GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:01:44

Sequence gi568815590r:27187553_27411235 : 223683 bp : 44.60% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -    659    654    6                               1.05
 1.10 Term -  14186  14156   31  1  1  107   47    49 0.110   0.03
 1.09 Intr -  21658  21540  119  1  2   77   79    14 0.031  -1.34
 1.08 Intr -  30128  30024  105  2  0   57   84    63 0.234   3.21
 1.07 Intr -  32462  32333  130  1  1   23   91    67 0.198   1.20
 1.06 Intr -  49353  49298   56  0  2  158  103   131 0.981  19.38
 1.05 Intr -  52610  52419  192  2  0   84  100   260 0.895  26.49
 1.04 Intr -  53710  53502  209  2  2   78   94   290 0.906  27.40
 1.03 Intr -  54205  54125   81  2  0   99   53    46 0.609   1.81
 1.02 Intr -  54940  54845   96  2  0   68   86   137 0.936  11.48
 1.01 Init -  57093  56880  214  0  1   77   42   118 0.549   5.01
 1.00 Prom -  74606  74567   40                              -1.76

 2.07 PlyA -  76085  76080    6                               1.05
 2.06 Term - 100575  99998  578  1  2   79   49   794 0.998  69.23
 2.05 Intr - 101728 101610  119  0  2  102   93   194 0.988  21.41
 2.04 Intr - 102626 102604   23  2  2  102  131    36 0.998   5.64
 2.03 Intr - 106758 106528  231  0  0  155   91   370 0.999  41.97
 2.02 Intr - 111007 110912   96  1  0   81   99   185 0.085  19.11
 2.01 Init - 123683 123249  435  2  0   84   94   712 0.995  67.57
 2.00 Prom - 125616 125577   40                              -4.26

 3.06 PlyA - 125879 125874    6                               1.05
 3.05 Term - 129148 129005  144  1  0   52   43   106 0.618   0.41
 3.04 Intr - 134889 134815   75  0  0   64   94    80 0.813   5.91
 3.03 Intr - 136753 136673   81  1  0   98   75    22 0.371   1.73
 3.02 Intr - 139439 139358   82  1  1   94   93     8 0.326   1.54
 3.01 Init - 143462 143329  134  2  2   51  116    74 0.765   6.11
 3.00 Prom - 155992 155953   40                              -2.46

 4.06 PlyA - 157686 157681    6                               1.05
 4.05 Term - 170068 169834  235  0  1  125   55    80 0.479   4.19
 4.04 Intr - 177303 177144  160  1  1  -26   81   126 0.396  -0.45
 4.03 Intr - 181782 181683  100  0  1   79  121     3 0.013   2.38
 4.02 Intr - 197722 197682   41  2  2  103   92    14 0.019   1.24
 4.01 Init - 207020 206942   79  2  1   42   93    60 0.476   3.12
 4.00 Prom - 207534 207495   40                              -4.26

 5.00 Prom + 208711 208750   40                              -8.36
 5.01 Init + 210033 210236  204  2  0   51  114   263 0.929  24.05
 5.02 Term + 212215 212247   33  0  0   98   55    14 0.359  -3.31
 5.03 PlyA + 212495 212500    6                               1.05

 6.03 PlyA - 212547 212542    6                              -3.24
 6.02 Term - 214414 214299  116  2  2   55   43   221 0.978  13.03
 6.01 Init - 219122 218987  136  2  1   30  109   118 0.808   8.40

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 110992 110912   81  1  0   94   99   184 0.911  21.07
S.002 Term - 183820 183690  131  2  2   60   48   134 0.829   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_1|410_aa
MPSCQLLSDSNSSFKALLRCYRHQGHLPGSLANAGGVEPYFCVPQQFLMLISGGVEPYLC
VPQQFLTLISGAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKD
SADWRERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRR
RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA
QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASREQYIIQSGQKTTYNGVG
RRWAWNEWTIGKDTERQTEKSGLNLQSSIPFAHTLPTIVFLLMLIFQIPVTLDTVSLPSN
LTFGLDNPLETISPYPSFARRGNSCLEREHDSSKIIQITQWVYQLTIIAE

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_1|1233_bp
atgccctcctgccagctcctgtctgattctaactcatccttcaaggcactgctcaggtgc
taccgacaccagggacacctcccaggctccctggcaaatgctgggggtgtggagccctat
ttctgtgtcccacagcaattcctcatgctgatttctggtggtgtggagccctatctctgt
gtcccacagcaattcctcacgctgatttctggtgcctacaaagagaagatgaaggagctc
ccgctggtgtccttgttctgctcctgcttcctggccgatcccctgaataagtcgtcctac
aaatatgaaggctggtgtgggagacagtgtaggaggaaggatgaaagccagcggaaagac
agtgctgactggagagaaagaagagctcaggcagacacggtggacctgaattggtgcgtc
atttccgacatggaagtcatcgagctgaacaaatgcacctcgggccaatcctttgaagtc
atcctgaagccaccctcctttgatggggttcccgagttcaacgcctccctgccaaggcgg
cgagacccatccctggaagagatccagaagaaactagaagcggctgaggagcgaaggaag
taccaggaagcggagctcctgaaacacctagcagagaaacgggaacatgagagagaggtg
atccaaaaggccattgaggaaaacaacaacttcatcaagatggctaaggaaaaactggcc
cagaagatggaatccaacaaggagaacagggaggcccacctcgccgccatgttggaacgg
ctgcaagagaaggacaagcacgccgaggaggtgcggaaaaacaaggagctgaaggaagag
gcctccagggaacagtacattatccagagtggccagaagaccacgtacaatggggttggt
agaagatgggcatggaatgaatggacaattgggaaggacactgaacgtcagactgagaaa
tctggacttaatctacagtcatccattccatttgctcacacattgccaaccatcgtcttt
ctcctgatgctgatctttcagatcccagtgactcttgacactgtatccttgccttccaac
ctgacttttgggctggacaatcccttagagaccattagtccatatccttcatttgccaga
cgaggaaattcatgcttagagagagaacatgactcttccaagatcatacagatcacacag
tgggtttaccaactaaccatcattgctgaatga

>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_2|493_aa
MERSPDVSPGPSRSFKEELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVC
KDRASPADLRTNHTLNNLVEKLLREEAEGARWTSYRFSRVCRLHRGQLSLFCLEDKELLC
CSCQADPRHQGHRVQPVKDTAHDFRAKCRNMEHALREKAKAFWAMRRSYEAIAKHNQVEA
AWLEGRIRQEFDKLREFLRVEEQAILDAMAEETRQKQLLADEKMKQLTEETEVLAHEIER
LQMEMKEDDVSFLMKHKSRKRRLFCTMEPEPVQPGMLIDVCKYLGSLQYRVWKKMLASVE
SVPFSFDPNTAAGWLSVSDDLTSVTNHGYRVQVENPERFSSAPCLLGSRVFSQGSHAWEV
ALGGLQSWRVGVVRVRQDSGAEGHSHSCYHDTRSGFWYVCRTQGVEGDHCVTSDPATSPL
VLAIPRRLRVELECEEGELSFYDAERHCHLYTFHARFGEVRPYFYLGGARGAGPPEPLRI
CPLHISVKEELDG

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_2|1482_bp
atggagcggagtcccgacgtgtcccccgggccttcccgctccttcaaggaggagttgctc
tgcgccgtctgctacgaccccttccgcgacgcagtcactctgcgctgcggccacaacttc
tgccgcgggtgcgtgagccgctgctgggaggtgcaggtgtcgcccacctgcccagtgtgc
aaagaccgcgcgtcacccgccgacctgcgcaccaaccacaccctcaacaacctggtggag
aagctgctgcgcgaggaggccgagggcgcgcgctggaccagctaccgcttctcgcgtgtc
tgccgcctgcaccgcggacagctcagcctcttctgcctcgaggacaaggagctgctgtgc
tgctcctgccaggccgacccccgacaccaggggcaccgcgtgcagccggtgaaggacact
gcccacgactttcgggccaagtgcaggaacatggagcatgcactgcgggagaaggccaag
gccttctgggccatgcggcgctcctatgaggccatcgccaagcacaatcaggtggaggct
gcatggctggaaggccggatccggcaggagtttgataagcttcgcgagttcttgagagtg
gaggagcaggccattctggatgccatggccgaggagacaaggcagaagcaacttctggcc
gacgagaagatgaagcagctcacagaggagacggaggtgctggcacatgagatcgagcgg
ctgcagatggagatgaaggaggacgacgtttcttttctcatgaaacacaagagccgaaaa
cgccgactcttctgcaccatggagccagagccagtccagcccggcatgcttatcgatgtc
tgcaagtacctgggctccctgcagtaccgcgtctggaagaagatgcttgcatctgtggaa
tctgtacccttcagctttgaccccaacaccgcagctggctggctctccgtgtctgacgac
ctcaccagcgtcaccaaccatggctaccgcgtgcaggtggagaacccggaacgcttctcc
tcggcgccctgcctgctgggctcccgtgtcttctcacagggctcgcacgcctgggaggtg
gcccttggggggctgcagagctggagggtgggcgtggtacgtgtgcgccaggactcgggc
gctgagggccactcacacagctgctaccacgacacacgctcgggcttctggtatgtctgc
cgcacgcagggcgtggagggggaccactgcgtgacctcggacccagccacgtcgcccctg
gtcctggccatcccacgccgcctgcgtgtggagctggagtgtgaggagggcgagctgtct
ttctatgacgcggagcgccactgccacctgtacaccttccacgcccgctttggggaggtt
cgcccctacttctacctggggggtgcacggggcgccgggcctccagagcctttgcgcatc
tgccccttgcacatcagtgtcaaggaagaactggatggctga

>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_3|171_aa
MLANTAKLGNGKACLPQVLAIADLGFSHTNWLPHKSSNHLSAGKSPLVQGWIVPCTFPWQ
PSLNHPVSHTALICHVPSTQHFGGNLGDYTAVSRSEGGQLVFTTVYEVASPIPGLQKGKG
SLDKASVKVHRTTVISSKIYLVTLMNKVDYVCSARMPVSEDAAASPVADFI

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_3|516_bp
atgttagcgaacacagccaagctaggaaacgggaaggcttgcctcccgcaggtattggcc
attgctgatcttggttttagtcacactaactggctgcctcataaaagcagcaaccacctt
agtgctgggaaaagccctctagtgcagggttggatagtaccctgcaccttcccctggcag
ccctccctcaaccacccggtatcccacactgccctgatttgtcacgttcccagcactcag
cattttggaggtaatcttggtgactacacagcggtcagcaggtcagaaggtggtcagctt
gtcttcacaaccgtctatgaagttgctagtcctattcctggtttgcagaaaggaaaagga
agcttggataaggcctcagtaaaggtacatcggactacagtgatttcctcaaagatttac
ttggtaactctgatgaacaaggtcgattatgtctgcagtgccaggatgcctgtttccgaa
gatgctgctgccagccctgtggctgactttatttag

>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_4|204_aa
MSCAITFTHTHSQIPRATFGSASSIHSLHAKGLTSEKQQQIETPGSPRPSTGPGHLRSPY
MPVKGSCDYKRVEDGGDNEEKGVDEGRCPKVESTGIDSQLEEKRILPTIFSRQLDVSEAT
HQVRMRRVDKGERRKPSFTTRDPISFKAGGWEMMLLIAVKGDGRHGVAPCTGDLQENEFP
ILFCCQLLVTSLSYKIMRRPLEMM

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_4|615_bp
atgtcctgtgccatcacattcactcacactcactcgcagattccgagagcaactttcggt
tctgcaagctccattcactctctccatgccaaagggctcacttctgagaaacagcagcag
atagaaacccctggatcccccaggcccagcacagggcctggtcatctcaggtccccctac
atgccagtgaagggatcctgtgattataagagggtagaagatgggggcgataatgaggaa
aaaggagtagatgaaggaagatgtcccaaggtggaatccacaggaattgacagccagtta
gaagaaaagcgaatattgcctacaatcttctcccgtcaattggacgtcagtgaggccact
catcaagtcaggatgagaagagttgacaaaggagagagaagaaagcccagtttcacaaca
agagacccaatttccttcaaagctggtggttgggaaatgatgctcctgatagcggttaag
ggagatggcaggcacggggtggccccctgcactggagatttgcaagaaaatgaatttccc
attctcttctgctgtcagttgctggttacctccctatcctacaagatcatgagaagaccc
ctggaaatgatgtga

>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_5|78_aa
MSGVSEPLSRVKLGTLRRPEGPAEPMVVVPVDVEKEDVRILKVCFYSNSFNPGKNFKLVK
CTVQTEIRAKCHLLIANS

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_5|237_bp
atgtctggggtgtccgagcccctgagtcgagtaaagttgggcacgttacgccggcctgaa
ggccctgcagagcccatggtggtggtaccagtagatgtggaaaaggaggacgtgcgtatc
ctcaaggtctgcttctatagcaacagcttcaatcctgggaaaaacttcaaactggtcaaa
tgcactgtccagacggagatccgggcaaaatgccacctgcttattgcaaatagctga

>gi568815590r:27187553_27411235|GENSCAN_predicted_peptide_6|83_aa
MPSPSPNHRENHDNVPTIKGPYTFPAANFQEVWNGSWGEELTHTFVLAAITTTAIIITTI
TTTVIITIIITITITIPMAIILI

>gi568815590r:27187553_27411235|GENSCAN_predicted_CDS_6|252_bp
atgccaagccccagccccaatcatcgtgagaaccatgacaatgtgccaactataaagggc
ccctacacatttcccgctgccaacttccaggaggtgtggaacggctcctggggagaagag
ctgactcacacattcgtgctagctgcaatcaccactactgccatcatcatcactaccatc
accactactgtcatcatcaccatcatcatcaccatcaccatcactatccccatggctata
atcttaatttaa