Result of FASTA (ccds) for
pF1KA0177
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0177, 1724 aa
1>>>pF1KA0177 1724 - 1724 aa - 1724 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3652+/-0.00134; mu= 9.9400+/- 0.081
mean_var=180.9078+/-35.798, 0's: 0 Z-trim(106.5): 31 B-trim: 0 in 0/51
Lambda= 0.095355
statistics sampled from 8977 (8993) to 8977 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.276), width: 16
Scan time: 6.660
The best scores are: opt bits E(32554)
CCDS9307.1 PARP4 gene_id:143|Hs108|chr13 (1724) 11343 1574.7 0
>>CCDS9307.1 PARP4 gene_id:143|Hs108|chr13 (1724 aa)
initn: 11343 init1: 11343 opt: 11343 Z-score: 8439.6 bits: 1574.7 E(32554): 0
Smith-Waterman score: 11343; 99.1% identity (99.5% similar) in 1724 aa overlap (1-1724:1-1724)
10 20 30 40 50 60
pF1KA0 MVMGIFANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDNADVLSQYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MVMGIFANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDNADVLSQYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LNSIQKNHVHIANPDFIWKSIREKRLLDVKNYDPYKPLDITPPPDQKASSSEVKTEGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LNSIQKNHVHIANPDFIWKSIREKRLLDVKNYDPYKPLDITPPPDQKASSSEVKTEGLCP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 DSATEEEDTVELTEFGMQNVEIPHLPQDFEVAKYNTLEKVGMEGGQEAVVVELQCSRDSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DSATEEEDTVELTEFGMQNVEIPHLPQDFEVAKYNTLEKVGMEGGQEAVVVELQCSRDSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 DCPFLISSHFLLDDGMETRRQFAIKKTSEDASEYFENYIEELKKQGFLLREHFTPEATQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DCPFLISSHFLLDDGMETRRQFAIKKTSEDASEYFENYIEELKKQGFLLREHFTPEATQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ASEQLQALLLEEVMNSSTLSQEVSDLVEMIWAEALGHLEHMLLKPVNRISLNDVSKAEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ASEQLQALLLEEVMNSSTLSQEVSDLVEMIWAEALGHLEHMLLKPVNRISLNDVSKAEGI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 LLLVKAALKNGETAEQLQKMMTEFYRLIPHKGTMPKEVNLGLLAKKADLCQLIRDMVNVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LLLVKAALKNGETAEQLQKMMTEFYRLIPHKGTMPKEVNLGLLAKKADLCQLIRDMVNVC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 ETNLSKPNPPSLAKYRALRCKIEHVEQNTEEFLRVRKEVLQNHHSKSPVDVLQIFRVGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ETNLSKPNPPSLAKYRALRCKIEHVEQNTEEFLRVRKEVLQNHHSKSPVDVLQIFRVGRV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 NETTEFLSKLGNVRPLLHGSPVQNIVGILCRGLLLPKVVEDRGVQRTDVGNLGSGIYFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NETTEFLSKLGNVRPLLHGSPVQNIVGILCRGLLLPKVVEDRGVQRTDVGNLGSGIYFSD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 SLSTSIKYSHPGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SLSTSIKYSHPGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 TDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFHPSDHTELEEYRPEFSNFSKVEDYQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFHPSDHTELEEYRPEFSNFSKVEDYQL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LDDKAAVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDVFTVSVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LDDKAAVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDVFTVSVGN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LPPKAKVLIKITYITELSILGTVGVFFMPATVAPWQQDKALNENLQDTVEKICIKEIGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LPPKAKVLIKITYITELSILGTVGVFFMPATVAPWQQDKALNENLQDTVEKICIKEIGTK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 QSFSLTMSIEMPYVIEFIFSDTHELKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QSFSLTMSIEMPYVIEFIFSDTHELKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 PRMWVEKHPEKESEACMLVFQPDLDVDLPDLANESEVIICLDCSSSMEGVTFLQAKEIAL
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::.:::
CCDS93 PRMWVEKHPEKESEACMLVFQPDLDVDLPDLASESEVIICLDCSSSMEGVTFLQAKQIAL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 HALSLVGEKQKVNIIQFGTGYKELFSYPKHITSNTAAAEFIMSATPTMGNTDFWKTLRYL
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS93 HALSLVGEKQKVNIIQFGTGYKELFSYPKHITSNTMAAEFIMSATPTMGNTDFWKTLRYL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 SLLYPARGSRNILLVSDGHLQDESLTLQLVKRSRPHTRLFACGIGSTANRHILRILSQCG
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS93 SLLYPARGSRNILLVSDGHLQDESLTLQLVKRSRPHTRLFACGIGSTANRHVLRILSQCG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 AGVFEYFNAKSKHSWRKQIEDQMTRLCSPSCHSVSVKWQQLNPDVPEALQAPAQVPSLFR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AGVFEYFNAKSKHSWRKQIEDQMTRLCSPSCHSVSVKWQQLNPDVPEALQAPAQVPSLFL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 NDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMIHKLAARALIRDYEDGI
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS93 NDRLLVYGFIPHCTQATLCALIQEKEFRTMVSTTELQKTTGTMIHKLAARALIRDYEDGI
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 LHENETSHEMKKQTLKSLIIKLSKENSLITQFTSFVAVEKRDENESPFPDIPKVSELIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LHENETSHEMKKQTLKSLIIKLSKENSLITQFTSFVAVEKRDENESPFPDIPKVSELIAK
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 EDVDFLPYMSWQGEPQEAVRNQSLLASSEWPELRLSKRKHRKIPFSKRKMELSQPEVSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EDVDFLPYMSWQGEPQEAVRNQSLLASSEWPELRLSKRKHRKIPFSKRKMELSQPEVSED
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 FEEDALGVLPAFTSNLERGRVEKLLDLSWTESCKPTATEPLFKKVSPWETSTSSFFPILA
::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS93 FEEDGLGVLPAFTSNLERGGVEKLLDLSWTESCKPTATEPLFKKVSPWETSTSSFFPILA
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 PAVGSYLTPTTRAHSPASLSFASYRQVASFGSAAPPRQFDASQFSQGPVPGTCADWIPQS
::::::: ::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PAVGSYLPPTARAHSPASLSFASYRQVASFGSAAPPRQFDASQFSQGPVPGTCADWIPQS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 ASCPTGPPQNPPSAPYCGIVFSGSSLSSAQSAPLQHPGGFTTRPSAGTFPELDSPQLHFS
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ASCPTGPPQNPPSSPYCGIVFSGSSLSSAQSAPLQHPGGFTTRPSAGTFPELDSPQLHFS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 LPTDPDPIRGFGSYHPSAYSPFHFQPSAASLTANLRLPMASALPEALCSQSRTTPVDLCL
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS93 LPTDPDPIRGFGSYHPSASSPFHFQPSAASLTANLRLPMASALPEALCSQSRTTPVDLCL
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 LEESVGSLEGSRCPVFAFQSSDTESDELSEVLQDSCFLQIKCDTKDDSIPCFLEVKEEDE
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS93 LEESVGSLEGSRCPVFAFQSSDTESDELSEVLQDSCFLQIKCDTKDDSILCFLEVKEEDE
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 IVCTQHWQDAVPWTELLSLQTEDGFWKLTPELGLILNLNTNGLHSFLKQKGIQSLGVKGR
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 IVCIQHWQDAVPWTELLSLQTEDGFWKLTPELGLILNLNTNGLHSFLKQKGIQSLGVKGR
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 ECLLDLIATMLVLQFIRTRLEKEGIVFKSLMKMDDPSISRNIPWAFEAIKQASEWVRRTE
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS93 ECLLDLIATMLVLQFIRTRLEKEGIVFKSLMKMDDASISRNIPWAFEAIKQASEWVRRTE
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720
pF1KA0 GQYPSICPRLELGNDWDSATKQLLGLQPISTVSPLHRVLHYSQG
::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GQYPSICPRLELGNDWDSATKQLLGLQPISTVSPLHRVLHYSQG
1690 1700 1710 1720
1724 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:31:55 2016 done: Thu Nov 3 19:31:56 2016
Total Scan time: 6.660 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]