GENSCAN 1.0	Date run:  3-Nov-116	Time: 20:32:19

Sequence gi568815576r:31226894_31445602 : 218709 bp : 46.88% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  21745  21876  132  0  0   71  109    77 0.634   8.26
 1.02 Intr +  26301  26413  113  2  2   80   70     6 0.330  -2.82
 1.03 Intr +  31398  31533  136  0  1   94  101   159 0.958  18.37
 1.04 Intr +  32228  32337  110  1  2  111   99    89 0.999  11.38
 1.05 Intr +  32996  33184  189  2  0   76   89   245 0.999  22.10
 1.06 Intr +  35241  35346  106  0  1   71   65   227 0.999  18.92
 1.07 Intr +  35702  35898  197  1  2   81   45   155 0.999   8.71
 1.08 Intr +  39053  39239  187  2  1   96  105   153 0.972  17.49
 1.09 Intr +  40091  40177   87  1  0   82   94   109 0.999  11.07
 1.10 Intr +  40883  41014  132  1  0   96   89   224 0.999  24.14
 1.11 Intr +  41251  41307   57  0  0   92  101    33 0.904   4.08
 1.12 Intr +  44243  44308   66  1  0   89   76    89 0.794   6.90
 1.13 Intr +  45637  45811  175  0  1  100  113   334 0.999  36.61
 1.14 Intr +  46559  46614   56  0  2   77   83    36 0.997   0.70
 1.15 Intr +  48258  48415  158  2  2   82   77   207 0.893  17.81
 1.16 Intr +  49896  50243  348  0  0   29   53   636 0.571  48.67
 1.17 Term +  51404  51548  145  2  1  131   41   196 0.942  16.58
 1.18 PlyA +  52812  52817    6                               1.05

 2.07 PlyA -  55303  55298    6                               1.05
 2.06 Term -  56395  56191  205  0  1   90   52   197 0.998  13.14
 2.05 Intr -  62500  62422   79  2  1   93   78   151 0.981  13.21
 2.04 Intr -  62806  62606  201  2  0   71   51   233 0.989  17.16
 2.03 Intr -  64191  64072  120  1  0  110   82   199 0.999  21.97
 2.02 Intr -  64403  64287  117  0  0   94  114   142 0.999  17.84
 2.01 Init -  65451  65382   70  0  1   74   78    71 0.913   6.08
 2.00 Prom -  81722  81683   40                              -3.76

 3.00 Prom +  87390  87429   40                              -6.86
 3.01 Init +  90727  90793   67  0  1   74   62   107 0.886   7.93
 3.02 Term +  94656  94783  128  1  2   22   53   115 0.584  -0.16
 3.03 PlyA +  95562  95567    6                               1.05

 4.05 PlyA -  95883  95878    6                               1.05
 4.04 Term - 100416  99998  419  1  2  100   54   386 0.943  31.84
 4.03 Intr - 108970 108799  172  1  1  105   74   167 0.703  16.52
 4.02 Intr - 116067 116004   64  2  1  108   91    35 0.812   4.52
 4.01 Init - 118709 117439 1271  2  2  111   94  1499 0.987 144.58
 4.00 Prom - 137497 137458   40                              -0.96

 5.02 PlyA - 139531 139526    6                               1.05
 5.01 Sngl - 158698 158333  366  1  0   76   41   169 0.976   7.10
 5.00 Prom - 161601 161562   40                              -5.96

 6.00 Prom + 163108 163147   40                              -4.96
 6.01 Init + 172791 172832   42  2  0   98   80    33 0.484   3.92
 6.02 Intr + 173727 173850  124  2  1   99   76    82 0.969   8.26
 6.03 Intr + 176136 176311  176  1  2   82  109   105 0.998  11.66
 6.04 Intr + 184119 184188   70  2  1   95  109    47 0.944   6.25
 6.05 Intr + 193363 193532  170  2  2   73   93   169 0.999  15.57
 6.06 Intr + 196387 196517  131  0  2  107   84   205 0.992  21.49
 6.07 Intr + 199722 199889  168  0  0   95  101   115 0.999  12.56
 6.08 Intr + 200167 200289  123  1  0   70   92    91 0.939   7.40
 6.09 Term + 206979 207078  100  0  1  102   47    50 0.800  -0.10
 6.10 PlyA + 208859 208864    6                               1.05

 7.04 PlyA - 209820 209815    6                               1.05
 7.03 Term - 213228 212987  242  1  2  110   53   217 0.829  16.59
 7.02 Intr - 213975 213811  165  1  0  120   96    10 0.674   4.93
 7.01 Intr - 216173 215910  264  0  0   78   42   259 0.251  17.78

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_1|797_aa
MVAIYSRPEAVTDGFAAEPVYLVWEEDGELLVSPGLLHLQRPVSDSGMTGSDLSFTTSQL
GTLLPTARADFDFHLKLPKIERCSECQDSLTNWYYEKDGKLYCPKDYWGKFGEFCHGCSL
LMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERL
STESVQEQLPYSVTLISMPATTEGRRGFSVSVESACSNYATTVQVKEVNRMHISPNNRNA
IHPGDRILEINGTPVRTLRVEEVEDAISQTSQTLQLLIEHDPVSQRLDQLRLEARLAPHM
QNAGHPHALSTLDTKENLEGTLRRRSLRRSNSISKSPGPSSPKEPLLFSRDISRSESLRC
SSSYSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEV
KVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSMDPFPWQQKVRFAKGIAS
GMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRAPMEKATTKKRTLRK
NDRKKRYTVVGNPYWMAPEMLNGKSYDETVDIFSFGIVLCEIIGQVYADPDCLPRTLDFG
LNVKLFWEKFVPTDCPPAFFPLAAICCRLEPESRAPPGAAGEGPGCADDEGPVRRQGKVT
IKYDPKELRKHLNLEEWILEQLTRLYDCQEEEISELEIDVDELLDMESDDAWASRVKELL
VDCYKPTEAFISGLLDKIRAMQKLSTPQKKPAFSKLEDSFEALSLYLGELGIPLPAELEE
LDHTVSMQYGLTRDSPP

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_1|2394_bp
atggtggccatctacagccggcctgaggcagtcacagacggatttgcagctgagcctgtc
tatctggtgtgggaagaagatggggagttacttgtcagtcccggcttacttcacctccag
agacctgtttcggacagtgggatgactggttcagacctcagctttaccacctcccagctg
ggtactcttctacctacagccagggcagattttgactttcacttgaaacttccaaaaatt
gaaaggtgttcagaatgccaggattccctcaccaactggtactatgagaaggatgggaag
ctctactgccccaaggactactgggggaagtttggggagttctgtcatgggtgctccctg
ctgatgacagggccttttatggtggctggggagttcaagtaccacccagagtgctttgcc
tgtatgagctgcaaggtgatcattgaggatggggatgcatatgcactggtgcagcatgcc
accctctactgtgggaagtgccacaatgaggtggtgctggcacccatgtttgagagactc
tccacagagtctgttcaggagcagctgccctactctgtcacgctcatctccatgccggcc
accactgaaggcaggcggggcttctccgtgtccgtggagagtgcctgctccaactacgcc
accactgtgcaagtgaaagaggtcaaccggatgcacatcagtcccaacaatcgaaacgcc
atccaccctggggaccgcatcctggagatcaatgggacccccgtccgcacacttcgagtg
gaggaggtggaggatgcaattagccagacgagccagacacttcagctgttgattgaacat
gaccccgtctcccaacgcctggaccagctgcggctggaggcccggctcgctcctcacatg
cagaatgccggacacccccacgccctcagcaccctggacaccaaggagaatctggagggg
acactgaggagacgttccctaaggcgcagtaacagtatctccaagtcccctggccccagc
tccccaaaggagcccctgctgttcagccgtgacatcagccgctcagaatcccttcgttgt
tccagcagctattcacagcagatcttccggccctgtgacctaatccatggggaggtcctg
gggaagggcttctttgggcaggctatcaaggtgacacacaaagccacgggcaaagtgatg
gtcatgaaagagttaattcgatgtgatgaggagacccagaaaacttttctgactgaggtg
aaagtgatgcgcagcctggaccaccccaatgtgctcaagttcattggtgtgctgtacaag
gataagaagctgaacctcctgacagagtacattgaggggggcacactgaaggactttctg
cgcagtatggatccgttcccctggcagcagaaggtcaggtttgccaaaggaatcgcctcc
ggaatggcctatttgcactctatgtgcatcatccaccgggatctgaactcgcacaactgc
ctcatcaagttggacaagactgtggtggtggcagactttgggctgtcacggctcatagtg
gaagagaggaaaagggcccccatggagaaggccaccaccaagaaacgcaccttgcgcaag
aacgaccgcaagaagcgctacacggtggtgggaaacccctactggatggcccctgagatg
ctgaacggaaagagctatgatgagacggtggatatcttctcctttgggatcgttctctgt
gagatcattgggcaggtgtatgcagatcctgactgccttccccgaacactggactttggc
ctcaacgtgaagcttttctgggagaagtttgttcccacagattgtcccccggccttcttc
ccgctggccgccatctgctgcagactggagcctgagagcagagccccccccggggccgca
ggagagggcccgggctgcgcggatgatgagggcccagtgaggcgccaagggaaggtcacc
atcaagtatgaccccaaggagctacggaagcacctcaacctagaggagtggatcctggag
cagctcacgcgcctctacgactgccaggaagaggagatctcagaactagagattgacgtg
gatgagctcctggacatggagagtgacgatgcctgggcttccagggtcaaggagctgctg
gttgactgttacaaacccacagaggccttcatctctggcctgctggacaagatccgggcc
atgcagaagctgagcacaccccagaagaaaccagcattctcgaaattggaggactccttt
gaggccctctccctgtacctgggggagctgggcatcccgctgcctgcagagctggaggag
ttggaccacactgtgagcatgcagtacggcctgacccgggactcacctccctag

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_2|263_aa
MLLAWVQAFLVSNMLLAEAYGSGGCFWDNGHLYREDQTSPAPGLRCLNWLDAQSGLASAP
VSGAGNHSYCRNPDEDPRGPWCYVSGEAGVPEKRPCEDLRCPETTSQALPAFTTEIQEAS
EGPGADEVQVFAPANALPARSEAAAVQPVIGISQRVRMNSKEKKDLGTLGYVLGITMMVI
IIAIGAGIILGYSYKRGKDLKEQHDQKVCEREMQRITLPLSAFTNPTCEIVDEKTVVVHT
SQTPVDPQEGTTPLMGQAGTPGA

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_2|792_bp
atgctgttggcctgggtacaagcattcctcgtcagcaacatgctcctagcagaagcctat
ggatctggaggctgtttctgggacaacggccacctgtaccgggaggaccagacctccccc
gcgccgggcctccgctgcctcaactggctggacgcgcagagcgggctggcctcggccccc
gtgtcgggggccggcaatcacagttactgccgaaacccggacgaggacccgcgcgggccc
tggtgctacgtcagtggcgaggccggcgtccctgagaaacggccttgcgaggacctgcgc
tgtccagagaccacctcccaggccctgccagccttcacgacagaaatccaggaagcgtct
gaagggccaggtgcagatgaggtgcaggtgttcgctcctgccaacgccctgcccgctcgg
agtgaggcggcagctgtgcagccagtgattgggatcagccagcgggtgcggatgaactcc
aaggagaaaaaggacctgggaactctgggctacgtgctgggcattaccatgatggtgatc
atcattgccatcggagctggcatcatcttgggctactcctacaagagggggaaggatttg
aaagaacagcatgatcagaaagtatgtgagagggagatgcagcgaatcactctgcccttg
tctgccttcaccaaccccacctgtgagattgtggatgagaagactgtcgtggtccacacc
agccagactccagttgaccctcaggagggcaccaccccccttatgggccaggccgggact
cctggggcctga

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_3|64_aa
MAKIQTTNADKDVEQQELSFIAAFSSSFYSLKGPFVSLGDMKRFVTSNVSCYLDLKGKFA
HVRL

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_3|195_bp
atggccaaaatccagacaacaaatgctgacaaggatgtggagcaacaggaactttcattc
attgctgcattttccagcagcttctacagtctgaaagggccctttgtctcccttggtgac
atgaagaggtttgtcacttcaaatgtcagctgttacttggacttgaagggcaagtttgcc
catgtccgcctgtga

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_4|641_aa
MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLA
ACSEYFESVFSAQLGDGGAADGGPADVGGATAAPGGGAGGSRELEMHTISSKVFGDILDF
AYTSRIVVRLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGT
SDLGFPLDMTNGAALAANSNGIAGSMQPEEEAARAAGAAIAGQASLPVLPGVDRLPMVAG
PLSPQLLTSPFPSVASSAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKV
FTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEIC
GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK
GFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVPCQVCGKYLRAA
YMADHLKKHSEGPSNFCSICNREGQKCSHQDPIESSDSYGDLSDASDLKTPEKQSANGSF
SCDMAVPKNKMESDGEKKYPCPECGSFFRSKSYLNKHIQKVHVRALGGPLGDLGPALGSP
FSPQQNMSLLESFGFQIVQSAFASSLVDPEVDQQPMGPEGK

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_4|1926_bp
atggagcgggtgaacgacgcttcgtgcggcccgtctggctgctacacataccaggtgagc
agacacagcacggagatgctgcacaacctgaaccagcagcgcaaaaacggcgggcgcttc
tgcgacgtgctcttgcgggtaggcgacgagagcttcccagcgcaccgcgccgtgctggcc
gcctgcagcgagtactttgagtcggtgttcagcgcccagttgggcgacggcggagctgcg
gacgggggtccggctgatgtagggggcgcgacggcagcaccaggcggcggggccgggggc
agccgggagctggagatgcacactatcagctccaaggtatttggggacattctggacttc
gcctacacttcccgcatcgtggtgcgcttggagagctttcccgaactcatgacggccgcc
aagttcctgctgatgaggtcggttatcgagatctgccaggaagtcatcaaacagtccaac
gtacagatcctggtaccccctgcccgcgccgatataatgctctttcgcccccctgggacc
tcggacttgggcttccctttggacatgaccaacggggcagccttggcagccaacagcaat
ggcatcgccggcagcatgcagccagaggaggaggcagctcgggcggctggtgcagccatt
gcaggccaagcctctttgcctgtgttacctggggtggaccgcttgcccatggtggctgga
cccctatccccccaactgctgacttccccattccccagtgtggcatccagtgcccctccc
ctgactggcaagcgaggccggggccgcccaaggaaggccaacctgctggactcaatgttt
gggtccccagggggcctgagggaggcaggcatccttccatgcggtctatgtggtaaggtg
ttcactgatgccaaccggctccggcagcacgaggcccagcacggtgtcaccagcctccag
ctgggctacatcgaccttcctcctccgaggctgggtgagaatgggctacccatctctgaa
gaccccgacggcccccgaaagaggagccggaccaggaagcaggtggcttgtgagatctgc
ggcaagatcttccgtgatgtgtatcatcttaaccggcacaagctgtcccactctggggag
aagccctactcctgccctgtgtgtgggttgcggttcaagagaaaagaccgcatgtcctac
catgtgcggtcccatgatgggtccgtgggcaagccttacatctgccagagctgtgggaaa
ggcttctccaggcctgatcacttgaacggacatatcaagcaggtgcacacttctgagcgg
cctcacaagtgtcagacctgcaatgcttcttttgccacccgagaccgtctgcgctcccac
ctggcctgtcatgaagacaaggtgccctgccaggtgtgtgggaagtacttgcgggcagca
tacatggcagaccacctgaagaagcacagcgaggggcccagcaacttctgcagtatctgt
aaccgagaaggccagaaatgctcacatcaggatccgattgagagctctgactcctatggt
gacctctcagatgccagcgacctgaagacgccagagaagcagagtgccaatggctctttc
tcctgcgacatggcagtccccaaaaacaaaatggagtctgatggggagaagaagtaccca
tgccctgaatgtgggagcttcttccgctctaagtcctacttgaacaaacacatccagaag
gtgcatgtccgggctctcgggggccccctgggggacctgggccctgcccttggctcacct
ttctctcctcagcagaacatgtctctcctcgagtcctttgggtttcagattgttcagtcg
gcatttgcgtcatctttagtagatcctgaggttgaccagcagcccatggggcctgaaggg
aaatga

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_5|121_aa
MDTFLDTYTFPKLKQEEIDSLNRTIMSSKMKSVINSLLTKKSPGPDEVTAEFHQMYKDGI
VLFLLKLFQKIEAEGLLPNSFCEPGIILTLKPGRDTPKIENFKPISLMNIDAEILNKILA
N

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_5|366_bp
atggatacattcctggacacatacaccttcccaaaactgaaacaagaagaaatagattcc
ctgaacagaacaataatgagctccaaaatgaaatcagtaataaatagcctactaacaaag
aaaagcccaggaccagatgaagtcacagccgaattccaccagatgtacaaagacgggata
gtactatttcttctgaaactatttcaaaaaattgaggcagagggactcctccccaactca
ttctgtgagcccggcatcatcctgacactaaaacctggcagagacacacccaaaatagaa
aacttcaagccaatatccttgatgaacatcgatgcagaaatcctcaacaaaatacttgca
aattga

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_6|367_aa
MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
VIQIVKK

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_6|1104_bp
atgagcagcaccttagctaagatcgcggagatagaagcagagatggctcggactcaaaag
aacaaggccacagcacaccacttagggctgcttaaggctcgtcttgctaagcttcgtcga
gaactcattactccaaagggtggtggtggtggaggtccaggagaaggttttgatgtggcc
aagacaggtgatgctcgaattggatttgttggttttccatctgtggggaagtcaacactg
cttagtaacctggcaggggtatattctgaggtggcagcctatgaattcactactctgacc
actgtgcctggtgtcatcagatacaaaggtgccaagatccagctcctggatctcccaggt
atcattgaaggtgccaaggatgggaaaggtagaggtcgtcaagtcattgcagtggcccga
acctgtaacttgatcttgattgttctggatgtcctgaaacctttgggacataagaagata
attgaaaatgagctggaaggctttggcattcgcttgaacagcaaaccccccaacattggc
tttaagaagaaggacaagggaggcattaatctcacagccacttgcccccagagtgagctg
gatgctgaaactgtgaagagcattctggctgaatacaagattcataatgccgatgtgact
ctacgtagtgatgctacagctgatgacctcattgatgtggtggaaggaaacagagtttat
atcccctgtatctatgtgttaaataagattgaccaaatctccattgaggaattggatatc
atctataaggtgcctcactgtgtacccatctctgcccatcaccgctggaattttgatgac
ctattggaaaagatctgggactatctgaaactagtgagaatttacaccaaacccaaaggc
cagttaccagattacacatccccagtggtgcttccttactccaggaccacagtggaggat
ttctgcatgaagattcacaaaaatcttatcaaagaatttaaatatgctctggtctggggt
ctctctgtgaaacacaatcctcagaaagtgggtaaagaccatacgttggaggatgaggat
gtcattcaaattgtgaagaagtga

>gi568815576r:31226894_31445602|GENSCAN_predicted_peptide_7|223_aa
XIRKMYESKEKSKEEPASGKAALGDSKEDTQKASEGTAELLRALLKKVCDGENMGLSADQ
PDILYKALGKTTSFSGLWFCVSEKVLCDSVLPPGMDLSHLQGISGPILGQPFYPLPAASH
PLLNPRPGTPLHLAMVQQQLQRSVLHPPGSGSHAAAVSVQTTPQNVPSRSGLPHMHSQLE
HRPSQRSSSPVGLAKWFGSDVLQQPLPSMPAKVISVDELEYRQ

>gi568815576r:31226894_31445602|GENSCAN_predicted_CDS_7|672_bp
ntgattcgtaagatgtacgagagcaaagagaaaagcaaggaggagccagcatctggaaaa
gcagctcttggtgacagtaaagaggatactcagaaggccagtgaaggtactgcagagctg
ttaagggcactgctcaagaaagtatgtgatggagaaaacatgggcctgagcgctgaccag
cctgatattctatacaaagccctgggcaagaccactagcttctctggactatggttctgt
gtcagtgagaaggttctgtgtgacagtgtgcttcctcctgggatggacttgagtcattta
cagggaatatctggccccatcctgggtcagcccttttaccctttacctgctgctagtcac
cctctcttaaaccctcgtcctggaacacctctgcatctggcaatggtgcaacagcagcta
cagcgctcagttctgcatcctccaggctctggttcccatgcagcagctgtcagcgttcag
acaacccctcagaacgtgcccagccggtcaggcctgccccacatgcactcccagctggag
catcgccccagccagaggagcagctcccctgtgggccttgccaaatggtttggctcagat
gtgctacagcaacccctgccctccatgcccgccaaagttatcagtgtagatgaattggaa
taccgacagtga