GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:08:35

Sequence gi568815597f:52656457_52921626 : 265170 bp : 43.82% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  11013  11123  111  2  0  -48   92   201 0.836   7.48
 1.02 Term +  11242  11307   66  0  0   74   44    64 0.630  -1.46
 1.03 PlyA +  12642  12647    6                               1.05

 2.04 PlyA -  13593  13588    6                               1.05
 2.03 Term -  31712  31264  449  0  2  122   35   369 0.840  30.38
 2.02 Intr -  36411  36271  141  1  0   98  116   220 0.989  26.12
 2.01 Init -  41870  41765  106  2  1  102  101   196 0.764  22.68
 2.00 Prom -  57095  57056   40                              -3.86

 3.03 PlyA -  58953  58948    6                               1.05
 3.02 Term -  70832  70727  106  1  1   67   49   166 0.800   8.48
 3.01 Init - 100156 100059   98  1  2   77  113    43 0.681   5.48
 3.00 Prom - 104627 104588   40                              -4.96

 4.00 Prom + 108011 108050   40                              -4.96
 4.01 Init + 109234 109282   49  0  1   65   56    30 0.231  -3.38
 4.02 Intr + 114564 115318  755  1  2  116   72   551 0.028  47.48
 4.03 Intr + 123397 123537  141  0  0   62  116    73 0.218   8.05
 4.04 Intr + 128421 128597  177  2  0   55  115    64 0.135   5.92
 4.05 Intr + 140278 140328   51  0  0   91  110    32 0.961   4.80
 4.06 Intr + 145363 145524  162  0  0   98   50    33 0.585   0.67
 4.07 Intr + 145636 145683   48  0  0   98   91     5 0.593   0.68
 4.08 Intr + 157080 157221  142  2  1  121   51    55 0.596   5.03
 4.09 Intr + 186518 186685  168  0  0   45   92    81 0.005   4.12
 4.10 Intr + 200542 200740  199  2  1   53   13   145 0.080   1.91
 4.11 Intr + 201086 201293  208  2  1   78    9   137 0.168   3.88
 4.12 Intr + 204275 204391  117  1  0   87   76    18 0.166   1.16
 4.13 Intr + 211271 211321   51  1  0   74  100    27 0.253   1.60
 4.14 Intr + 221226 221387  162  2  0  120   59    66 0.783   7.07
 4.15 Intr + 225015 225129  115  2  1   60   69    98 0.408   5.12
 4.16 Term + 236326 236501  176  2  2   67   46    67 0.055  -1.68
 4.17 PlyA + 238091 238096    6                               1.05

 5.11 PlyA - 238517 238512    6                               1.05
 5.10 Term - 240141 240064   78  0  0   99   46    82 0.986   2.86
 5.09 Intr - 241028 240981   48  2  0   76   91    44 0.656   2.38
 5.08 Intr - 242768 242718   51  2  0  118   78    87 0.997   9.80
 5.07 Intr - 248377 248190  188  2  2   86   64   246 0.996  21.41
 5.06 Intr - 250155 250063   93  1  0   85   84    62 0.825   5.44
 5.05 Intr - 251498 251412   87  0  0   82   85   130 0.881  12.04
 5.04 Intr - 255197 255110   88  2  1   53   96    79 0.992   4.74
 5.03 Intr - 255334 255267   68  2  2   84   94    66 0.957   5.42
 5.02 Intr - 260032 260009   24  2  0  131   65    24 0.450   2.40
 5.01 Init - 261103 261088   16  1  1   60   93    -5 0.491  -2.44
 5.00 Prom - 261474 261435   40                              -3.16

 6.00 Prom + 261897 261936   40                             -11.82
 6.01 Init + 263995 264137  143  0  2   64   80   224 0.872  18.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 114564 115330  767  1  2  116   42   541 0.920  45.88
S.002 Sngl - 116192 115848  345  2  0  101   37   187 0.912  10.94
S.003 Intr + 139836 139935  100  0  1  131   77    31 0.879   6.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_1|58_aa
IITITITITITTTTIIIIVIVIIMLLLAHWSLTEPCENPLYHVASISKKQAKNRTYSI

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_1|177_bp
atcatcaccatcaccatcaccatcaccatcaccaccaccaccatcatcatcattgtcatc
gtcatcattatgttgcttttagctcactggagcctcacagaaccctgtgagaatccactc
tatcacgtggcctctatttcaaagaagcaggccaaaaacaggacatacagcatttga

>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_2|231_aa
MAGMVDFQDEEQVKSFLENMEVECNYHCYHEKDPDGCYRLVDYLEGIRKNFDEAAKVLKF
NCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPGKKSIAACHNVGLLAHD
GQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACD
LGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLHKEQQKGVQPLTFG

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_2|696_bp
atggccggcatggtggacttccaggatgaggagcaggtcaagtcctttttggagaacatg
gaggtggagtgcaactaccactgctaccacgagaaggacccggacggttgctatcggctg
gtggactatttggaagggatccggaagaattttgatgaggctgccaaggtgttgaagttt
aactgtgaagagaaccagcacagtgatagctgctacaaactgggggcctactatgtgact
ggaaaaggtggtctgacccaggacctgaaagctgccgccaggtgctttttgatggcgtgt
gagaagcctggaaagaagtcaatagcagcatgtcacaacgttggcctcctggcacatgat
ggacaggttaatgaggatggccagcctgacttgggaaaggccagggactactacacaagg
gcctgtgatggtggctatacttccagttgcttcaacctcagtgccatgttcctgcagggt
gccccaggctttcccaaggacatggacctggcatgtaaatactccatgaaagcctgtgac
ctgggtcatatctgggcctgtgccaatgccagtcgcatgtacaagctgggggatggtgtt
gataaggatgaggccaaggccgaggtgctaaaaaatcgagcccagcagctacacaaagaa
cagcagaaaggtgtccaacccttaacatttgggtaa

>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_3|67_aa
MVRSSRSATSCGNTPGSCRHNVPSCLAEQNFSSSREATVLKLFLLRPLKPVEGNGDSCDG
EPSEDIR

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_3|204_bp
atggtccgaagcagtcgatcagccacctcctgtgggaatactccaggttcctgcagacac
aatgttccatcttgtctggctgaacagaacttctcaagctcccgggaagcaacagtcctc
aaattgttcctgcttagacccctgaagcccgtagaaggaaatggggacagctgcgacggc
gaaccgagcgaggacatccgataa

>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_4|906_aa
MESCNVAQAGLKLLASGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVE
LDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSI
TNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQI
LDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQ
QRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLF
SLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTH
LLLKAMEHFPNHQQLSTEQTAQLGTELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNL
TDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFI
DHISSLLHSVEVEVSYFAAGIIAHLISRGEHRGAGGDADLGATSSSGERGESPGTLPRHL
LGSVARAGLRSRCRAPSRRRRRCGGKLTDRTASIFRGNQMKLKLVNIQKAKISTAAFIKA
FCRHKLIELNATAVHADLPVPDIISGLCSNRQLKSDLAFHLLQQKDILPNVVSLDISGGN
CITDEAVELFIRLRPAMQFVGLLATDAGSSDFFTTKQGLRVAGGASMSQISEALSRYRNR
SCFVKEALHRLFTETFSMELSPEQTAQLEELFMAVKELLAIVKQKTTENLDDVTFLFTLK
ALWNLTDGSPAACKHFIENQGLQIFIQVLENNIAEVRELSSKLVTEDVLKHINSLLCSRE
MEVSYFAAASKYCKMLVEEEGLQLLCDIQEHSEATPKAQQIAASILDDFRMHFMNYQRPT
LCQMPF

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_4|2721_bp
atggagtcttgcaatgttgcccaggctggtctcaaactcctggcctcgggtctattgaat
gatggaactgtgggtatttttaggggcaaccagatgcgcttaaagcgagcctgcattcgc
aaagcaaagatctctgctgttgctttccggaaagctttctgccaccacaagttagtggaa
cttgatgccacaggtgtgaatgctgatatcacgattacagacattatcagtgggcttggc
agtaacaaatggatccagcagaatctccagtgcctggtgctgaattcattaactctctcc
ctcgaggatccttacgagcgctgcttcagccggctttctggccttcgagctttaagcatc
acgaatgttctcttttacaatgaagacctggctgaagttgcctcattgccaagattagag
agcttggatatttctaacacctcaatcacagacatcactgctctactggcctgcaaagac
cgactcaagtctctaaccatgcaccacttgaaatgtttaaaaatgacaactacccagata
ctggatgtagttcgggaactcaaacatctgaatcatcttgatatctcagatgataaacag
tttacatcagacatagctcttcgcttactagaacaaaaagacatcctacctaaccttgtt
tctctggatgtttctgggagaaagcacgtgacagataaagccgttgaagcctttatacaa
caacgtccaagcatgcaatttgtaggtttgctggctactgatgctggttactctgaattc
ctcacaggcgaaggacatttgaaggtgtctggggaagccaatgaaactcagattgcagaa
gcactgaagcgttacagtgaacgggcattctttgttcgggaagctctatttcatcttttt
agtctgactcatgtgatggaaaaaacaaagccagaaattttaaagcttgtggttactggg
atgagaaaccaccctatgaatttgccagtgcaactggctgcaagcgcctgtgtatttaac
ttaaccaagcaggatcttgctgcagggatgcctgtccgactcctggctgatgtgacccat
ttgctgctcaaagccatggaacattttcccaatcaccagcagctttctacagaacaaact
gcacagcttggtactgagctcttcattgtcaggcaacttcttcaaatagtgaagcagaaa
accaatcaaaattcagtggacactacattgaaatttactttgagtgcactttggaacctc
acagatgaatctccaaccacttgtagacactttattgaaaaccaagggttagaactcttc
atgagggttctagagtctttcccaactgagtcatccattcagcagaaagttctaggactt
ttgaacaatatagctgaagtacaagaattacattctgaattaatgtggaaagattttata
gaccacatcagtagtctcctacacagtgtggaagtggaagtcagttactttgcagctgga
attattgcccatttaatatccagaggtgagcaccggggtgcgggcggcgacgcggacctc
ggcgccacgtccagctccggcgagcgcggcgagtctcctgggacgctgccgaggcacttg
ctggggagtgtggcccgcgcggggctgcggtctagatgccgagccccttccaggcgcagg
cgtcgctgcggaggcaagctgactgacagaacagccagcattttccgaggcaaccaaatg
aaactgaagctggtcaatatccaaaaagctaaaatctctacagctgcattcataaaagcc
ttctgccgtcataagctcattgaactgaatgctactgcagtgcacgctgacctcccagtt
ccagacatcataagtggactctgcagcaataggcaactcaaatcagacctagcttttcat
ttgctacagcagaaggatatcctgcccaatgttgtgtcattggatatttctgggggcaat
tgcatcactgatgaagctgtagaactgtttatacgactgcggcctgccatgcaatttgtg
ggactattggccacggatgctggctcttctgacttctttactacaaagcaaggcttgagg
gttgctggaggagccagtatgagtcagatttcagaagcactgagccgatacaggaacaga
tcatgttttgtgaaggaagccctccacaggctgttcacagagacattttcaatggagctc
tcacctgagcaaacggcacagcttgaagagcttttcatggcagttaaggaacttctagca
atagtaaaacaaaagactactgagaatttagatgatgtcaccttcttgtttactttgaaa
gcactttggaatcttacagatgggtctccagctgcctgcaagcacttcattgaaaatcaa
ggattgcaaatcttcatccaagtcttggagaacaacatagcagaagtcagagagctctct
tccaagctggtgaccgaagatgtgctgaagcatatcaacagtttactctgtagcagggaa
atggaagtcagctattttgctgcagccagcaaatactgcaaaatgttagttgaagaagaa
ggattgcagcttttgtgtgatatccaggagcacagtgaggcaacccccaaagcacagcag
attgcagcctccattctggatgacttcagaatgcatttcatgaattatcagaggcccact
ctgtgtcaaatgcccttctga

>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_5|246_aa
MGSFEDQEIEGQKGITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVK
GVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALAC
DLRVAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARA
LAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRT
PKFVGK

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_5|741_bp
atgggctcatttgaagatcaggaaattgaaggccagaaggggatcactgagattctgatg
aacagaccttctgcccgcaatgccttggggaatgtcttcgtcagtgagctgctggaaact
ctggcccagctgcgggaggaccggcaagtgcgtgtcctgctcttcagaagtggagtgaag
ggcgtgttctgtgcaggtgcagacctgaaggagcgggaacagatgagtgaagcagaggtg
ggggtgtttgtccagcgactccggggcctgatgaatgacatcgcagccttccctgcaccc
accattgcggctatggatgggtttgccttgggcggaggcctagagcttgccctggcctgt
gacctccgagtggcaggagggactcagaggctgccccgttgtctgggggtggccctggcg
aaggagctcatcttcacgggccgacgactgagtggaactgaggcccacgtactggggctg
gtgaatcacgctgtggcccagaacgaggagggggacgccgcctaccagcgggcacgagca
ctggcccaggagatcctgccccaggcccccattgccgtgcggctgggcaaagtagccatt
gaccgaggaacggaggtggacattgcatctgggatggccattgaagggatgtgctatgcc
cagaatattccaacccgggaccggctagagggcatggcagccttcagggagaagcggact
cccaaatttgttggcaaatga

>gi568815597f:52656457_52921626|GENSCAN_predicted_peptide_6|48_aa
MQAKEMDEEDKAFKQKQKEEQKKLEELKWKATGKGPLATSGIKKSGKN

>gi568815597f:52656457_52921626|GENSCAN_predicted_CDS_6|144_bp
atgcaggccaaggagatggacgaggaagataaggctttcaagcagaaacaaaaagaggag
cagaagaaactcgaggagctaaaatggaaggccacggggaaggggcccttggccacaagt
ggaattaagaaatctggcaaaaan