101591   89  2  2   96   98    49 0.973   5.47
 5.05 Intr + 105137 105281  145  1  1   82   80    77 0.990   5.23
 5.06 Intr + 107443 108071  629  2  2   50   40   468 0.758  29.20
 5.07 Intr + 110443 110628  186  0  0   48   92    75 0.650   2.86
 5.08 Intr + 113279 113489  211  1  1  113  115   210 0.998  23.76
 5.09 Term + 122689 122885  197  2  2   60   48   114 0.804   1.19
 5.10 PlyA + 122992 122997    6                               1.05

 6.04 PlyA - 123896 123891    6                               1.05
 6.03 Term - 127209 126818  392  1  2   30   37   282 0.872  11.46
 6.02 Intr - 127873 127554  320  0  2   85   97   177 0.628  12.98
 6.01 Init - 134533 134460   74  1  2  115   99    27 0.910   7.17
 6.00 Prom - 140797 140758   40                              -6.85

 7.07 PlyA - 141219 141214    6                               1.05
 7.06 Term - 147631 147479  153  1  0   90   38   104 0.549   2.54
 7.05 Intr - 162401 162340   62  0  2   89   80    86 0.254   5.43
 7.04 Intr - 162824 162680  145  2  1  -49  103   115 0.232  -1.77
 7.03 Intr - 164369 164209  161  0  2   74   93   155 0.670  13.39
 7.02 Intr - 166065 165926  140  2  2   60   58   113 0.463   4.69
 7.01 Init - 172293 172145  149  0  2   83   59    88 0.142   5.01
 7.00 Prom - 186433 186394   40                              -4.35

 8.03 PlyA - 186451 186446    6                               1.05
 8.02 Term - 188860 188648  213  1  0   37   44   143 0.565   1.05
 8.01 Init - 191760 191623  138  0  0   75   36   126 0.677   6.29
 8.00 Prom - 198744 198705   40                              -3.65

 9.04 PlyA - 198941 198936    6                               1.05
 9.03 Term - 200485 200223  263  2  2   75   50   109 0.155   0.50
 9.02 Intr - 200708 200541  168  0  0   11   86   124 0.087   3.50
 9.01 Init - 210465 210339  127  0  1   60   87    98 0.951   7.27
 9.00 Prom - 214555 214516   40                              -4.85

10.03 PlyA - 215793 215788    6                               1.05
10.02 Term - 216259 216073  187  0  1   40   48   154 0.665   2.58
10.01 Init - 217796 217708   89  2  2   61   14   144 0.584   4.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  62857  62636  222  1  0   71   45   314 0.993  21.33
S.002 Init -  63004  62981   24  1  0   67   79    33 0.811  -0.11
S.003 Term -  97284  97063  222  0  0   60   37   157 0.940   3.73
S.004 Init -  97659  97432  228  0  0   88   63   111 0.918   7.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_1|388_aa
MPRETHWRRNTQVDGRREECTGVGAHWDASRPSTGGMTQSLAGAVGEELGHQAARLQGKT
ISLLAAPSAESCFHSIKPRTHSPSPHVILFFWLWPSHTWCRFRKISQYKCEKMGVKMAHA
NPIVNCSCEGSRLRAPYENLMPDDLLLSPITPTWDCLVAGKQARGLPTDSTLCVCPNIWG
GALIPVRGHQGGLGRGGGQGTSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY
PFKPPKTLRVTEYSSQSSGRRRDPKPDFQIVPVKITQDDVTVDNGQQELSKASLRSSSEL
IRSWNHYCLPSCLYIELELPVLQPAPQLLLITELTHGQPALAVTLVIILSDFTGHVDAAS
SNLVSYSLTSPMVSSSLPQPFTTPVVIS

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_1|1167_bp
atgccgagagaaacacattggcgaaggaatacacaggtggatggacgtcgagaggaatgc
actggtgtaggagcacactgggatgccagcaggccatcgactggtggaatgacacaaagt
ttggctggggcagttggagaagagttgggccaccaagcggccagactccaggggaaaacc
atttcccttctggctgccccatctgctgagagctgcttccactcaataaaacctcgcact
cattctccaagcccacatgtgatcctattcttctggctgtggccctctcacacctggtgt
agattcaggaaaatctcacagtacaaatgtgagaaaatgggagtaaaaatggcacacgca
aaccctattgtgaactgctcatgtgagggatctaggttgcgtgctccttatgagaatcta
atgcctgatgatctgctactgtcacccatcacccccacatgggactgtctagttgcagga
aaacaagctcgggggctccccactgattctacattatgcgtctgtcctaacatctgggga
ggtgctctgatacctgtccgtgggcaccagggaggcctgggccgcggcggaggacagggc
accagtgctggtcccaaaggcgataacatctatgaatggagatcaaccattctagggcct
ccaggatccgtgtatgagggtggtgtattctttctcgatatcacttttacaccagaatat
cccttcaagcctccaaagacactgcgcgtgacagaatacagcagtcaaagctcggggagg
agaagagaccccaaaccagattttcagatagtgcccgtaaagattacacaagacgatgtg
acagtagacaatgggcagcaagaactgtcaaaggcctctctgaggagcagcagtgaactc
atcagatcttggaaccactactgtcttccttcctgtctgtacattgagcttgagctccct
gtgctccagccggccccccaactgctcctcatcacagagctgactcatggtcaacctgct
ctcgccgttactctggtcataattcttagtgatttcactggccacgtagatgctgcttcc
agtaacctggtctcttattctttgacttctccaatggtctcatcatccttacctcagcca
ttcaccactcccgtggtcatatcctag

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_2|143_aa
MVKRGSNGNYTFSATDSICTKILQIPLDGDKELAASVLGAERESRRTSTFRMEDCETMED
VYMASVETDRGVKEQLHLYDTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLK
KEIDKFKDKKEASGYVKNAKCEL

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_2|432_bp
atggtgaagagaggatctaatggcaactatacgtttagtgccactgactcgatttgcact
aagattctccagattcccctggatggggataaagagctggctgccagtgttttgggagca
gaaagggaaagccggaggacttcaacattcagaatggaagattgcgaaacaatggaagat
gtatacatggcttcagtagaaacagaccgaggagtaaaagaacagttacatctttatgac
accagaggtctacaggaaggcgtggagctgccaaagcattatttttcatttgctgatggc
ttcgttcttgtgtacagtgtgaataaccttgaatcctttcaaagagtggagcttctgaag
aaagaaatcgataagttcaaagacaaaaaagaggcaagtggatatgttaaaaatgccaaa
tgtgaattataa

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_3|204_aa
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
HHTIGGSRRAAWRRRNTLQLHRYR

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_3|615_bp
atgggtgcatacaagtacatccaggagctatggagaaagaagcagtctgatgtcatgcgc
tttcttctgagggtccgctgctggcagtaccgccagctctctgctctccacagggctccc
cgccccacccggcctgataaagcgcgccgactgggctacaaggccaagcaaggttacgtt
atatataggattcgtgttcgccgtggtggccgaaaacgcccagttcctaagggtgcaact
tacggcaagcctgtccatcatggtgttaaccagctaaagtttgctcgaagccttcagtcc
gttgcagaggagcgagctggacgccactgtggggctctgagagtcctgaattcttactgg
gttggtgaagattccacatacaaattttttgaggttatcctcattgatccattccataaa
gctatcagaagaaatcctgacacccagtggatcaccaaaccagtccacaagcacagggag
atgcgtgggctgacatctgcaggccgaaagagccgtggccttggaaagggccacaagttc
caccacactattggtggctctcgccgggcagcttggagaaggcgcaatactctccagctc
caccgttaccgctaa

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_4|71_aa
MPIKSNAFISFGGVSCRLPGFQKNDTKKKKRKKRKRKEKERKRKKRKKREEEDEEQEEEE
EGGGGRRKKKK

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_4|216_bp
atgccaattaaatcaaatgctttcatcagttttggaggagtgagttgccgtttgccagga
tttcagaagaatgacacaaaaaaaaagaagaggaagaagaggaagaggaaagagaaggag
agaaagaggaagaagagaaaaaagagagaagaggaggacgaggagcaagaggaggaggag
gaaggaggaggaggaagaagaaagaagaagaaataa

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_5|688_aa
MRCTWRIHQWRRAPDKLKLSEELIVEKGPTWVSKSPLSIGDKRALTPQCTGRRTLFSRGD
PKARTPRKPNEPAPGEAGSCIPCRFRGGSAGRGRAAGRRRRLGEGVGLSRRDTLEGALRC
FDPERLPADWVAPPLEGSENSFQSSSSSVPSSPNSSNSDTNGNPKNGDLANIEGILKNDR
IDCSMKTSKSSAPGMTKSHSGVTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSI
QQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEM
QSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSSPPSSDFAKE
EVIGMVTRAHKDTFMYNQEQQENSAESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPC
SESQQHLNGQFKGRNIMHYPNGHAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENKNS
YLCNTGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQ
HDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSE
KLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIF
TKLLLKLPDLRSLNNMHSEELLAFKVHP

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_5|2067_bp
atgcgctgcacttggagaattcaccagtggaggagagctcctgataaactgaagctgagt
gaagagttgattgttgaaaagggacccacctgggtctctaagtctcctctaagtattggc
gacaagcgggcgctgacaccgcagtgcaccggacgccgcacgctcttttcgcgaggtgac
cccaaggcgcggaccccgcgcaaaccaaacgaaccggcgcctggggaggctggtagctgc
ataccttgcagattccgaggaggaagtgcaggacgagggcgtgctgcaggccggaggagg
cgcctcggggaaggcgtggggctttcccgaagggatacgctcgaaggagctctgaggtgc
ttcgatcccgagcgactccccgcagactgggtagcaccgccccttgagggttctgagaat
agtttccagtcctcctcctcttctgttccatcttctccaaatagctctaattctgatacc
aatggtaatcccaagaatggtgatctcgccaatattgaaggcatcttgaagaatgatcga
atagattgttctatgaaaacaagcaaatcgagtgcacctgggatgacaaaaagtcatagt
ggtgtgacaaaatttagtggcatggttctactgtgtaaagtctgtggggatgtggcgtca
ggattccactatggagttcatgcttgcgaaggctgtaagggtttctttcggagaagtatt
caacaaaacatccagtacaagaagtgcctgaagaatgaaaactgttctataatgagaatg
aataggaacagatgtcagcaatgtcgcttcaaaaagtgtctgtctgttggaatgtcaaga
gatgctgttcggtttggtcgtattcctaagcgtgaaaaacagaggatgctaattgaaatg
caaagtgcaatgaagaccatgatgaacagccagttcagtggtcacttgcaaaatgacaca
ttagtagaacatcatgaacagacagccttgccagcccaggaacagctgcgacccaagccc
caactggagcaagaaaacatcaaaagctcttctcctccatcttctgattttgcaaaggaa
gaagtgattggcatggtgaccagagctcacaaggatacctttatgtataatcaagagcag
caagaaaactcagctgagagcatgcagccccagagaggagaacggattcccaagaacatg
gagcaatataatttaaatcatgatcattgcggcaatgggcttagcagccattttccctgt
agtgagagccagcagcatctcaatggacagttcaaagggaggaatataatgcattaccca
aatggtcatgccatttgtattgcaaatggacattgtatgaacttctccaatgcttatact
caaagagtatgtgatagagttccgatagatggattttctcagaatgagaacaagaatagt
tacctgtgcaacactggaggaagaatgcatctggtttgtccaatgagtaagtctccatat
gtggatcctcataaatcaggacatgaaatctgggaagaattttcgatgagcttcactcca
gcagtgaaagaagtggtggaatttgcaaagcgtattcctgggttcagagatctctctcag
catgaccaggtcaaccttttaaaggctgggacttttgaggttttaatggtacggttcgca
tcattatttgatgcaaaggaacgtactgtcacctttttaagtggaaagaaatatagtgtg
gatgatttacactcaatgggagcaggggatctgctaaactctatgtttgaatttagtgag
aagctaaatgccctccaacttagtgatgaagagatgagtttgtttacagctgttgtcctg
gtatctgcagatcgatctggaatagaaaacgtcaactctgtggaggctttgcaggaaact
ctcattcgtgcactaaggaccttaataatgaaaaaccatccaaatgaggcctctattttt
acaaaactgcttctaaagttgccagatcttcgatctttaaacaacatgcactctgaggag
ctcttggcctttaaagttcacccttaa

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_6|261_aa
MANLKLPMRSQLAHKIPETLAFMSWLRSACSPCYWHSLRPWSKVGAKSWGHEQQQETDGF
LGRRRRVPSEAPPSGYRGPECWQLSRQPCRPEWKLVVPFPGPPMAARGPISMHFLLSEAH
KIPRLSQSWGKAPLHLTLHSSVYLILPGCRTRTWDPLNGKAKSCNTNRIETCPLLTTLWV
KERKAAASPSGTSHLGTPQAKAVIPSLEPCGSWHLQPSGHHCIPRCQLGKLLMVHLVQLQ
PRREPAPGDVYPMAAADVSAQ

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_6|786_bp
atggccaatctcaagctaccaatgcgaagtcaactggctcacaaaattcctgaaacattg
gctttcatgagctggctcagaagtgcctgttccccctgctattggcactcactccgacct
tggagcaaagttggggccaagtcctggggtcatgaacagcagcaagagacagacgggttc
ctgggcagaaggaggcgggtccccagtgaggccccaccttcaggctacagagggcctgaa
tgctggcaactgagccgccagccctgcagaccagagtggaaacttgtggtgccttttcca
ggcccacccatggctgcccgtggaccaatcagcatgcacttcctcctctccgaggcccat
aaaatccctaggctgagtcagagctggggaaaagctcctcttcatcttaccctccactca
tctgtgtacctcattcttcctggttgcaggacaagaacttgggacccactgaatggcaaa
gctaaaagttgtaacacaaataggattgaaacatgccccttgctcaccacgctgtgggtg
aaggagagaaaagctgcagccagcccttcagggacgtcacacctgggaacgccccaagcc
aaggctgtgattccctctttggagccctgtggttcctggcatcttcagccttccggccac
cactgcattcccaggtgccagctgggaaagctgctcatggtgcacctggtccagctgcag
cctcgcagagagcctgcacctggagatgtctatcccatggcagcagctgatgtgtctgca
cagtag

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_7|269_aa
MDEAGNHHPRQTNTGTENQTLHVLTHKWELNNENIWTQGGEHHTLEPVGREALTHPQKRS
DGGGGPSGVASARTPAAAGEARPGLSALWSQWGPGSGVGSRLVSLSTACRANRVEQDQQA
RAKLKQRRRQPQRFLAGEQHPEDFVIAGVKRAPLESTPMKEREERIRQKGIQAFDVGPAA
SVNPMVSSGAKWPIRIMPGKECSNLRESVRGKLQILEIQTWAGSYPVAFSDSQAFGFRLN
YAAGFPGSPAFRQHITGLLGLQNCVTQFP

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_7|810_bp
atggatgaagctggaaaccatcatcctcggcaaactaacacaggaacagaaaaccaaaca
ctgcatgttctcactcataagtgggagttgaacaatgagaacatatggacacagggagga
gaacatcatacactggagcctgtcgggagagaagcactgacacatccacaaaaacgcagt
gatggtggcggcggcccatctggagtggcctctgcgagaacaccagctgcagcaggggag
gcgcggccgggactgagcgctctgtggagccagtgggggccaggatcaggcgtgggatcc
aggctggtatctctgagcacagcctgcagggccaatcgagtggaacaagaccagcaggcg
cgagcaaaactcaagcagaggcgccgccagccacagaggtttctggctggtgaacaacac
ccagaggattttgtgatagcaggagtaaagagagcacccttggaatccacacctatgaaa
gagagagaggaaaggatcaggcagaagggaatccaagcctttgatgtaggtccagcagcc
tcagttaacccaatggtgagctctggagccaaatggcccatccgaattatgccagggaaa
gaatgttctaacctccgggaaagtgtacgagggaagctccagattctggaaattcagact
tgggctgggagttacccagttgccttctctgattctcaggcctttggattcagactgaac
tatgctgctggctttcctggttctccagctttcaggcagcatatcacgggacttcttggc
ctccaaaactgtgtgacccaattcccataa

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_8|116_aa
MTEGENRPWLRGQFQVLDPGSGSISSDDEIDAMEGIGTGDIELGLQVLQATTPMELPVDR
QRKLPAGHMSKPALHPAQESLQILNIRLQPQQEPLSKAPSRGLAHKIMSKIKWFIL

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_8|351_bp
atgacagaaggggaaaataggccatggttaagaggacaattccaagttttagatcctggg
agtggttccatttcaagtgatgatgagattgatgccatggagggcatagggacaggagac
atagagctggggcttcaggtgctccaggcaacaacccccatggagctcccagtggacagg
caacgtaaattgccagctggccacatgagtaagccagctttacatccagcccaagaaagc
cttcagatacttaacatcagactgcaaccccaacaagaaccactcagcaaagccccttct
agaggactggcccacaaaatcatgagcaaaataaaatggtttatactatga

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_9|185_aa
MTVDYHRFNQVATLITAAVPDVLYQFASAGKAGNTLSLSCLRENKIPRNPTYKGCEGPLQ
GELQTTAQRNKRGHKQMEEHSMLMNRKIQYRENGHTAQELEKTTLKFIWKQKRAHIAKTN
LSQKNKAGGITLPDFKLYYKATVTKTAWYWYQTRDIDQWNRTEPSEITPHIYNRLIFDKP
DKNKK

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_9|558_bp
atgacggtggattatcataggtttaaccaggtagcaactttaattacagctgccgtacca
gatgtgctgtaccagtttgcttcagctggcaaggctggcaatacactttcactgtcctgc
ctcagagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaa
ggagaactacaaaccactgctcaacgaaataaaagaggacacaaacaaatggaagaacat
tccatgctcatgaataggaagattcaatatcgtgaaaatggccatactgcccaagaattg
gaaaaaactactttaaagttcatatggaaacaaaaaagagcccacattgccaagacaaac
ctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaag
gctacagtaaccaaaacagcatggtactggtaccaaaccagagatatagaccaatggaac
agaacagagccctcagaaataacaccacacatctacaaccgtctgatctttgacaaacct
gacaaaaacaagaaatag

>gi568815595f:23854535_24077416|GENSCAN_predicted_peptide_10|91_aa
MKDSKAGKEDGEMRAEKYAEELWGPEGEEHTFHNSKDIGSTYMPVNGGLDKENVVHIHHG
ILHSNTRDEIMSLAAKQMQLEAIVLRKLMQE

>gi568815595f:23854535_24077416|GENSCAN_predicted_CDS_10|276_bp
atgaaggacagcaaggcaggaaaagaggacggtgagatgagggcagagaagtatgctgaa
gagctctggggaccagagggtgaagagcacacttttcacaatagcaaagacataggatca
acctacatgcccgtcaacggtggactggataaagaaaatgtggtacatatacaccatgga
atactacacagcaatacaagagatgaaatcatgtcccttgcagcaaaacagatgcagctg
gaggcgattgtcctaagaaaattgatgcaggaatga