GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:53:01

Sequence gi568815594f:89794972_90053415 : 258444 bp : 35.91% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    223    218    6                               1.05
 1.04 Term -  17959  17858  102  1  0   99   35    82 0.765   1.30
 1.03 Intr -  27417  27275  143  1  2   59   86   176 0.931  13.65
 1.02 Intr -  33213  33172   42  1  0   72  115    31 0.547   1.49
 1.01 Init -  40696  40576  121  1  1   78   82   135 0.569  12.30
 1.00 Prom -  41017  40978   40                              -6.65

 2.00 Prom +  48615  48654   40                              -6.05
 2.01 Init +  56353  56529  177  0  0   83   32   144 0.116   7.61
 2.02 Intr +  61293  61573  281  2  2   38   65   151 0.097   3.15
 2.03 Intr +  62024  62161  138  2  0   47   36   123 0.456   1.66
 2.04 Intr +  80879  81046  168  2  0    7   45   159 0.010   1.64
 2.05 Intr + 100036 100623  588  1  0   57   69   412 0.001  27.01
 2.06 Intr + 114305 114378   74  2  2   60   75    40 0.052  -1.97
 2.07 Intr + 128197 128301  105  2  0  125   40   108 0.615   8.97
 2.08 Intr + 132824 132997  174  0  0   70   93   134 0.639  11.09
 2.09 Intr + 139839 141827 1989  1  0  101  107  1147 0.199 104.27
 2.10 Intr + 156634 156780  147  2  0   94   98   137 0.995  14.59
 2.11 Term + 158026 158447  422  2  2  106   38   199 0.998  11.17
 2.12 PlyA + 158868 158873    6                               1.05

 3.03 PlyA - 158912 158907    6                               1.05
 3.02 Term - 167404 167342   63  1  0  117   37    91 0.902   3.81
 3.01 Init - 169873 169790   84  1  0   72  115    29 0.921   4.87
 3.00 Prom - 169963 169924   40                              -5.85

 4.06 PlyA - 170626 170621    6                               1.05
 4.05 Term - 173452 173096  357  1  0   45   43   255 0.876  10.23
 4.04 Intr - 173879 173691  189  2  0  123   33    75 0.414   4.36
 4.03 Intr - 174829 174624  206  2  2  112  -24   164 0.276   5.60
 4.02 Intr - 175029 174960   70  0  1   18  119    50 0.014  -1.06
 4.01 Init - 176674 176564  111  1  0   87   76    66 0.015   5.56
 4.00 Prom - 185127 185088   40                              -3.85

 5.06 PlyA - 185357 185352    6                               1.05
 5.05 Term - 196865 196690  176  0  2   37   55   125 0.375   1.04
 5.04 Intr - 206485 206186  300  2  0  -15   73   231 0.038   7.08
 5.03 Intr - 238342 238226  117  2  0   41   86    87 0.025   3.32
 5.02 Intr - 247307 247262   46  2  1   64   95    40 0.001  -0.64
 5.01 Init - 257356 257183  174  1  0   15   66   141 0.410   3.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  95065  95166  102  0  0   95   55   120 0.872   6.70
S.002 Init - 176711 176564  148  2  1   24   76   175 0.980  10.20
S.003 Term - 228678 228589   90  0  0   80   49   127 0.946   4.74
S.004 Init - 229641 229621   21  0  0  109   83     8 0.860   2.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:89794972_90053415|GENSCAN_predicted_peptide_1|135_aa
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKAASYQGVRPKSFLLSDNT
KPHESPLRGRTRDKL

>gi568815594f:89794972_90053415|GENSCAN_predicted_CDS_1|408_bp
atggatgtattcatgaaaggactttcaaaggccaaggagggagttgtggctgctgctgag
aaaaccaaacagggtgtggcagaagcagcaggaaagacaaaagagggtgttctctatgta
ggctccaaaaccaaggagggagtggtgcatggtgtggcaacagtggctgagaagaccaaa
gagcaagtgacaaatgttggaggagcagtggtgacgggtgtgacagcagtagcccagaag
acagtggagggagcagggagcattgcagcagccactggctttgtcaaaaaggaccagttg
ggcaaggctgcatcctaccagggagtaagacccaagtccttcctgctttcagacaacacc
aagcctcatgagtccccactcagaggaaggaccagagacaaactctaa

>gi568815594f:89794972_90053415|GENSCAN_predicted_peptide_2|1420_aa
MAEGKEEQVTSYVDGSRQGERAFAGKLPFLKQSDIMRLTLYHESSTRKTRPHDSTISHQW
VQDSGCSTSSMTRRTARHCLTQEVQGVREFPFIAKQSCDRRHLKNRVTPTQILRFSNGLS
KRHTRKLYPAPGSEGPMPTEPCSLLAQQSEIELQTDSGVDLQQTPTDLQLRILTVKRITN
KQKGHPHQNYKATVTKMARYYWQMRQMKIVKLDELDYRYFASTATDKETTPPSTKKTQCP
KPKFHNVQFQVQMYYLWSGGIGLNNSKHSWTIPEDGNSQKTMPSASVPPNKIQSLQILPT
TRVMSAEIATTPEARTSEDSLLKSTLPPSETSAPAEGVRNQTLTSTEKAEGVVKLQNLTL
PTNASIKFNPGAESVVLSNSTLKFLQSFARKSNEQATSLNTVGGTGGIGGVGGTGGVGNR
APRETYLSRGDSSSSQRTDYQKSNFETTRGKNWCAYVHTRLSPTVILDNQVTYVPAQEQQ
SLIHTNQAESHTAVGRGVAEQQQQQGCGDPEVMQKMTDQVNYQAMKLTLLQKKIDNISLT
VNDVRNTYSSLEGKVSEDKSREFQSLLKGLKSKSINVLIRDIVREQFKIFQNDMQETVAQ
LFKTVSSLSEDLESTRQIIQKVNESVVSIAAQQKFVLVQENRPTLTDIVELRNHIVNVRQ
EMTLTCEKPIKELEVKQTHLEGALEQEHSRSILYYESLNKTLSKLKEVHEQLLSTEQVSD
QKNAPAAESVSNNVTEYMSTLHENIKKQSLMMLQMFEDLHIQESKINNLTVSLEMEKESL
RGECEDMLSKCRNDFKFQLKDTEENLHVLNQTLAEVLFPMDNKMDKMSEQLNDLTYDMEI
LQPLLEQGASLRQTMTYEQPKEAIVIRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQG
RDDALERRINEYALEMEDGLNKTMTIINNAIDFIQDNYALKETLSTIKDNSEIHHKCTSD
METILTFIPQFHRLNDSIQTLVNDNQRYNFVLQVAKTLAGIPRDEKLNQSNFQKMYQMFN
ETTSQVRKYQQNMSHLEEKLLLTTKISKNFETRLQDIESKVTQTLIPYYISVKKGSVVTN
ERDQALQLQVLNSRFKALEAKSIHLSINFFSLNKTLHEVLTMCHNASTSVSELNATIPKW
IKHSLPDIQLLQKGLTEFVEPIIQIKTQAALSNLTCCIDRSLPGSLANVVKSQKQVKSLP
KKINALKKPTVNLTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCINGRTSFTCACR
HPFTGDNCTIKLVEENALAPDFSKGSYRYAPMVAFFASHTYGMTIPGPILFNNLDVNYGA
SYTPRTGKFRIPYLGVYVFKYTIESFSAHISGFLVVDGIDKLAFESENINSEIHCDRVLT
GDALLELNYGQEVWLRLAKGTIPAKFPPVTTFSGYLLYRT

>gi568815594f:89794972_90053415|GENSCAN_predicted_CDS_2|4263_bp
atggcagaaggcaaggaggagcaagtcacgtcttatgtggatggcagcaggcaaggggag
agagcttttgcagggaaactcccatttttaaaacaatcagatatcatgagacttactctc
tatcatgagagcagcacaagaaagacccgaccccatgattcaactatctcccaccagtgg
gtgcaggacagtgggtgcagcacatcgagcatgacccgaagaacagcgaggcattgcctc
acccaggaagtgcaaggggtgagggaattccctttcatagccaagcaaagctgtgacaga
cggcacctgaaaaatcgggtcactcccacccaaatactgcgcttttccaatggtcttagc
aagcggcacaccaggaaattatatcctgcgcctggctcagagggtcccatgcccacggag
ccttgctcattgctagcacagcagtctgagattgaactgcaaacagattctggagtggac
ctccagcaaactccaacagacctgcagctgaggatcctgactgtcaaaaggataactaac
aaacagaaaggacatccacaccaaaactacaaggctacagtaaccaaaatggcacggtat
tactggcagatgaggcaaatgaagattgtaaagttagatgaacttgattatcgatacttt
gccagtactgctacagacaaagagaccacacctccatctaccaaaaaaactcagtgtcct
aaaccaaagtttcataatgttcaattccaagttcaaatgtattatttatggagtgggggc
attgggcttaacaacagtaagcattcttggactatacctgaggatgggaactctcagaag
actatgccttctgcttcagttcctccaaataaaatacaaagtttgcaaatactgccaacc
actcgggtcatgtcggcggagatagctacaactccagaggcaagaacttctgaagacagt
cttcttaaatcaacactgcctccctcagaaacaagtgcacctgctgagggtgtgagaaat
caaactctcacatccacagagaaagcagaaggagtggtcaagttacagaatcttaccctc
ccaaccaacgctagcatcaagttcaatcctggagcagaatcagtggtcctttccaattct
acactgaaatttcttcagagctttgccagaaagtcaaatgaacaagcaacttctctaaac
acagttggaggcactggaggcattggaggcgttggaggcactggaggcgtgggaaatcga
gccccacgggaaacatacctcagccggggtgacagcagttccagccaaagaactgactac
caaaaatcaaatttcgaaacaactagaggaaagaattggtgtgcttatgtacataccagg
ttatctcccacagtgatattggacaaccaggtcacttatgtcccagcccaggaacagcaa
agtttgatacacaccaaccaggctgaaagtcatacagctgttggcagaggagtagctgag
cagcagcagcagcaaggctgtggtgacccagaagtgatgcaaaaaatgactgatcaggtg
aactaccaggcaatgaaactgactcttctgcagaagaagattgacaatatttctttgact
gtgaatgatgtaaggaacacttactcctccctagaaggaaaagtcagcgaagataaaagc
agagaatttcaatctcttctaaaaggtctaaaatccaaaagcattaatgtactgataaga
gacatagtaagagaacaatttaaaatttttcaaaatgacatgcaagagactgtagcacag
ctcttcaagactgtatcaagtctatcagaggacctcgaaagcaccaggcaaataattcaa
aaagttaatgaatctgtggtttcaatagcagcccagcaaaagtttgttttggtgcaagag
aatcggcccactttgactgatatagtggaactaaggaatcacattgtgaatgtaaggcaa
gaaatgactcttacatgtgagaagcctattaaagaactagaagtaaagcagactcattta
gaaggtgctctagaacaggaacactcaagaagcattctgtattatgaatccctcaataaa
actctttctaaattgaaggaagtacatgagcagcttttatcaactgaacaggtatcagac
cagaagaatgctccagctgctgagtcagttagcaataatgtcactgagtacatgtctact
ttacatgaaaatataaagaagcagagtttgatgatgctgcaaatgtttgaagatttgcac
attcaagaaagcaagattaacaatctcaccgtctctttggagatggagaaagagtctctc
agaggtgaatgtgaagacatgttatccaaatgcagaaatgattttaaatttcaacttaag
gacacagaagagaatttacatgtgttaaatcaaacattggctgaagttctctttccaatg
gacaataagatggacaaaatgagtgagcaactaaatgatttgacttatgatatggagatc
cttcaacccttgcttgagcagggagcatcactcagacagacaatgacatatgaacaacca
aaggaagcaatagtgataaggaaaaagatagaaaatctgactagtgctgtcaatagtcta
aattttattatcaaagaacttacaaaaagacacaacttacttagaaatgaagtacagggt
cgtgatgatgccttagaaagacgtatcaatgaatatgccttagaaatggaagatggcctc
aataagacaatgactattataaataatgctattgatttcattcaagataactatgcccta
aaagagactttaagtactattaaggataatagtgagatccatcataaatgtacctccgat
atggaaactattttgacatttattcctcagttccaccgtctgaatgattctattcagact
ttggtcaatgacaatcagagatataactttgttttgcaagtcgccaagacccttgcaggt
attcccagagatgagaaactaaatcagtccaacttccaaaagatgtatcaaatgttcaat
gaaaccacttcccaagtgagaaaataccagcaaaatatgagtcatttggaagaaaaacta
ctcttaactaccaagatttccaaaaattttgagactcggttgcaagacattgagtctaaa
gttacccagacgctcataccttattatatttcagttaaaaaaggcagtgtagttacaaat
gagagagatcaggctcttcaactgcaagtattaaattccagatttaaggcgttggaagca
aaatctatccatctttcaattaacttcttttcgcttaacaaaactctccacgaagtttta
acaatgtgtcacaatgcttctacaagtgtgtcagaactgaatgctaccatccctaagtgg
ataaaacattccctgccagatattcaacttcttcagaaaggtctaacagaatttgtggaa
ccaataattcaaataaaaactcaagctgccctatctaatttaacttgttgtatagatcga
tcgttgcctggtagtctggcaaatgttgtcaagtctcagaagcaagtaaaatcattgcca
aagaaaattaacgcacttaagaaaccaacggtaaatcttaccacagtcctgataggccgg
actcaaagaaacacggacaacataatatatcctgaggagtattcaagctgtagtcggcat
ccgtgccaaaatgggggcacgtgcataaatggaagaactagctttacctgtgcctgcaga
catccttttactggtgacaactgcactatcaagcttgtggaagaaaatgctttagctcca
gatttttccaaaggatcttacagatatgcacccatggtggcattttttgcatctcatacg
tatggaatgactatacctggtcctatcctgtttaataacttggatgtcaattatggagct
tcatataccccaagaactggaaaatttagaattccgtatcttggagtatatgttttcaag
tacaccatcgagtcatttagtgctcatatttctggatttttagtggttgatggaatagac
aagcttgcatttgagtctgaaaatattaacagtgaaatacactgtgatagggttttaact
ggggatgccttattagaattaaattatgggcaggaagtctggttacgacttgcaaaagga
acaattccagccaagtttccccctgttactacatttagtggctatttattatatcgtaca
taa

>gi568815594f:89794972_90053415|GENSCAN_predicted_peptide_3|48_aa
MLLTQSLFGGLFTRTRMKDTTERKFMKMLTGHKDEDEDLCDDPLSLNE

>gi568815594f:89794972_90053415|GENSCAN_predicted_CDS_3|147_bp
atgttgctcacacaaagcctgtttggtggtctcttcacacggacgcgcatgaaagatacc
actgaaagaaaatttatgaaaatgcttactggacataaagatgaggatgaagacctttgt
gatgatccactttcacttaatgaataa

>gi568815594f:89794972_90053415|GENSCAN_predicted_peptide_4|310_aa
MEEKEERKRRRKRKRRREEGRDGERKRMEKQKENQDPKDPPTTSGPQTDQPKKHLTNFKS
ETKETRFIRGPKTPAPVTDWEGSLPLVFNHSRDTSLIIHPGFRGVRPRRDACLGPSPLAA
SPTFLGKGPAAPRQTELGPNSSSASAPPPYNPFIASPPHTWSGLQFPSMTSPPPPAQQFT
LKKVAGAKGIVKDLINLTFKVYNNRKKLQFLASTVRQTPATSPAHKNFQTPELQQPGVPP
EPPPRGACYKFQKSGHRAKECLQPRIPPKPHPICVGPHWKSDCPTHLAATPRAPGTLAQG
SLTPSQIFLA

>gi568815594f:89794972_90053415|GENSCAN_predicted_CDS_4|933_bp
atggaggagaaggaggagaggaaaaggagaaggaagaggaagaggaggagggaagaggga
agagatggggaaagaaaaagaatggagaagcaaaaggagaaccaggatcctaaagatcca
cctacgacctcaggtcctcagaccgaccagcccaagaaacatctcaccaatttcaaatcc
gagacaaaggagacacgttttatccgtggacccaaaactccggcgccagtcacggactgg
gaaggcagccttcccttggtgtttaatcattccagggacacctctctgattattcaccca
ggcttcagaggtgtcagaccacgcagggacgcctgccttggtccttcacccttagcggca
agtcccacttttctggggaaggggccagctgctcctcgccagaccgagctaggtcccaat
tcttcctcagcctccgctcctccaccctataatccttttatcgcctcccctcctcacacc
tggtccggcttacagtttccttccatgactagccctccccctcctgcccagcaatttact
cttaaaaaggtggctggagctaaaggcatagtcaaggatttaattaacctcaccttcaag
gtgtacaataatagaaaaaagttgcagttccttgcctccactgtgagacaaaccccagcc
acatctccagcacacaagaacttccaaacgcctgaactgcagcagccaggtgttcctcca
gaacctcctccccgaggagcttgctacaagttccagaaatctggccaccgggccaaggaa
tgcctgcagcccaggattcctcctaagccacatcccatctgtgtgggaccccactggaaa
tcggactgtccaactcacctggcagccactcccagagcccctggaactctggcccaaggc
tctctgactccttcccagatcttcttggcttag

>gi568815594f:89794972_90053415|GENSCAN_predicted_peptide_5|270_aa
MQLNIASEQPHITDLARYMAAVNTIRSEIQSPKAKEIGASAPGLDNALLRADFRYLGQGV
GRQSGLQAKTITDAPKTLDDRNNECLLYVNEKTGGWGLLDSFRMGIGHQKDQVFLIKKKE
RKRKDEERKEERKEHGEEGRKSQSESERGILPLCFNAKTKPSSVLDRRSRAIICGFVGTS
HVSSSSQGAVVIVMVVEAAVGSGTGRTDGEVLWSSETDMAVKVSEFKQGTKIFIPPHRSV
ISCVLLLEWEHELGQGDYLHLSQFLKKASS

>gi568815594f:89794972_90053415|GENSCAN_predicted_CDS_5|813_bp
atgcaattaaatatagcatcagaacagccacatattactgaccttgcacgatacatggca
gccgtgaataccattagaagtgagatccaatccccaaaggccaaggaaattggagcctca
gctccagggttggataatgccctactgagggctgactttcgttacctgggtcagggagta
ggaaggcagtcaggccttcaggcaaaaacaataacagatgctcctaaaaccttggacgat
cggaataatgaatgtcttttgtatgttaatgagaagactggtggctggggactcctagat
agcttcaggatggggattggtcaccagaaagaccaagttttcttgataaagaagaaagaa
aggaaaagaaaggatgaggaaaggaaggaagaaaggaaggaacatggagaggaaggaagg
aaatctcagtctgaatctgaaagaggcattttgcctttgtgcttcaatgccaaaaccaaa
ccatcaagtgttcttgacaggaggtctagggctataatttgtggttttgttggcaccagc
cacgtcagcagcagcagccaaggagcagtggtgatagtgatggtagtagaagcggcagtg
ggaagtggtactggtagaactgatggggaagttttatggagctctgagactgatatggct
gtcaaagtttctgagtttaagcaaggaaccaagatctttatacctccacatcgatcagtc
attagttgtgtactgctcctagaatgggagcatgaacttgggcaaggagactatctccac
ctgagccaatttctgaagaaggccagtagctga