GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:54:27

Sequence gi568815581f:49476220_49679297 : 203078 bp : 47.53% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   3363   3301   63  0  0  102   99    57 0.478   7.38
 1.00 Prom -   8875   8836   40                              -1.36

 2.02 PlyA -  11861  11856    6                              -0.45
 2.01 Sngl -  15926  15732  195  2  0   95   47   224 0.860  14.16
 2.00 Prom -  16954  16915   40                              -7.36

 3.00 Prom +  17058  17097   40                              -5.66
 3.01 Init +  19226  19264   39  1  0  101   84   152 0.237  14.29
 3.02 Intr +  25844  25985  142  1  1  120   79    46 0.908   6.83
 3.03 Intr +  30080  30439  360  0  0   45   96   836 0.990  75.29
 3.04 Intr +  34193  34445  253  0  1   77   94   293 0.983  25.29
 3.05 Intr +  35673  35833  161  0  2  101   84   262 0.999  26.73
 3.06 Term +  36489  36790  302  1  2  110   52   421 0.648  36.08
 3.07 PlyA +  41845  41850    6                               1.05

 4.07 PlyA -  42913  42908    6                               1.05
 4.06 Term -  43661  43517  145  1  1   98   45    26 0.759  -3.32
 4.05 Intr -  44665  44548  118  2  1   70   96    89 0.628   7.42
 4.04 Intr -  45497  45419   79  2  1  105   43    46 0.730   0.92
 4.03 Intr -  48837  48779   59  1  2   97   60    47 0.494   1.40
 4.02 Intr -  50256  50149  108  1  0   69   28   120 0.806   4.36
 4.01 Init -  54804  54753   52  0  1   58   48    69 0.569   1.22
 4.00 Prom -  62224  62185   40                              -1.76

 5.00 Prom +  63818  63857   40                              -5.36
 5.01 Init +  72774  72835   62  2  2   84   84    55 0.332   5.42
 5.02 Intr +  78569  78749  181  2  1   87   15    92 0.212   1.67
 5.03 Intr +  78788  78964  177  1  0   52   48    88 0.159   1.32
 5.04 Intr +  91599  91640   42  2  0   77   76    39 0.356   0.04
 5.05 Intr +  92243  92476  234  1  0    1   77   174 0.746   5.49
 5.06 Intr +  94192  94505  314  0  2   52   76   177 0.832   7.88
 5.07 Intr +  95374  95425   52  1  1   85   99     3 0.829   0.01
 5.08 Intr +  95559  95650   92  2  2  102  111    27 0.895   5.19
 5.09 Intr +  99646 100054  409  1  1   12  105   146 0.388   2.97
 5.10 Term + 102377 103081  705  1  0  104   46   933 0.955  84.22
 5.11 PlyA + 104119 104124    6                               1.05

 6.10 PlyA - 107477 107472    6                               1.05
 6.09 Term - 124303 124159  145  0  1   72   44    55 0.381  -3.12
 6.08 Intr - 125788 125646  143  1  2   70   75   186 0.730  14.65
 6.07 Intr - 131153 131031  123  2  0   35  116   164 0.999  14.68
 6.06 Intr - 131710 131655   56  2  2   74   95    44 0.333   2.40
 6.05 Intr - 135238 135061  178  1  1  103   77   111 0.978  10.99
 6.04 Intr - 142889 142762  128  0  2  115  105   147 0.993  19.50
 6.03 Intr - 143166 143015  152  2  2   97   34   135 0.999   8.81
 6.02 Intr - 145893 145727  167  0  2  117   77    92 0.869   9.76
 6.01 Init - 146555 146514   42  2  0   75  111     9 0.655   2.33
 6.00 Prom - 177206 177167   40                              -2.76

 7.03 PlyA - 177241 177236    6                               1.05
 7.02 Term - 182742 182635  108  0  0   76   39    77 0.888   0.11
 7.01 Init - 186952 186890   63  1  0   59   99    79 0.807   5.26
 7.00 Prom - 192553 192514   40                              -4.46

 8.04 PlyA - 193611 193606    6                               1.05
 8.03 Term - 195152 195070   83  0  2   97   42    54 0.702  -0.44
 8.02 Intr - 201786 201714   73  0  1   82  109    54 0.949   5.88
 8.01 Init - 201946 201866   81  1  0   77   70    78 0.662   3.92

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  69010  68906  105  1  0  153   48    46 0.974   5.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_1|21_aa
MGWGLLRAVEAGSHGLTAGPQ

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_1|63_bp
atgggctggggcctcctcagagccgtggaggcagggagtcacggactgacagccgggcct
cag

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_2|64_aa
MTRSIYTKTSTTMTIIIMTTTSTITIITTTATITTTSNNTSTIMTIIIMPLPSVSLPESQ
LSPP

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_2|195_bp
atgaccagaagcatctataccaaaactagtaccactatgaccatcatcattatgaccacc
accagtaccatcaccatcatcaccaccactgccaccatcaccaccacttctaacaacacc
agcaccattatgaccatcatcattatgccactgccatcagtgtcactaccagaatcacaa
ctatcaccaccatga

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_3|418_aa
MDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLD
SVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE
AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECE
EIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQPVVTRGTTD
NLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISV
DSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQ
PEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_3|1257_bp
atggacgggccgcgcctgctgctgttgctgcttctgggggtgtcccttggaggtgccaag
gaggcatgccccacaggcctgtacacacacagcggtgagtgctgcaaagcctgcaacctg
ggcgagggtgtggcccagccttgtggagccaaccagaccgtgtgtgagccctgcctggac
agcgtgacgttctccgacgtggtgagcgcgaccgagccgtgcaagccgtgcaccgagtgc
gtggggctccagagcatgtcggcgccgtgcgtggaggccgacgacgccgtgtgccgctgc
gcctacggctactaccaggatgagacgactgggcgctgcgaggcgtgccgcgtgtgcgag
gcgggctcgggcctcgtgttctcctgccaggacaagcagaacaccgtgtgcgaggagtgc
cccgacggcacgtattccgacgaggccaaccacgtggacccgtgcctgccctgcaccgtg
tgcgaggacaccgagcgccagctccgcgagtgcacacgctgggccgacgccgagtgcgag
gagatccctggccgttggattacacggtccacacccccagagggctcggacagcacagcc
cccagcacccaggagcctgaggcacctccagaacaagacctcatagccagcacggtggca
ggtgtggtgaccacagtgatgggcagctcccagcccgtggtgacccgaggcaccaccgac
aacctcatccctgtctattgctccatcctggctgctgtggttgtgggccttgtggcctac
atagccttcaagaggtggaacagctgcaagcagaacaagcaaggagccaacagccggcca
gtgaaccagacgcccccaccagagggagaaaaactccacagcgacagtggcatctccgtg
gacagccagagcctgcatgaccagcagccccacacgcagacagcctcgggccaggccctc
aagggtgacggaggcctctacagcagcctgcccccagccaagcgggaggaggtggagaag
cttctcaacggctctgcgggggacacctggcggcacctggcgggcgagctgggctaccag
cccgagcacatagactcctttacccatgaggcctgccccgttcgcgccctgcttgcaagc
tgggccacccaggacagcgccacactggacgccctcctggccgccctgcgccgcatccag
cgagccgacctcgtggagagtctgtgcagtgagtccactgccacatccccggtgtga

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_4|186_aa
MPNTDEDVEQQELSFTAVGFCVLRDGRALSSLADTARMVRSLRVEVDLSGQEGGLAYVAL
CQAPGGTSLLQPGAGFKRLPCRILPGSLQPENFLPLRNPNCGHPKVRRVEGEPSGLLLKA
LGPGVELGLQNVDSKGFSGAQGYRLSGPPRPSPLDEEAFHIVPSLIAASLPWMKEQREAL
GEEMGP

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_4|561_bp
atgccaaacactgatgaggatgtggaacagcaggaactctcattcactgctgttgggttc
tgcgttctccgggatggccgtgctctgtcctcacttgctgacacagcccgcatggtccga
agcctccgtgtggaagtggatctgagtgggcaggagggaggcctagcctatgtggccctg
tgccaggctcctggcggcaccagcctcctgcagcctggggctggattcaaacggctcccc
tgcagaattcttcctgggtccctgcagccagaaaacttcctccctcttcggaaccccaac
tgcgggcatcccaaggtccgcagggtagaaggtgaaccatctggactactgttgaaagcc
ttaggccctggggtggagctggggcttcagaatgtggactccaagggcttctcaggagca
cagggttacaggctcagcggacccccacgcccctccccgctggatgaagaggcatttcac
attgttccaagtctcatcgctgcttcactgccctggatgaaagagcagagggaggcacta
ggggaagagatgggaccctga

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_5|755_aa
MPATQGDCSAAASGYLYDNSSMQPVLQVDQQLMTVWTPEKELPRGPIPMANRFICTQEQE
ATRGRGDRRIWGQGLFPQGPRHPGPEHLAGETFPLHTPQESEHHVTPGKPALECTSGEPY
SPRPSHYRPRANSLMGALSPNQKILDSIPPVEAQHDSDTWKSVAERVNECEYNNSRHLLS
TYCVPDAVLSSLKCGYSYPHEETEAQRGDVICQTTLWQIQDGDPGDLVPKIKTLKCSEKE
PRTTPSRQCFTGDRALSTGYVPSHTRHVLTPGGGQDDPPLQMRRLPPKKGRDCPQITLAT
ESEAPNPGCRTPAATPSPLHQSTSRSAHSQEKVPSGGSQLKGHILAEAFPDPSQPKFSMQ
IGLQSPLSTLYLHTSPGPDIKVDTWSPAHLGESGAAGAEGGAERRSGAAEPRRSWGPSRR
SGRTSGTSSGGRAARSWTRGGGRRLHSWTEGGGVGPGRPAEGRAAGRRGLEHGTARLKEQ
EGEGGLGPRKEKGRARGRERRRKMQLTRCCFVFLVQGSLYLVICGQDDGPPGSEDPERDD
HEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVK
KIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEF
HQEQQIFIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFK
VVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_5|2268_bp
atgcctgccacacagggtgactgctcggcggctgcctctggctatctttatgacaatagc
agcatgcagcctgtgctccaggtggaccagcaactgatgacagtgtggacacctgagaag
gagctgccccgtggccccatccccatggcaaacaggttcatctgtacccaggaacaggag
gccacaaggggaaggggagacaggaggatctggggccaaggtctttttccacaagggccc
aggcatcccggcccggagcacctggctggggagacctttccactccacacgccacaggag
agtgagcaccacgtgactcctgggaagcctgccctggaatgcacgtccggggagccctat
tccccccgaccttcccactacagacctcgggccaacagcctaatgggggccctcagtcct
aatcagaagatcctagattccatccccccagtagaagctcagcacgacagcgacacttgg
aagtctgtggctgaacgagtaaatgaatgcgaatataacaacagccggcacttactgagc
acctactgtgtgccagacgctgttctcagcagtctaaaatgtggatactcttatccccac
gaagaaactgaggcacagagaggtgatgtaatttgccagacgacactgtggcaaatccag
gatggggacccaggcgatctggttccaaagatcaagacactgaagtgtagcgagaaggag
ccccgcacgaccccttcccgccagtgcttcactggggacagagcactttctaccggctac
gtgccgtctcacactcgccacgtcctcaccccaggaggcgggcaggatgatccccctttg
cagatgaggaggctaccgcccaagaaggggagagactgcccccagatcaccctggccaca
gagagcgaggcccccaatccaggctgccggactccagctgccacgccctccccactccac
cagagcacaagcaggagcgctcacagccaggagaaggtcccttctggcggatcccagctg
aaaggtcacattcttgcagaggcattccctgacccctcccagcccaaattctccatgcaa
ataggactgcagtctcccctgtccacactgtacctccacaccagcccaggaccggacata
aaagtagacacttggtccccagcacatctgggcgagagcggcgccgctggagccgagggg
ggcgccgagcgcagatctggagcagcagagccacggcgcagctggggcccttcgaggcgc
tcggggcgcacatctgggacctcgagcgggggccgtgccgcgcgcagctggaccagggga
ggggggcggcggctgcacagctggaccgaagggggcggggtcggccctgggcgacccgct
gaggggagggccgcgggccgccggggactggagcatgggacggcgcgcctgaaggagcag
gaaggggaaggaggcctgggaccccgaaaagagaaggggagagcgaggggacgagagcgg
aggaggaagatgcaactgactcgctgctgcttcgtgttcctggtgcagggtagcctctat
ctggtcatctgtggccaggatgatggtcctcccggctcagaggaccctgagcgtgatgac
cacgagggccagccccggccccgggtgcctcggaagcggggccacatctcacctaagtcc
cgccccatggccaattccactctcctagggctgctggccccgcctggggaggcttggggc
attcttgggcagccccccaaccgcccgaaccacagccccccaccctcagccaaggtgaag
aaaatctttggctggggcgacttctactccaacatcaagacggtggccctgaacctgctc
gtcacagggaagattgtggaccatggcaatgggaccttcagcgtccacttccaacacaat
gccacaggccagggaaacatctccatcagcctcgtgccccccagtaaagctgtagagttc
caccaggaacagcagatcttcatcgaagccaaggcctccaaaatcttcaactgccggatg
gagtgggagaaggtagaacggggccgccggacctcgctttgcacccacgacccagccaag
atctgctcccgagaccacgctcagagctcagccacctggagctgctcccagcccttcaaa
gtcgtctgtgtctacatcgccttctacagcacggactatcggctggtccagaaggtgtgc
ccagattacaactaccatagtgataccccctactacccatctgggtga

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_6|377_aa
MSSGPVAESWCYTQVVHFLFNCFLFFYQQIKVVKFSYMWTINNFSFCREEMGEVIKSSTF
SSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAM
ESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMN
MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK
KNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNL
SVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLA
SAQCPFLGPPRKRLKQS

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_6|1134_bp
atgtcgagtggccccgtagctgagagttggtgctacacacaggttgtccacttcctattt
aattgcttcctgtttttctatcaacagatcaaggtagtgaaattctcctacatgtggacc
atcaataactttagcttttgccgggaggaaatgggtgaagtcattaaaagttctacattt
tcatcaggagcaaatgataaactgaaatggtgtttgcgagtaaaccccaaagggttagat
gaagaaagcaaagattacctgtcactttacctgttactggtcagctgtccaaagagtgaa
gttcgggcaaaattcaaattctccatcctgaatgccaagggagaagaaaccaaagctatg
gagagtcaacgggcatataggtttgtgcaaggcaaagactggggattcaagaaattcatc
cgtagagattttcttttggatgaggccaacgggcttctccctgatgacaagcttaccctc
ttctgcgaggtgagtgttgtgcaagattctgtcaacatttctggccagaataccatgaac
atggtaaaggttcctgagtgccggctggcagatgagttaggaggactgtgggagaattcc
cggttcacagactgctgcttgtgtgttgccggccaggaattccaggctcacaaggctatc
ttagcagctcgttctccggtttttagtgccatgtttgaacatgaaatggaggagagcaaa
aagaatcgagttgaaatcaatgatgtggagcctgaagtttttaaggaaatgatgtgcttc
atttacacggggaaggctccaaacctcgacaaaatggctgatgatttgctggcagctgct
gacaagtatgccctggagcgcttaaaggtcatgtgtgaggatgccctctgcagtaacctg
tccgtggagaacgctgcagaaattctcatcctggccgacctccacagtgcagatcagttg
aaaactcaggcagtggatttcatcaactatcatgcttcggatgtcttggagacctctggg
tggaagtcaatggtggtgtcacatccccacttggtggctgaggcataccgctctctggct
tcagcacagtgcccttttctgggacccccacgcaaacgcctgaagcaatcctaa

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_7|56_aa
MLARPSTSHLLCAWFLTGHGSRDKRAEKNSEVGVWEVEKVASRSLLRCGSMDEHMK

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_7|171_bp
atgcttgctcgcccgtccacctctcacctcctgtgcgcctggttcctaacaggccatggg
tcgagggataagagggctgagaaaaattcagaagttggtgtctgggaagtggagaaagtt
gcaagcagatctttgctaaggtgtgggagcatggatgagcacatgaagtag

>gi568815581f:49476220_49679297|GENSCAN_predicted_peptide_8|78_aa
MGRRPRGVGSGGTRWLRRRADAMTPRLVPDVADSMRQAQGDGDQQLSPPLSVNYEVGAKV
IAVLSFNGKNLNYFCTNL

>gi568815581f:49476220_49679297|GENSCAN_predicted_CDS_8|237_bp
atggggaggaggccgcgcggggtggggtctggcggtacgcgctggctgcgtcgacgtgct
gacgccatgacgccccggctggtcccggatgttgcggacagtatgaggcaagcgcagggg
gacggggaccagcagctgtcgccgccgctctcagtaaattatgaggttggtgcaaaagta
attgcggttttgtcatttaatggtaaaaacctcaattacttttgcaccaacctctaa