Result of FASTA (omim) for pF1KB9025
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9025, 434 aa
  1>>>pF1KB9025 434 - 434 aa - 434 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0778+/-0.00041; mu= 18.8806+/- 0.026
 mean_var=64.8119+/-13.019, 0's: 0 Z-trim(110.9): 23  B-trim: 4 in 1/50
 Lambda= 0.159311
 statistics sampled from 19399 (19408) to 19399 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.228), width:  16
 Scan time:  8.600

The best scores are:                                      opt bits E(85289)
NP_886552 (OMIM: 612907,616084,616959) CCA tRNA nu ( 434) 2887 672.6 5.4e-193
XP_011532079 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
XP_011532080 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
XP_011532078 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
NP_001289875 (OMIM: 612907,616084,616959) CCA tRNA ( 414) 1660 390.6 4.1e-108


>>NP_886552 (OMIM: 612907,616084,616959) CCA tRNA nucleo  (434 aa)
 initn: 2887 init1: 2887 opt: 2887  Z-score: 3585.9  bits: 672.6 E(85289): 5.4e-193
Smith-Waterman score: 2887; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              370       380       390       400       410       420

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
NP_886 QMEKDELLSYIKKT
              430    

>>XP_011532079 (OMIM: 612907,616084,616959) PREDICTED: C  (434 aa)
 initn: 2878 init1: 2878 opt: 2878  Z-score: 3574.7  bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              370       380       390       400       410       420

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
XP_011 QMEKDELLSYIKKT
              430    

>>XP_011532080 (OMIM: 612907,616084,616959) PREDICTED: C  (434 aa)
 initn: 2878 init1: 2878 opt: 2878  Z-score: 3574.7  bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              370       380       390       400       410       420

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
XP_011 QMEKDELLSYIKKT
              430    

>>XP_011532078 (OMIM: 612907,616084,616959) PREDICTED: C  (434 aa)
 initn: 2878 init1: 2878 opt: 2878  Z-score: 3574.7  bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              370       380       390       400       410       420

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
XP_011 QMEKDELLSYIKKT
              430    

>>NP_001289875 (OMIM: 612907,616084,616959) CCA tRNA nuc  (414 aa)
 initn: 1660 init1: 1660 opt: 1660  Z-score: 2062.0  bits: 390.6 E(85289): 4.1e-108
Smith-Waterman score: 2698; 95.4% identity (95.4% similar) in 434 aa overlap (1-434:1-414)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::                    ::::::::::::::::::::::::::::::::
NP_001 ELKKILVG--------------------LPANASLEEFDKVSKNVDGFSPKPVTLLASLF
                                  250       260       270       280

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              350       360       370       380       390       400

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
NP_001 QMEKDELLSYIKKT
              410    




434 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:17:47 2016 done: Thu Nov  3 18:17:48 2016
 Total Scan time:  8.600 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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