Result of FASTA (omim) for pF1KB3300
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3300, 723 aa
  1>>>pF1KB3300 723 - 723 aa - 723 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1423+/-0.000571; mu= -10.2351+/- 0.035
 mean_var=581.7748+/-121.869, 0's: 0 Z-trim(119.9): 101  B-trim: 0 in 0/56
 Lambda= 0.053174
 statistics sampled from 34325 (34426) to 34325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.404), width:  16
 Scan time: 12.000

The best scores are:                                      opt bits E(85289)
XP_016870772 (OMIM: 610933,614436) PREDICTED: E3 u ( 723) 4682 375.0 5.9e-103
NP_001005373 (OMIM: 610933,614436) E3 ubiquitin-pr ( 723) 4682 375.0 5.9e-103
NP_001005374 (OMIM: 610933,614436) E3 ubiquitin-pr ( 723) 4682 375.0 5.9e-103
NP_612370 (OMIM: 610933,614436) E3 ubiquitin-prote ( 723) 4682 375.0 5.9e-103
XP_006717379 (OMIM: 610933,614436) PREDICTED: E3 u ( 690) 3395 276.2   3e-73
NP_001177652 (OMIM: 610933,614436) E3 ubiquitin-pr ( 696) 3074 251.6 7.9e-66
XP_016870773 (OMIM: 610933,614436) PREDICTED: E3 u ( 460) 2961 242.7 2.5e-63


>>XP_016870772 (OMIM: 610933,614436) PREDICTED: E3 ubiqu  (723 aa)
 initn: 4682 init1: 4682 opt: 4682  Z-score: 1969.3  bits: 375.0 E(85289): 5.9e-103
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
XP_016 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
              670       680       690       700       710       720

          
pF1KB3 HSS
       :::
XP_016 HSS
          

>>NP_001005373 (OMIM: 610933,614436) E3 ubiquitin-protei  (723 aa)
 initn: 4682 init1: 4682 opt: 4682  Z-score: 1969.3  bits: 375.0 E(85289): 5.9e-103
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
NP_001 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
              670       680       690       700       710       720

          
pF1KB3 HSS
       :::
NP_001 HSS
          

>>NP_001005374 (OMIM: 610933,614436) E3 ubiquitin-protei  (723 aa)
 initn: 4682 init1: 4682 opt: 4682  Z-score: 1969.3  bits: 375.0 E(85289): 5.9e-103
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
NP_001 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
              670       680       690       700       710       720

          
pF1KB3 HSS
       :::
NP_001 HSS
          

>>NP_612370 (OMIM: 610933,614436) E3 ubiquitin-protein l  (723 aa)
 initn: 4682 init1: 4682 opt: 4682  Z-score: 1969.3  bits: 375.0 E(85289): 5.9e-103
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
NP_612 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
              670       680       690       700       710       720

          
pF1KB3 HSS
       :::
NP_612 HSS
          

>>XP_006717379 (OMIM: 610933,614436) PREDICTED: E3 ubiqu  (690 aa)
 initn: 3391 init1: 3391 opt: 3395  Z-score: 1436.0  bits: 276.2 E(85289): 3e-73
Smith-Waterman score: 4395; 95.2% identity (95.4% similar) in 723 aa overlap (1-723:1-690)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
XP_006 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_006 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREIL-------
              490       500       510       520       530          

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
                                 ::::::::::::::::::::::::::::::::::
XP_006 --------------------------EEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
                                     540       550       560       

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       570       580       590       600       610       620       

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       630       640       650       660       670       680       

          
pF1KB3 HSS
       :::
XP_006 HSS
       690

>>NP_001177652 (OMIM: 610933,614436) E3 ubiquitin-protei  (696 aa)
 initn: 3036 init1: 3036 opt: 3074  Z-score: 1302.8  bits: 251.6 E(85289): 7.9e-66
Smith-Waterman score: 4465; 96.0% identity (96.3% similar) in 723 aa overlap (1-723:1-696)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
NP_001 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
NP_001 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQ------
              430       440       450       460       470          

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
                            :::::::::::::::::::::::::::::::::::::::
NP_001 ---------------------EMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
                               480       490       500       510   

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
           520       530       540       550       560       570   

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
           580       590       600       610       620       630   

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
           640       650       660       670       680       690   

          
pF1KB3 HSS
       :::
NP_001 HSS
          

>>XP_016870773 (OMIM: 610933,614436) PREDICTED: E3 ubiqu  (460 aa)
 initn: 2961 init1: 2961 opt: 2961  Z-score: 1258.1  bits: 242.7 E(85289): 2.5e-63
Smith-Waterman score: 2961; 99.6% identity (100.0% similar) in 460 aa overlap (264-723:1-460)

           240       250       260       270       280       290   
pF1KB3 SPDGPTDRFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKD
                                     ::::::::::::::::::::::::::::::
XP_016                               MLEKLEFERRLELGQREHTQLLQQSSSQKD
                                             10        20        30

           300       310       320       330       340       350   
pF1KB3 EILQTVKEEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSS
       ::::::::::::::::::::::::.:::.:::::::::::::::::::::::::::::::
XP_016 EILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSS
               40        50        60        70        80        90

           360       370       380       390       400       410   
pF1KB3 EILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNL
              100       110       120       130       140       150

           420       430       440       450       460       470   
pF1KB3 VQQACSSMAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQQACSSMAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRS
              160       170       180       190       200       210

           480       490       500       510       520       530   
pF1KB3 QIKLIETELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QIKLIETELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREIL
              220       230       240       250       260       270

           540       550       560       570       580       590   
pF1KB3 TELEAKSETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TELEAKSETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHH
              280       290       300       310       320       330

           600       610       620       630       640       650   
pF1KB3 RLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQ
              340       350       360       370       380       390

           660       670       680       690       700       710   
pF1KB3 EPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDI
              400       410       420       430       440       450

           720   
pF1KB3 AQRLRIYHSS
       ::::::::::
XP_016 AQRLRIYHSS
              460




723 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:54:44 2016 done: Thu Nov  3 20:54:45 2016
 Total Scan time: 12.000 Total Display time:  0.140

Function used was FASTA [36.3.4 Apr, 2011]
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