Result of FASTA (ccds) for pF1KB4275
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4275, 574 aa
  1>>>pF1KB4275 574 - 574 aa - 574 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1101+/-0.00112; mu= -9.8096+/- 0.068
 mean_var=469.2624+/-95.971, 0's: 0 Z-trim(117.1): 97  B-trim: 479 in 1/51
 Lambda= 0.059206
 statistics sampled from 17729 (17826) to 17729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.548), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(32554)
CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12         ( 574) 4105 364.9 1.5e-100
CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1         ( 588) 1265 122.4 1.6e-27
CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1         ( 622)  784 81.3 3.9e-15


>>CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12              (574 aa)
 initn: 4105 init1: 4105 opt: 4105  Z-score: 1918.7  bits: 364.9 E(32554): 1.5e-100
Smith-Waterman score: 4105; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)

               10        20        30        40        50        60
pF1KB4 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPGSPTDPNATLSKDEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPGSPTDPNATLSKDEAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKCFRKVPRPRDDPGKGSYWTIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NKCFRKVPRPRDDPGKGSYWTIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVAGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGASGRESAEGPPPLYNTNHDFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGASGRESAEGPPPLYNTNHDFK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSNNYYMYQQQQPPPPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 FSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSNNYYMYQQQQPPPPQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 QQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 PVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 PPQGGTHRPPAPARIADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PPQGGTHRPPAPARIADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSA
              490       500       510       520       530       540

              550       560       570    
pF1KB4 GYNRPAHHMVPRPSVPPPGANEEIPDDFDWDLIT
       ::::::::::::::::::::::::::::::::::
CCDS85 GYNRPAHHMVPRPSVPPPGANEEIPDDFDWDLIT
              550       560       570    

>>CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1              (588 aa)
 initn: 1255 init1: 562 opt: 1265  Z-score: 607.5  bits: 122.4 E(32554): 1.6e-27
Smith-Waterman score: 1285; 40.2% identity (64.4% similar) in 612 aa overlap (1-573:16-587)

                              10        20        30        40     
pF1KB4                MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
                      :.:.:::::::.:::::::.::.:.:  ....:   : :.:   .
CCDS55 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
               10        20        30        40        50          

          50        60        70        80        90       100     
pF1KB4 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
       .  :::.::...:.  :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS55 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
        60        70        80        90       100       110       

         110       120       130       140           150        160
pF1KB4 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI--SR-KRRHPPDDDL
       :: :::::::::::::::: :::: .:::::::::.::: :  :.  .: :.:    . .
CCDS55 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERV
       120       130       140       150       160       170       

              170       180       190       200       210       220
pF1KB4 SQDSPEQEASKSPRGGVAGSGEASLPPEGNPQMSLQSPTSIASYSQGTGSVDGGAVAAGA
       .  . .:..: :::    .: . ::  ..  ...:.:  :. ::.  :.  .  .:. . 
CCDS55 TLYNTDQDGSDSPR----SSLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPE--SVSQSL
       180       190           200       210       220         230 

              230        240       250       260                   
pF1KB4 SGRESAEGPPPLYNT-NHDFKFSYSEINFQDLSWSFRNLYKSMLEKS----------SSS
       . ...     : ::  ..: .. .:: ::.::: :::.::::..:.:          : :
CCDS55 TPQQQ-----PQYNLPERDKQLLFSEYNFEDLSASFRSLYKSVFEQSLSQQGLMNIPSES
                  240       250       260       270       280      

     270       280         290       300       310          320    
pF1KB4 SQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQQQPPQPPPQQ---SQPQQQQAPA
       ::.. .:   .  ::..   . ...:.    .. .  .   .    :   :.::..  :.
CCDS55 SQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHTQPS
        290       300       310       320       330       340      

          330       340       350       360       370        380   
pF1KB4 QGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPPVMAMHPPPLQHGGYHP-HQHHPH
         :     . : : :. .    :  .:  ..  .: :   .:: : ::  .:: :::.  
CCDS55 PHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP---QHPSPHQHIQHHPNHQHQTL
        350        360       370        380          390       400 

           390       400       410       420       430       440   
pF1KB4 SHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDSLKESFKMVNRLNWSSIEQSQFSE
       .:  : ::::: :.. .. ..:       :: ...: :::: .... .:::... :::. 
CCDS55 TH--QAPPPPQ-QVSCNSGVSN-------DWYATLDMLKESCRIASSVNWSDVDLSQFQG
               410        420              430       440       450 

           450       460       470       480               490     
pF1KB4 LMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHVPPQG--------GTHRPPAPAR-
       ::::.:::. :::.::: ..:.::.:::.:.:::: .  :.        :. .:  :.. 
CCDS55 LMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPTKPSQH
             460       470       480       490       500       510 

          500       510       520       530       540         550  
pF1KB4 IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSAGYNRPAH--HMVP-
       :. .    ...:.   : .   :.:. :.    :.  .       ::..:  .  ::.: 
CCDS55 IGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTM-------AGHHRAMNQQHMMPS
             520       530       540              550       560    

                  560       570    
pF1KB4 -----RPSVPPPGANEEIPDDFDWDLIT
            : :.::    ..: :::::: : 
CCDS55 QAFQMRRSLPP----DDIQDDFDWDSIV
          570           580        

>>CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1              (622 aa)
 initn: 1146 init1: 562 opt: 784  Z-score: 385.2  bits: 81.3 E(32554): 3.9e-15
Smith-Waterman score: 1232; 39.4% identity (62.7% similar) in 632 aa overlap (1-570:16-618)

                              10        20        30        40     
pF1KB4                MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
                      :.:.:::::::.:::::::.::.:.:  ....:   : :.:   .
CCDS30 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
               10        20        30        40        50          

          50        60        70        80        90       100     
pF1KB4 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
       .  :::.::...:.  :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS30 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
        60        70        80        90       100       110       

         110       120       130       140             150         
pF1KB4 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI----SRKR-----RH
       :: :::::::::::::::: :::: .:::::::::.::: :  :.     .::     : 
CCDS30 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERA
       120       130       140       150       160       170       

          160           170        180          190            200 
pF1KB4 PPDDDLSQDSPEQE----ASKSPRGGVAG-SGEASL---PPEGN--PQMSLQ---SPTSI
           ....::  .:    .: ::  ..   .....:     .:.  :. ::.   :  :.
CCDS30 STPYSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSL
       180       190       200       210       220       230       

              210       220       230           240       250      
pF1KB4 ASYSQGT-GSVDGGAVAAGASGRESAEGPP---PLYNT-NHDFKFSYSEINFQDLSWSFR
       :: . .. ::: . . ...     :    :   : ::  ..: .. .:: ::.::: :::
CCDS30 ASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFR
       240       250       260       270       280       290       

        260                 270       280         290       300    
pF1KB4 NLYKSMLEKS----------SSSSQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQ
       .::::..:.:          : :::.. .:   .  ::..   . ...:.    .. .  
CCDS30 SLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGL
       300       310       320       330       340       350       

          310          320       330       340       350       360 
pF1KB4 QQPPQPPPQQ---SQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPP
       .   .    :   :.::..  :.  :     . : : :. .    :  .:  ..  .: :
CCDS30 NTTGSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP
       360       370       380       390        400        410     

             370        380       390       400       410       420
pF1KB4 VMAMHPPPLQHGGYHP-HQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
          .:: : ::  .:: :::.  .:  : ::::: :.. .. ..:       :: ...: 
CCDS30 ---QHPSPHQHIQHHPNHQHQTLTH--QAPPPPQ-QVSCNSGVSN-------DWYATLDM
            420       430         440        450              460  

              430       440       450       460       470       480
pF1KB4 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
       :::: .... .:::... :::. ::::.:::. :::.::: ..:.::.:::.:.:::: .
CCDS30 LKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLI
            470       480       490       500       510       520  

                      490        500       510       520       530 
pF1KB4 PPQG--------GTHRPPAPAR-IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPM
         :.        :. .:  :.. :. .    ...:.   : .   :.:. :.    :.  
CCDS30 HSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTT
            530       540       550       560       570       580  

             540         550             560       570    
pF1KB4 YPIPTQDSAGYNRPAH--HMVP------RPSVPPPGANEEIPDDFDWDLIT
       .       ::..:  .  ::.:      : :.::    ..: :::::    
CCDS30 M-------AGHHRAMNQQHMMPSQAFQMRRSLPP----DDIQDDFDWDSIV
                   590       600           610       620  




574 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:32:23 2016 done: Thu Nov  3 21:32:23 2016
 Total Scan time:  4.440 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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