Result of FASTA (ccds) for pF1KB3300
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3300, 723 aa
  1>>>pF1KB3300 723 - 723 aa - 723 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1906+/-0.00133; mu= 1.4774+/- 0.079
 mean_var=472.9771+/-100.060, 0's: 0 Z-trim(112.1): 78  B-trim: 103 in 1/52
 Lambda= 0.058973
 statistics sampled from 12873 (12931) to 12873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.397), width:  16
 Scan time:  4.520

The best scores are:                                      opt bits E(32554)
CCDS6873.1 LRSAM1 gene_id:90678|Hs108|chr9         ( 723) 4682 413.7  5e-115
CCDS55347.1 LRSAM1 gene_id:90678|Hs108|chr9        ( 696) 3074 276.8 7.5e-74


>>CCDS6873.1 LRSAM1 gene_id:90678|Hs108|chr9              (723 aa)
 initn: 4682 init1: 4682 opt: 4682  Z-score: 2178.5  bits: 413.7 E(32554): 5e-115
Smith-Waterman score: 4682; 99.7% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
CCDS68 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
              670       680       690       700       710       720

          
pF1KB3 HSS
       :::
CCDS68 HSS
          

>>CCDS55347.1 LRSAM1 gene_id:90678|Hs108|chr9             (696 aa)
 initn: 3036 init1: 3036 opt: 3074  Z-score: 1439.3  bits: 276.8 E(32554): 7.5e-74
Smith-Waterman score: 4465; 96.0% identity (96.3% similar) in 723 aa overlap (1-723:1-696)

               10        20        30        40        50        60
pF1KB3 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EEQSRLEQGLSEHQRHLDAERRRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
       :::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::
CCDS55 EEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS55 MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQ------
              430       440       450       460       470          

              490       500       510       520       530       540
pF1KB3 ELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
                            :::::::::::::::::::::::::::::::::::::::
CCDS55 ---------------------EMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKS
                               480       490       500       510   

              550       560       570       580       590       600
pF1KB3 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLL
           520       530       540       550       560       570   

              610       620       630       640       650       660
pF1KB3 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQMSPGDLAKVGVSEAGLQHEILRRVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVR
           580       590       600       610       620       630   

              670       680       690       700       710       720
pF1KB3 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIY
           640       650       660       670       680       690   

          
pF1KB3 HSS
       :::
CCDS55 HSS
          




723 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:54:43 2016 done: Thu Nov  3 20:54:44 2016
 Total Scan time:  4.520 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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