GENSCAN 1.0 Date run: 3-Nov-116 Time: 17:43:08 Sequence gi568815594r:138071959_138342069 : 270111 bp : 36.50% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 10900 11022 123 2 0 19 60 139 0.233 3.84 1.02 Intr + 19771 19904 134 2 2 7 61 155 0.106 4.14 1.03 Intr + 51630 51723 94 2 1 60 61 74 0.118 0.52 1.04 Intr + 54823 54950 128 2 2 76 46 96 0.140 3.68 1.05 Intr + 59129 59219 91 1 1 36 64 80 0.099 -0.95 1.06 Intr + 66926 67093 168 0 0 87 31 139 0.115 7.10 1.07 Intr + 87850 87934 85 2 1 127 94 -26 0.197 -0.14 1.08 Term + 103703 103883 181 2 1 100 43 137 0.789 6.50 1.09 PlyA + 103950 103955 6 1.05 2.12 PlyA - 104221 104216 6 1.05 2.11 Term - 104303 104295 9 2 0 94 48 0 0.014 -6.18 2.10 Intr - 108832 108683 150 1 0 107 86 39 0.360 5.04 2.09 Intr - 110435 110339 97 1 1 91 23 85 0.508 1.39 2.08 Intr - 111347 111244 104 2 2 89 109 49 0.978 5.15 2.07 Intr - 113286 113163 124 2 1 79 103 112 0.917 11.47 2.06 Intr - 142671 142627 45 2 0 91 106 74 0.666 6.11 2.05 Intr - 147407 147308 100 0 1 69 119 45 0.527 3.95 2.04 Intr - 151366 151241 126 2 0 116 86 -18 0.309 0.53 2.03 Intr - 160424 160309 116 1 2 76 78 117 0.641 8.67 2.02 Intr - 164493 164367 127 1 1 30 107 73 0.209 2.22 2.01 Init - 170111 169835 277 2 1 55 97 127 0.075 7.50 2.00 Prom - 171556 171517 40 -6.25 3.09 PlyA - 173368 173363 6 1.05 3.08 Term - 184866 184540 327 0 0 114 49 163 0.741 8.72 3.07 Intr - 216306 216210 97 2 1 118 75 -10 0.004 -0.21 3.06 Intr - 220527 220437 91 1 1 87 31 47 0.016 -2.97 3.05 Intr - 223432 223316 117 2 0 80 68 43 0.154 1.02 3.04 Intr - 231748 231577 172 1 1 104 63 48 0.089 2.49 3.03 Intr - 242530 242357 174 1 0 27 101 86 0.491 3.01 3.02 Intr - 249028 248912 117 1 0 117 36 71 0.740 4.54 3.01 Init - 256244 256239 6 2 0 98 71 10 0.615 0.66 3.00 Prom - 258375 258336 40 -0.45 4.02 PlyA - 259098 259093 6 1.05 4.01 Sngl - 262288 261938 351 1 0 9 40 211 0.175 4.20 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815594r:138071959_138342069|GENSCAN_predicted_peptide_1|334_aa XQSVNQFSEVLPETITSIKAIQNVARGLVVVCKLLPIHSKIGEPEDTKNLYVAAYKDGPQ EHFMVNGLLSGRNAGQLLCRNCEKGQQPSEAHTGEHQQGIHLHESPLGGLTVRDWIAAPA LAQRSPSVAQNEAPEGASHKPWLFPHGIKSAGAQNARVKELPDVQTEEHHPGIHLHESPF GGFTVRGQIAGRTKEANLVVMWKQGCVEVEVQNRQGSMSVYGELSATGSRRNQGEHKCDN LEENCLCKPFYLLWTHFLNPKMEVRLVICLIHSHRNAIKQKVVQYWHPVAGEIYQISENL SSLDSEHSLAVSSQQPFTIFRVLFGYLSFFMETT >gi568815594r:138071959_138342069|GENSCAN_predicted_CDS_1|1005_bp naacaatctgttaatcaattctccgaagttctaccagagacaataacctccatcaaagcc attcaaaatgtggcccgtggactggtggtggtctgcaaactgctaccaatccacagcaag ataggtgaaccagaggacacaaagaacctctatgtggcagcctacaaagacgggccccag gagcacttcatggtcaatggtctcttatcaggaaggaatgctggtcagttgctgtgtcga aactgtgaaaagggccagcagccatcagaggcccacacaggagagcaccagcaggggatc cacctgcatgagtctcctctaggtggtctcactgttagggattggattgcagctccagcc ttggctcaaaggagcccaagtgtagctcagaatgaagctccagagggtgcaagccataag ccttggctgtttccacatggtattaagtctgcaggtgctcagaatgcacgtgtgaaagag ctaccagatgtccagacagaagagcatcacccagggattcacctgcatgagtctcctttc ggtggcttcacagtcaggggtcagattgcaggtagaacaaaggaggctaatttagttgtc atgtggaaacaaggatgtgtagaagtggaggtacagaatagacaaggaagcatgagtgtt tatggagagctttcagcaacaggaagcagaaggaatcaaggagagcacaaatgtgacaat ctggaagagaattgcctctgcaagccattttacttactttggactcattttcttaatcca aaaatggaagtaaggcttgtcatctgtcttattcatagtcacagaaatgctatcaaacaa aaagtggttcaatactggcatcctgtggctggagagatttatcaaatctctgaaaatctc agctccttggattctgaacattccctggctgtcagttctcagcagcctttcaccattttc cgagtgctatttggttacctctcatttttcatggaaacaacctag >gi568815594r:138071959_138342069|GENSCAN_predicted_peptide_2|424_aa MVRKPVVSTISKGGYLQGNVNGRLPSLGNKEPPGQEKVQLKRKVTLLRGVSIIIGTIIGA GIFISPKGVLQNTGSVGMSLTIWTVCGVLSLFGALSYAELGTTIKKSGGHYTYILEVFGP LPAFVRVWVELLIIRPAATAVISLAFGRYILEPFFIQCEIPELAIKLITAVGITVVMVLN SMSVSWSARIQIFLTFCKLTAILIIIVPGVMQLIKGQTQNFKDAFSGRDSSITRLPLAFY YGMYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTIGYVLTNVAYFTTINAEELLLS NAVAVTFSERLLGNFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHV RKHTPLPAVIVLHPLTMIMLFSGDLDSLLNFLSFARWLFIGLAVAGLIYLRYKCPDMHRP FKLP >gi568815594r:138071959_138342069|GENSCAN_predicted_CDS_2|1275_bp atggtcagaaagcctgttgtgtccaccatctccaaaggaggttacctgcagggaaatgtt aacgggaggctgccttccctgggcaacaaggagccacctgggcaggagaaagtgcagctg aagaggaaagtcactttactgaggggagtctccattatcattggcaccatcattggagca ggaatcttcatctctcctaagggcgtgctccagaacacgggcagcgtgggcatgtctctg accatctggacggtgtgtggggtcctgtcactatttggagctttgtcttatgctgaattg ggaacaactataaagaaatctggaggtcattacacatatattttggaagtctttggtcca ttaccagcttttgtacgagtctgggtggaactcctcataatacgccctgcagctactgct gtgatatccctggcatttggacgctacattctggaaccattttttattcaatgtgaaatc cctgaacttgcgatcaagctcattacagctgtgggcataactgtagtgatggtcctaaat agcatgagtgtcagctggagcgcccggatccagattttcttaaccttttgcaagctcaca gcaattctgataattatagtccctggagttatgcagctaattaaaggtcaaacgcagaac tttaaagacgccttttcaggaagagattcaagtattacgcggttgccactggctttttat tatggaatgtatgcatatgctggctggttttacctcaactttgttactgaagaagtagaa aaccctgaaaaaaccattccccttgcaatatgtatatccatggccattgtcaccattggc tatgtgctgacaaatgtggcctactttacgaccattaatgctgaggagctgctgctttca aatgcagtggcagtgaccttttctgagcggctactgggaaatttctcattagcagttccg atctttgttgccctctcctgctttggctccatgaacggtggtgtgtttgctgtctccagg ttattctatgttgcgtctcgagagggtcaccttccagaaatcctctccatgattcatgtc cgcaagcacactcctctaccagctgttattgttttgcaccctttgacaatgataatgctc ttctctggagacctcgacagtcttttgaatttcctcagttttgccaggtggctttttatt gggctggcagttgctgggctgatttatcttcgatacaaatgcccagatatgcatcgtcct ttcaagctgccttga >gi568815594r:138071959_138342069|GENSCAN_predicted_peptide_3|366_aa MKTSLGTPGEGKLTGPLKLNHYNLSRELANFTLLLHLEQLGTYMWSTSIEKRLNITDIRE MQIKTTSHKSEWLLIKSQKVTVADKVTEERKHLYIVGGNHFLLVCFGKMSCYVMGCPMER PMWQGAESGLGPIAGGELRPSLIAYEELYPASNQVPRSDPAYHTTFSYQISFVSCVTVSL AFLVFDDLDSVEYWTDTPRGVFFVDDNHCIWIGTMWPSLVPACTPIPPNILPEFIVTLTK IHFHLHFPSFRNNFPSHQVSKHYLIFTSSASQCLLLTNVNKVVVYLTHNFFNAASPAGIL HSQWRFCPGFAGATGPWHLDERETVAPQNSEMPATVEFQGVLQLLLRESRGLSPKEVLQL SFIPAA >gi568815594r:138071959_138342069|GENSCAN_predicted_CDS_3|1101_bp atgaagacctcacttggaacccctggagaaggaaaattaacaggccccctgaagctgaac cactacaacctttcaagggaattggctaatttcactttgctgctccatttggagcagctg gggacatacatgtggtcaacaagcattgaaaaaaggctcaatatcactgacattagagaa atgcaaatcaaaaccacctcacacaagtcagaatggctgttgataaaaagtcaaaaagta actgttgctgacaaggttacagaggaaaggaaacacttgtacattgttggtgggaatcac tttttgcttgtgtgttttggtaagatgagttgctacgttatgggctgccctatggaaaga cccatgtggcaaggagctgagagtggcctcgggccaatagctggtggggaactgaggccc agtctaatagcctatgaagaactgtatcctgccagcaaccaagttccaagatctgatcca gcataccacactacatttagctatcaaatctcctttgtttcctgtgtgacagtttctctg gctttccttgtttttgatgaccttgacagtgttgagtactggacagacaccccaaggggt gtcttctttgtggatgataatcactgtatttggattggaacaatgtggccttctttagtg cctgcatgcacacccataccccccaacatactgccagagttcatcgtcacactaaccaaa atccacttccatctccatttcccaagttttagaaataacttcccaagtcaccaggtaagt aaacactacttgattttcacaagcagcgccagtcaatgtttattattgacaaatgtcaac aaagtggttgtgtacctgacacacaattttttcaatgctgcttcaccagccggaattctc cacagccagtggcgcttctgcccaggctttgctggggccactgggccctggcatctggac gagagggagacagtggcaccccaaaactcggagatgccagcaactgtggagttccaaggg gtgttacagcttttgctcagggagtcccgaggtctgagccccaaggaagtgttacagctc tctttcattcctgctgcctga >gi568815594r:138071959_138342069|GENSCAN_predicted_peptide_4|116_aa MVGHKNNLVECSSWSHEKYGQTLGRNSILLVMSSGLADSEIFKMQSTGKLCKIQEPSSLC TTASSYICAIWLKVITVTTEENNTPNYPLSFSWQNRETKHKENLHYFIEITCINAR >gi568815594r:138071959_138342069|GENSCAN_predicted_CDS_4|351_bp atggttggacataaaaataatcttgtggaatgtagttcttggagccatgagaaatatggg cagaccctgggaagaaatagcatcctattggtgatgtcttcagggcttgctgactcagaa atcttcaaaatgcagagcacaggaaagctgtgcaagatccaagaaccctcttcactttgc acaactgcttcctcatatatttgtgccatctggttgaaagtgattactgtgactaccgag gaaaataataccccaaattatccactcagcttcagttggcagaacagagaaacaaagcat aaagaaaatttgcattatttcattgagattacatgtatcaatgcaaggtga