GENSCAN 1.0	Date run:  3-Nov-116	Time: 18:30:40

Sequence gi568815583f:80350882_80693695 : 342814 bp : 44.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  12490  12648  159  0  0  115   59    56 0.847   5.46
 1.02 Intr +  13799  13924  126  1  0   70   99    63 0.963   6.48
 1.03 Intr +  14478  14654  177  2  0   72   61    63 0.721   2.12
 1.04 Term +  44487  44606  120  2  0   97   46    69 0.265   2.07
 1.05 PlyA +  45270  45275    6                               1.05

 2.11 PlyA -  51243  51238    6                               1.05
 2.10 Term -  54065  53820  246  2  0   68   44   165 0.170   5.89
 2.09 Intr -  54528  54425  104  1  2  138   91   -30 0.129   2.19
 2.08 Intr -  56497  56353  145  1  1   44   11   121 0.011  -0.14
 2.07 Intr -  68623  68587   37  0  1  138   81    19 0.089   4.46
 2.06 Intr -  74270  74206   65  2  2   84   80    67 0.496   3.02
 2.05 Intr -  80978  80886   93  2  0   82   70    58 0.737   3.56
 2.04 Intr -  81332  81143  190  1  1   68   61    91 0.754   3.99
 2.03 Intr -  85506  85313  194  0  2  132   52    75 0.939   6.59
 2.02 Intr -  85788  85684  105  0  0   68   26    92 0.679   1.41
 2.01 Init -  86516  86463   54  2  0   81   72    16 0.553   0.58
 2.00 Prom -  88914  88875   40                              -1.86

 3.00 Prom +  95948  95987   40                              -3.86
 3.01 Init + 100001 100113  113  1  2   80  102   108 0.457  11.22
 3.02 Term + 100735 100954  220  1  1   69   41   258 0.998  15.71
 3.03 PlyA + 101522 101527    6                               1.05

 4.00 Prom + 104858 104897   40                              -5.36
 4.01 Init + 105226 105347  122  0  2   55   85    71 0.596   3.16
 4.02 Intr + 107048 107095   48  2  0   83  115    87 0.899   8.70
 4.03 Intr + 111339 111504  166  0  1   50   22   126 0.521   2.16
 4.04 Intr + 113889 113930   42  2  0   58   87    61 0.049   1.44
 4.05 Intr + 117731 117851  121  1  1  110   40    37 0.177   1.17
 4.06 Intr + 119339 119550  212  0  2  -13   80   293 0.289  17.03
 4.07 Intr + 124129 124342  214  0  1   85   82   190 0.411  16.39
 4.08 Intr + 132731 132898  168  0  0   66   39    98 0.011   2.62
 4.09 Term + 151362 151468  107  1  2   71   54   159 0.240   9.37
 4.10 PlyA + 152556 152561    6                               1.05

 5.05 PlyA - 152665 152660    6                               1.05
 5.04 Term - 154937 154832  106  1  1   87   39    70 0.108  -0.12
 5.03 Intr - 157428 157250  179  0  2    5   76   199 0.466   9.12
 5.02 Intr - 162527 162458   70  1  1   66   80    84 0.697   4.58
 5.01 Init - 163581 163574    8  0  2   99   80    11 0.708   1.12
 5.00 Prom - 167261 167222   40                              -1.56

 6.00 Prom + 170465 170504   40                              -6.66
 6.01 Init + 176806 176857   52  0  1   56   95    40 0.046   2.82
 6.02 Intr + 200318 200394   77  0  2  100  110    74 0.306  10.03
 6.03 Intr + 201759 201893  135  2  0   99  109   141 0.999  18.06
 6.04 Intr + 204184 204258   75  0  0   65   88    34 0.623   0.81
 6.05 Intr + 208476 208577  102  2  0   46   81    64 0.464   1.87
 6.06 Intr + 210188 210316  129  1  0   80   92    30 0.732   3.49
 6.07 Intr + 212207 212358  152  1  2  111   70   297 0.933  29.16
 6.08 Intr + 223267 223339   73  1  1  146  109    59 0.998  13.21
 6.09 Intr + 224106 224229  124  2  1   40  103    90 0.957   5.86
 6.10 Intr + 225985 226084  100  2  1   86   91    41 0.471   3.37
 6.11 Intr + 227605 227709  105  1  0   42   46   131 0.340   3.63
 6.12 Intr + 229530 229668  139  0  1   96   80     8 0.468   1.27
 6.13 Intr + 229886 230045  160  1  1   99   59    55 0.539   3.26
 6.14 Intr + 231098 231126   29  0  2   45   99    23 0.392  -3.07
 6.15 Intr + 232327 232434  108  0  0   61   80   107 0.973   7.68
 6.16 Intr + 240687 240776   90  2  0   45   89   110 0.736   6.99
 6.17 Term + 242719 242817   99  0  0  145   37   108 0.957   9.53
 6.18 PlyA + 247027 247032    6                               1.05

 7.09 PlyA - 248270 248265    6                               1.05
 7.08 Term - 260853 260779   75  0  0  107   48    55 0.527   1.24
 7.07 Intr - 264411 264262  150  0  0   77  103    19 0.208   2.66
 7.06 Intr - 270160 270036  125  2  2   82   32   102 0.137   4.30
 7.05 Intr - 280685 280542  144  0  0  100   28    69 0.143   2.35
 7.04 Intr - 287994 287873  122  2  2  111   38    41 0.706   1.54
 7.03 Intr - 289862 289819   44  2  2   96   76    41 0.751   0.74
 7.02 Intr - 290309 290208  102  2  0   79  116    29 0.732   5.17
 7.01 Init - 318311 318231   81  2  0   87  110    -9 0.095   2.17

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 138934 138925   10  1  1  111  109    18 0.808   6.24
S.002 Init + 309384 309433   50  2  2   79   75    25 0.830   0.72
S.003 Term + 309827 309923   97  2  1  111   33    91 0.894   3.34


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_1|193_aa
MALLLLTVLGPWNCGHPGLSKIGNQQKFKSEVKAQMAEYEKNLFENKNHFCGGRSWQEGK
AQKSLDLIKQQGQPQWNWRLSEVTQQRKTKRMFSLCWDYRCEPLCPATFQVFEAELSSQS
IGPPPSTDHTRSLVSPVKPLEEEPNACTLKPAGQLIESWFPVQVLDELATQGNGEFLEQS
AVTAAIARTTSGF

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_1|582_bp
atggccctgctgctcctcactgttctgggcccatggaactgtggacacccaggactctca
aaaattgggaatcagcagaagtttaaaagtgaagtaaaagcacaaatggcagaatatgaa
aaaaatttatttgaaaacaaaaaccatttctgtggaggtaggtcctggcaagaagggaaa
gcccaaaagagcctggacctgataaaacaacagggccagcctcaatggaattggagacta
agtgaagtaactcagcaacggaaaaccaaacgtatgttctcactctgctgggattacagg
tgtgagccactatgcccggccaccttccaagtctttgaagctgaactttcaagccagagt
attggtcctcctcccagtacagaccacaccaggtccctggtcagccccgtcaagcctctt
gaggaggagcctaatgcctgcacacttaagcctgctgggcagttaatagaaagttggttt
ccagtgcaagtattagatgaattagcaacacagggaaatggtgagtttctggagcagtca
gcagttactgcagccatagctagaactacttctgggttctga

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_2|410_aa
MRPQKRREDKNGIREMEWTQREQLPSFLVPGPTQVMKQTQPPPGYQMVNHLEDVGGTPRG
QEAVSIHLSYGITTPFSDGHAFLVAFFEIEWAPQNGVPRSLGDCSDPSCFTCQHPETQDA
GEGLVRVHYFIKVHTLQGAVVEWETDAAFLPIDSRPLIFAAELSGDSSINSPWRKTFTRI
MEVLREGFGHQGVFEEALEEQSPPSAPKGRELKQGYCEQLFDKTKTSVPRLGHRSPRESQ
CDSGKKSNMSNMSVKTPTSPVTNKTLENPHYTSQKSVIVNGSAVVKWSAGKKGTRTQQPA
VPTAASAQHPKVCTSLDVHVSLLPHPAHQRGALHQPGLADAVMPQKPGPEEKNAWDGEGK
GGYFQNFGGSRACPSGSRGCEASVRPPAGPDRRLPGTGWAAIGMQMPLWC

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_2|1233_bp
atgaggccacaaaagaggagagaagacaaaaatgggataagagagatggagtggacacaa
cgagagcagctaccatccttcctggtgccagggcccacacaagtcatgaagcaaacacag
cccccgccaggataccagatggttaatcatctggaggatgtaggaggaactccccgaggt
caggaagcagtgtctattcatttgtcgtatggaatcaccacacccttcagtgatggccat
gctttccttgtcgccttctttgagattgagtgggccccacagaacggcgttcccagaagc
cttggtgactgctcagatcccagctgctttacctgccagcatcctgaaactcaagacgca
ggtgaagggctggtgcgggtgcactatttcatcaaagtccacaccctccagggagcagta
gttgaatgggaaacagatgctgcatttttacctattgacagtaggcccttaatctttgca
gctgagctttcaggagacagcagcatcaattctccgtggagaaaaactttcacaaggatc
atggaggtcctgagagagggcttcggccaccagggggtctttgaggaagcactggaggaa
caaagcccaccctcagcaccaaaagggagagagctgaaacaaggctactgtgagcagctc
ttcgataaaacaaaaaccagtgtgccaagacttggccacagatcacccagggaaagccag
tgtgacagtggaaagaagagtaacatgagtaacatgagcgtgaagaccccaacatcaccg
gtcaccaacaagaccctagagaatccccactacacatcacagaagagtgtcattgtaaat
ggttctgctgttgtgaagtggtcagctgggaaaaaaggaacaaggacccagcaacctgcc
gtgcccacagcagcctctgcacaacacccaaaagtttgtactagcttagatgttcacgtt
tctcttctcccacaccctgctcatcagcgcggagccctccaccagccaggactggctgac
gccgtgatgccacaaaagccgggaccggaagagaaaaatgcgtgggatggggaaggcaaa
ggcggttattttcagaacttcgggggctcccgggcctgcccttcgggttcccgaggatgc
gaggccagcgtccggccgcccgcgggtccggaccggcgcctgcccgggaccggatgggca
gcgattgggatgcagatgccgctctggtgctga

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_3|110_aa
MASDIPGSVTLPVAPMAATGQVRMAGAMPARGGKRRSGPEKPTNQPTNQPTNQPTTHQPS
NQPTNQPTNQPINQPTNQPINQPTNYPPTIQPTKILQEKHDGHFQTQDIT

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_3|333_bp
atggcttcagacatacctggatctgtgacgttgcccgttgcccccatggcggccaccgga
caggtgaggatggcgggggccatgcctgcccgtggaggaaagcggcgttccggacctgaa
aaaccaaccaaccaaccaactaaccaaccaaccaaccaaccaactacccaccaaccatcc
aaccaaccaaccaatcaaccaactaaccaaccaatcaaccaaccaaccaaccaaccaatc
aaccaaccaaccaactaccccccaaccatccaaccaaccaaaatcctgcaggaaaaacat
gatggacattttcagactcaagatatcacctag

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_4|399_aa
MQNIDSFDSFRKSCIQLPLVHNIGNSKAAARCLVSQTTLQRMDFDDEDGEGPSKFSREFQ
DTFSYRQLGSAATSTWRHLKYCFIRGITNIPELSSTESKLYTVLIVCLTYVNHAWERLAM
KDVPGKHPQPQDHLLLFAISFSIVVFAFHLPFEAFNHTLRFISTMQENHSEIERRRRNKM
TQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTGNKSTDGAYKPSFLTEQELK
HLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEKLREQL
CTSENSMTGSAPSLQVQQAASSTVEQESEELVACSSCHPGRTQTRAGRKPVIHDAARVSV
HLLEHGAVIDARKFPDVAVGMAGCPGQEESVLRIEEDTS

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_4|1200_bp
atgcagaatattgatagctttgattcgtttagaaagtcttgcattcagctcccacttgtc
cacaacatcggcaactctaaagctgctgcccggtgcctggtttcccaaactaccttgcag
agaatggacttcgatgatgaagatggtgaaggccccagtaaattttcaagggagttccag
gacaccttctcataccggcagctggggtcagctgccaccagtacatggaggcatcttaaa
tattgtttcataaggggcattactaacatcccagagctgtcatcaacagagtcaaaatta
tacaccgtgctcatcgtgtgccttacgtatgtgaatcatgcctgggagcgactggccatg
aaggatgttcctggaaagcaccctcagccccaggaccacctcctcctcttcgctatatcg
ttctccattgtggtttttgcttttcacctgccttttgaagcatttaatcatactctgcgt
ttcatttccactatgcaagagaatcatagtgaaatcgaaaggcgcagacggaacaagatg
actcagtacatcacggagctctccgacatggtccccacatgcagcgcactggctcggaag
ccagacaagctcaccatcctccgcatggccgtctcgcacatgaagtccatgaggggtaca
gggaacaagtccaccgatggcgcgtacaagccttccttcctcacagagcaggaactgaag
catctcatccttgaagcagctgatggatttctgtttgtggtggctgctgagacagggcga
gtgatttatgtgtctgactccgtcacccctgttctgaaccagccccagtcagagtggttt
gggagcacactgtatgaacaggtgcatcctgatgacgtggagaagctgagagagcaactg
tgcacctcagaaaactcaatgacagggtccgcaccaagtttgcaggttcagcaggcggca
tcctccactgtggaacaggagagcgaggagctggtagcatgctcatcctgtcaccctgga
aggacccagactagagcaggaagaaagccagttatacatgatgctgcaagagtcagcgtg
cacctcctggaacatggagcagttatagatgcccgcaagttcccagatgtggcagtgggc
atggctggctgccccggacaggaggaaagcgtgctcagaattgaggaggacacgtcctga

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_5|120_aa
MVSTRDNQTAGSLLMAEESVGMRDKQKKEQTNHLMACCSPKTDLILQMKDRREPMHILMD
DCCPSFLTVPVFRSKIRPKRERRTVTSKSKFFFLSKAALSPQSPIFVIGTTTTQLLKLEI

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_5|363_bp
atggtcagcactagggacaaccagacagctggaagtctgctgatggcagaggagagcgtg
gggatgagagataaacagaaaaaggagcaaaccaaccacctgatggcctgctgctccccc
aaaacagacctcatcctgcagatgaaagaccgccgcgagcccatgcacatcctcatggat
gactgctgcccttctttcttgaccgtcccagtcttcaggtccaagatccggcctaagaga
gagagaaggacagttacgtccaaaagcaaattcttcttcctgtccaaagctgccctttct
ccacagtcccctatctttgtcattggcaccaccactacccagttgctcaaactagaaatt
tag

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_6|582_aa
MRIGIVKKSAQFAQLVTGMTIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMNGMSVPT
EFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQGTVGSGQ
AATGTSWSTPHLGPVLVFFGLRPLTAKVLRIEMGYSQVTKMSLSPCCMQSGQDDRHHRRI
DHKCGGCEEWVVKLKGQVLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNV
KQLQQQQAELEVHQRDGLSSYDLSQVPVPNLPAGVHEAGKSVEKADAIFSQERDPRFAEM
FAGISASEKKMMSSASAAGTQQIYSQGSPFPSGHSGKAFSSSRGDHAEEEDTITDDLWEK
SEAADRAQGRQSSVSSSVVHVPGVNDIQSSSSTGQNMSQISRQLNQSQVAWTGSRPPFPG
QPCPEAAGRERLGRLRHLIKNEPLTTLDLWLPLRQEGMKPPTLVTSPDPHSHCEGQAHKR
PVVLARTVVMSDGVKRGFGAELTRNRGKVLEHPTVAVTRQLKVDKVAGSSKGGPRKSGRS
GKASTMASRADMLPMPGDPTQGTGNYNIEDFADLGMFPPFSE

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_6|1749_bp
atgaggattggaatagtgaagaaatcagcccagtttgcacagctggtaactggaatgacc
atacctgaagaagacgctgatgtgggacaaggcagtaaatattgcctcgtggcaattggg
agactccaggtgaccagctctcctgtatgcatggacatgaatgggatgtcggtgcccaca
gagttcttatcccggcataactccgatggaatcatcacatttgtggatccaagatgtatc
agtgtgattggctaccaaccccaggatcttctgggaaaggacattttggaattctgccac
cctgaggatcaaagccatctgcgtgagagcttccagcagggcactgtgggcagcggccaa
gcagccacagggacatcctggagcacaccgcacctcggccccgtgcttgtgttctttggt
ctccggccactgacagccaaggtcttgaggatagagatggggtattcacaggtgaccaag
atgtccctgtccccatgctgcatgcagtctggccaagacgacagacaccaccgaagaata
gaccacaagtgtggcgggtgtgaggaatgggtggttaagctgaaaggccaagtcctgtcg
gtcatgtatcgatttcgcaccaagaaccgggagtggatgttgatccgcaccagcagcttc
acattccagaatccctattctgatgagattgagtacatcatctgcaccaacaccaacgtc
aagcaacttcagcaacagcaggcagaattggaagtgcaccagagagatggattgtcatcg
tatgacttatcccaggtccccgtccccaacctaccagccggtgttcatgaggccgggaag
tccgtggaaaaggcggatgcaatcttctcccaggaaagagatcctcggtttgctgaaatg
tttgcaggaattagtgcatcggagaagaagatgatgagctcagcctctgcagcaggaacc
cagcagatctactcccaaggaagcccatttccctctggacactccgggaaggccttcagc
agcagccgtggggaccatgctgaggaggaggacaccatcactgatgacctttgggagaag
agtgaagctgcagacagggctcagggcagacagtccagcgtgagctcttcagtggttcat
gtgcctggagtgaatgatattcagtcctcttcttccacgggccagaacatgtcccaaatc
tcccggcagctaaaccagagtcaggtggcatggacagggagtcgtccgccctttccggga
cagccatgccctgaggcagctggcagggaaaggttgggcaggttgagacacctcatcaag
aatgagcccctcactactctggacctctggctgcccctgcgccaggagggcatgaaacca
ccaacccttgtgacatccccagaccctcatagtcactgtgagggacaagctcataagaga
cccgtggtcctggccaggacagtcgttatgtctgatggggtcaagagaggcttcggagca
gagctaacacgcaaccgtggcaaggtcttggagcatcccactgtggccgtgacgagacag
ctgaaagtggacaaagtagcgggcagttccaagggcggccctcggaagtctggtcgcagt
ggcaaagccagcaccatggccagcagagcggacatgctgcccatgccaggagatccaacc
caggggactggcaactataacatcgaagactttgccgacctgggcatgtttccaccgttt
tctgagtag

>gi568815583f:80350882_80693695|GENSCAN_predicted_peptide_7|280_aa
MGHLLQGTQQGESGSSCLRPEVPDGLQIIVTKEVFIEFNTFLIPSFWLLCLQEANRKMEA
KASFTKGSSCHSGLPRLLLRMTFRRFYLISVISVDDSLEQSQTGSQDRPDSLTRKMRPLE
PTYHLGFEEESSDHVGSTLLMRGPSSTIESFSLTCNVAILSCILCQAFQGMTPQSEDTNG
CDEVIATELGTAMSRGVELLEKKPRREAGPFLPAPGMRCCEACTCTMFPGSPPPTAHTMN
PNVVLAMRRDRRRSRHAQLGSCRHQVILLLVLPKKPVSKT

>gi568815583f:80350882_80693695|GENSCAN_predicted_CDS_7|843_bp
atggggcatttattgcagggcacccagcaaggagaatcaggcagctcatgcttaagacct
gaagtccctgatggattacagataattgttactaaagaagtattcattgaattcaacact
ttcttgattccctctttctggcttctctgtctgcaagaagcaaacaggaaaatggaagcc
aaggctagcttcaccaagggcagcagctgtcactctggcctgccaaggcttctgctcaga
atgacttttagaagattctacctgatatctgtgatatctgtggatgattcactcgagcag
agtcagactggctcccaagaccgtccagactccctgaccaggaaaatgcgacccctggaa
ccaacttaccacctgggctttgaggaggaatccagtgaccatgtggggtccacccttctg
atgaggggccccagcagcactatcgagtcattttcacttacttgcaatgtggccatactc
tcatgtatcctgtgccaagccttccaaggaatgacaccacaaagtgaagacacaaatgga
tgtgacgaagtgattgccactgagcttggcacagccatgagtagaggagtggagctgctg
gagaagaaaccacgcagggaggcaggcccttttctgccggcccctggcatgaggtgttgt
gaagcgtgcacttgcaccatgtttcctggcagccctccacccactgcccacactatgaat
ccgaatgtggtcctggcgatgcggagagatagaaggagaagccggcatgctcagctcggt
tcctgccgccatcaggtcatcttgctgcttgttctgcccaagaagcctgtttctaaaacc
tag