Result of FASTA (ccds) for pF1KSDA1950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1950, 498 aa
  1>>>pF1KSDA1950 498 - 498 aa - 498 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0103+/-0.000718; mu= 16.0577+/- 0.043
 mean_var=101.6974+/-20.364, 0's: 0 Z-trim(112.4): 10  B-trim: 0 in 0/53
 Lambda= 0.127180
 statistics sampled from 13176 (13184) to 13176 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.405), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7         ( 498) 3447 642.7 2.7e-184
CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7         ( 297) 1373 262.0 6.5e-70
CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17         ( 360)  728 143.7 3.2e-34
CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17         ( 302)  475 97.2 2.6e-20


>>CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7              (498 aa)
 initn: 3447 init1: 3447 opt: 3447  Z-score: 3422.2  bits: 642.7 E(32554): 2.7e-184
Smith-Waterman score: 3447; 100.0% identity (100.0% similar) in 498 aa overlap (1-498:1-498)

               10        20        30        40        50        60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLPPGGPAEAIKEHERWLAMCIQALQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLPPGGPAEAIKEHERWLAMCIQALQR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPSSRDSVGLRKVLGDKFSSLRRKLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPSSRDSVGLRKVLGDKFSSLRRKLSA
              430       440       450       460       470       480

              490        
pF1KSD RKLARAESAPRPWDGEES
       ::::::::::::::::::
CCDS34 RKLARAESAPRPWDGEES
              490        

>>CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7              (297 aa)
 initn: 1406 init1: 1361 opt: 1373  Z-score: 1368.7  bits: 262.0 E(32554): 6.5e-70
Smith-Waterman score: 1381; 73.3% identity (78.7% similar) in 315 aa overlap (1-307:1-297)

               10        20        30        40        50        60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
              130       140       150       160       170       180

              190       200        210            220       230    
pF1KSD SDLYPHEAWSFTFSKFLPGH-EVGVCSFARFSGEFP-----KSGPSAPDLALVEAAADGP
       :::::::::::::::::::: .:         ::.:     ..: . :  .   ::: ::
CCDS64 SDLYPHEAWSFTFSKFLPGHGHVPRALPPSGPGELPLAPLPHAGCAQPGRG--PAAAPGP
              190       200       210       220       230          

          240         250       260       270       280       290  
pF1KSD EAPLQDRGWALC--FSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRP
        . : ... : :  :.:   :        :  :: . :.    .    ::.:.       
CCDS64 LSHLPEEA-AACPGFQAHREVP-------ETLHLDSGGGGDVAQPGGGGAVSVGGH----
      240        250              260       270       280          

            300       310       320       330       340       350  
pF1KSD LDLCPICLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGM
           : : :.: :::                                             
CCDS64 ----PACQRRLGHVL                                             
            290                                                    

>>CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17              (360 aa)
 initn: 654 init1: 300 opt: 728  Z-score: 727.9  bits: 143.7 E(32554): 3.2e-34
Smith-Waterman score: 728; 36.9% identity (68.6% similar) in 309 aa overlap (15-321:9-314)

               10        20        30        40        50        60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
                     ..:: ::.: . .: . :   .. .:. .. ::..:   ::  . .
CCDS11       MQIIRHSEQTLKTALISKNPVLVSQY-EKLNAGEQRLMNEAFQPASDLFGPITL
                     10        20         30        40        50   

               70        80        90       100        110         
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPI-DLSEEPVGSS-LLHQLCS
       ..  ::. :.::::.::. : ..  .. :   .. ::.: : .:..  . :   .. : .
CCDS11 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTG
            60        70        80        90       100       110   

      120       130       140       150       160       170        
pF1KSD CTEAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGL
         .:.: ::::: :  : ..  ::: : ....  ::.:.  ::.:::..:: ::.::.:.
CCDS11 YCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGI
           120       130       140       150       160       170   

      180       190       200       210       220       230        
pF1KSD TLSDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPL
       :. ::::...:.:.:..      ::. ::::....: .   ..    : .....  .  .
CCDS11 TMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSS--DYSI
           180       190       200       210       220         230 

      240       250       260       270       280       290        
pF1KSD QDRGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPI
        :  .   .... ... ::.  ::. :..:: .:.:: :::::.  :.:: ::::.::::
CCDS11 FDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPI
             240       250       260       270       280       290 

      300       310       320       330       340       350        
pF1KSD CLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDS
       ::.::: ..:: ..:::. :  :                                     
CCDS11 CLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWI
             300       310       320       330       340       350 

>>CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17              (302 aa)
 initn: 651 init1: 296 opt: 475  Z-score: 478.1  bits: 97.2 E(32554): 2.6e-20
Smith-Waterman score: 521; 31.3% identity (58.0% similar) in 307 aa overlap (15-321:9-256)

               10        20        30        40        50        60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
                     ..:: ::.: . .: . :   .. .:. .. ::..:   ::  . .
CCDS32       MQIIRHSEQTLKTALISKNPVLVSQY-EKLNAGEQRLMNEAFQPASDLFGPITL
                     10        20         30        40        50   

               70        80        90       100       110       120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
       ..  ::. :.::::.::. : ..  .. :   .. ::.: :       :.          
CCDS32 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSI-------GD----------
            60        70        80        90                       

              130       140       150       160       170       180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
                                              ::.:::..:: ::.::.:.:.
CCDS32 ---------------------------------------ILKFLKKKKPEDAFCVVGITM
                                               100       110       

              190       200       210       220       230       240
pF1KSD SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
        ::::...:.:.:..      ::. ::::....: .   ..    : .....  .  . :
CCDS32 IDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSS--DYSIFD
       120       130       140       150       160         170     

              250       260       270       280       290       300
pF1KSD RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
         .   .... ... ::.  ::. :..:: .:.:: :::::.  :.:: ::::.::::::
CCDS32 NYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICL
         180       190       200       210       220       230     

              310       320       330       340       350       360
pF1KSD RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
       .::: ..:: ..:::. :  :                                       
CCDS32 HKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIK
         240       250       260       270       280       290     




498 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:13:45 2016 done: Thu Nov  3 19:13:46 2016
 Total Scan time:  3.790 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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