Result of FASTA (ccds) for pF1KB4140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4140, 747 aa
  1>>>pF1KB4140 747 - 747 aa - 747 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8070+/-0.000945; mu= 14.5807+/- 0.057
 mean_var=136.9833+/-27.141, 0's: 0 Z-trim(110.7): 25  B-trim: 0 in 0/54
 Lambda= 0.109582
 statistics sampled from 11769 (11788) to 11769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.362), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS1337.1 QSOX1 gene_id:5768|Hs108|chr1           ( 747) 5083 815.6       0
CCDS30950.1 QSOX1 gene_id:5768|Hs108|chr1          ( 604) 4092 658.8  7e-189
CCDS35178.1 QSOX2 gene_id:169714|Hs108|chr9        ( 698) 1601 265.0 2.8e-70


>>CCDS1337.1 QSOX1 gene_id:5768|Hs108|chr1                (747 aa)
 initn: 5083 init1: 5083 opt: 5083  Z-score: 4349.9  bits: 815.6 E(32554):    0
Smith-Waterman score: 5083; 99.9% identity (100.0% similar) in 747 aa overlap (1-747:1-747)

               10        20        30        40        50        60
pF1KB4 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS13 ARNNEEYLALIFEKGGSYLGREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 RLWGPLEVRRVGRSSKQLVDIPEGQLEARAGRGRGQWLQVLGGGFSYLDISLCVGLYSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLWGPLEVRRVGRSSKQLVDIPEGQLEARAGRGRGQWLQVLGGGFSYLDISLCVGLYSLS
              670       680       690       700       710       720

              730       740       
pF1KB4 FMGLLAMYTYFQAKIRALKGHAGHPAA
       :::::::::::::::::::::::::::
CCDS13 FMGLLAMYTYFQAKIRALKGHAGHPAA
              730       740       

>>CCDS30950.1 QSOX1 gene_id:5768|Hs108|chr1               (604 aa)
 initn: 4092 init1: 4092 opt: 4092  Z-score: 3504.5  bits: 658.8 E(32554): 7e-189
Smith-Waterman score: 4092; 99.8% identity (100.0% similar) in 602 aa overlap (1-602:1-602)

               10        20        30        40        50        60
pF1KB4 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS30 ARNNEEYLALIFEKGGSYLGREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
       ::                                                          
CCDS30 PELI                                                        
                                                                   

>>CCDS35178.1 QSOX2 gene_id:169714|Hs108|chr9             (698 aa)
 initn: 1637 init1: 546 opt: 1601  Z-score: 1375.3  bits: 265.0 E(32554): 2.8e-70
Smith-Waterman score: 1610; 38.1% identity (61.6% similar) in 753 aa overlap (8-746:25-697)

                                10             20        30        
pF1KB4                  MRRCNSGSGPP-----PSLLLLLLWLLAVPGANAAPRSALYSP
                               : ::     : ::.::    . :::..: :  ::  
CCDS35 MAAAGAAVARSPGIGAGPALRARRSPPPRAARLPRLLVLLAAAAVGPGAGGAAR--LYRA
               10        20        30        40        50          

        40        50        60        70        80        90       
pF1KB4 S-DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLA
       . : . .:.. .::::. .: .:: :.:..:::::::..::::.::: ::. :  :. .:
CCDS35 GEDAVWVLDSGSVRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALAGDVRDWASAIRVA
       60        70        80        90       100       110        

       100       110       120       130        140       150      
pF1KB4 ALDCAEETNSAVCRDFNIPGFPTVRFFKAFTKN-GSGAVFPVAGADVQTLRERLIDALES
       :::: :: :.:::.:..:  .:: :.::::::.  .:  :     ...:.:. .:: :..
CCDS35 ALDCMEEKNQAVCHDYDIHFYPTFRYFKAFTKEFTTGENFKGPDRELRTVRQTMIDFLQN
      120       130       140       150       160       170        

         160       170       180       190       200       210     
pF1KB4 HHD-TWPPACPPLEPAKLEEIDGFFARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAV
       : . . ::::: :.: .  .. ...   . .:.:..::...:::.::: :::  .....:
CCDS35 HTEGSRPPACPRLDPIQPSDVLSLLDNRGSHYVAIVFESNSSYLGREVILDLIPYESIVV
      180       190       200       210       220       230        

         220       230       240       250       260       270     
pF1KB4 RRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQ
        :.:. .   ..:.::.. :::::.. ::: . . :.   :.:...::. :  . ...  
CCDS35 TRALDGDKAFLEKLGVSSVPSCYLIYPNGSHGLINVVKPLRAFFSSYLKSLPDVRKKSLP
      240       250       260       270       280       290        

         280       290       300       310       320       330     
pF1KB4 TTVAPTTANKIAPTVWKLADRSKIYMADLESALHYILRIEVGRFPVLEGQRLVALKKFVA
           :   ..   .::.  :.::.: .::::.:::.::.:..    : : .: .:: ::.
CCDS35 LPEKPHKEENSEIVVWREFDKSKLYTVDLESGLHYLLRVELAAHKSLAGAELKTLKDFVT
      300       310       320       330       340       350        

         340       350       360       370         380       390   
pF1KB4 VLAKYFPGRPLVQNFLHSVNEWLKRQKRNKIPYSFFKTALDD--RKEGAVLAKKVNWIGC
       :::: ::::: :...:. ..:::     ..:::.     ...  :  :  :.....:.::
CCDS35 VLAKLFPGRPPVKKLLEMLQEWLASLPLDRIPYNAVLDLVNNKMRISGIFLTNHIKWVGC
      360       370       380       390       400       410        

           400       410       420         430       440       450 
pF1KB4 QGSEPHFRGFPCSLWVLFHFLTVQAARQ--NVDHSQEAAKAKEVLPAIRGYVHYFFGCRD
       :::. ..::.::::: ::: :::.:. .   .  .      . :: ..: ::: ::::..
CCDS35 QGSRSELRGYPCSLWKLFHTLTVEASTHPDALVGTGFEDDPQAVLQTMRRYVHTFFGCKE
      420       430       440       450       460       470        

             460       470       480       490       500       510 
pF1KB4 CASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSA
       :. :::.::  ::  : .:. :.::::..:: ::.::::  ::::.:::.:::  .:: :
CCDS35 CGEHFEEMAKESMDSVKTPDQAILWLWKKHNMVNGRLAGHLSEDPRFPKLQWPTPDLCPA
      480       490       500       510       520       530        

             520       530       540       550       560       570 
pF1KB4 CHNERLDVPVWDVEATLNFLKAHFSPSNIILDFPAAGSAARRDVQNVAAAPELAMGALEL
       ::.:   .  ::   .:.::: :.. .:..  . :       :  . . .  :: :  : 
CCDS35 CHEEIKGLASWDEGHVLTFLKQHYGRDNLLDTYSA-------DQGDSSEGGTLARGE-EE
      540       550       560       570              580        590

             580       590         600       610       620         
pF1KB4 ESRNSTLDPGKPEMMKSPTNTTPHVP--AEGPEASRPPKLHPGLRAAPGQEPPEHMAELQ
       :.:   : :  ::. ..  .:    :  : ::. . : .:: .:    :.        ::
CCDS35 EKR---LTP--PEVSHGDRDTQSVRPPGALGPRPALPESLHHSL---DGK--------LQ
                   600       610       620          630            

     630       640       650       660       670       680         
pF1KB4 RNEQEQPLGQWHLSKRDTGAALLAESRAEKNRLWGPLEVRRVGRSSKQLVDIPEGQLEAR
                                       : ::   ..:: ..      :       
CCDS35 S-------------------------------LDGPGAHKEVGGAA------P-------
                                         640             650       

     690       700       710       720       730       740       
pF1KB4 AGRGRGQWLQVLGGGFSYLDISLCVGLYSLSFMGLLAMYTYFQAKIRALKGHAGHPAA
                  ::  :: ::.:::: ::  : . :..:: .:... :  : .  ::: 
CCDS35 ----------FLGVDFSSLDMSLCVVLYVASSLFLMVMYFFFRVRSRRWKVKHHHPAV
                        660       670       680       690        




747 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:27:21 2016 done: Thu Nov  3 21:27:21 2016
 Total Scan time:  3.820 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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