Result of FASTA (ccds) for pF1KB5398
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5398, 181 aa
  1>>>pF1KB5398 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1923+/-0.00101; mu= 13.5174+/- 0.061
 mean_var=87.3514+/-18.900, 0's: 0 Z-trim(105.1): 165  B-trim: 287 in 1/48
 Lambda= 0.137227
 statistics sampled from 8046 (8249) to 8046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1             ( 181) 1194 246.2 8.3e-66
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12            ( 181) 1153 238.1 2.3e-63
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3             ( 180)  975 202.8 9.4e-53
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7            ( 180)  972 202.2 1.4e-52
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14            ( 175)  856 179.2 1.1e-45
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  723 152.9 9.8e-38
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5           ( 574)  699 148.7   6e-36
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10        ( 179)  611 130.8 4.6e-31
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2          ( 179)  607 130.0   8e-31
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5          ( 569)  611 131.2   1e-30
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5           ( 546)  582 125.5 5.4e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11            ( 184)  553 119.3 1.3e-27
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3          ( 192)  545 117.7 4.1e-27
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10            ( 182)  536 115.9 1.4e-26
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2          ( 192)  523 113.4 8.5e-26
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2         ( 201)  523 113.4 8.8e-26
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12           ( 135)  500 108.7 1.6e-24
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7          ( 200)  498 108.4 2.7e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17       ( 179)  496 108.0 3.3e-24
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2         ( 142)  486 105.9 1.1e-23
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17          ( 201)  470 102.9 1.3e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3           ( 186)  468 102.5 1.6e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13        ( 196)  442 97.3 5.8e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17       (  88)  435 95.6 8.6e-21
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17       ( 141)  435 95.8 1.2e-20
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17   ( 177)  435 95.9 1.4e-20
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17       ( 177)  435 95.9 1.4e-20
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17       ( 125)  429 94.6 2.5e-20
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17   ( 125)  429 94.6 2.5e-20
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17   (  95)  427 94.1 2.7e-20
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17       (  95)  427 94.1 2.7e-20
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3          ( 186)  402 89.4 1.4e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1         ( 186)  391 87.2 6.1e-18
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11           ( 157)  366 82.2 1.7e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 201)  367 82.5 1.7e-16
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 173)  324 73.9 5.7e-14
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428)  321 73.7 1.6e-13
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5         ( 204)  315 72.2 2.2e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5          ( 198)  311 71.4 3.7e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10         ( 198)  295 68.2 3.4e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1        ( 147)  293 67.7 3.6e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5         ( 244)  295 68.3 3.9e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 154)  292 67.5 4.2e-12


>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1                  (181 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1294.9  bits: 246.2 E(32554): 8.3e-66
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
              130       140       150       160       170       180

        
pF1KB5 K
       :
CCDS15 K
        

>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12                 (181 aa)
 initn: 1153 init1: 1153 opt: 1153  Z-score: 1251.0  bits: 238.1 E(32554): 2.3e-63
Smith-Waterman score: 1153; 96.1% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :::::.::.:.:.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
              130       140       150       160       170       180

        
pF1KB5 K
       :
CCDS87 K
        

>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3                  (180 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 1060.6  bits: 202.8 E(32554): 9.4e-53
Smith-Waterman score: 975; 81.9% identity (94.4% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::  ...::. :::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       : ::::::::::.:::::.::::::::::::::::::::..:. .::..::  :::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       ::.:::::::::::  .:.::::::.:::.:.::.::::::.: :::::::::::.:   
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
              130       140       150       160       170       180

        
pF1KB5 K

>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7                 (180 aa)
 initn: 972 init1: 972 opt: 972  Z-score: 1057.4  bits: 202.2 E(32554): 1.4e-52
Smith-Waterman score: 972; 81.9% identity (93.2% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::   . ::. .::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       : ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       :::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.::::::..:   
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
              130       140       150       160       170       180

        
pF1KB5 K

>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14                 (175 aa)
 initn: 876 init1: 851 opt: 856  Z-score: 933.4  bits: 179.2 E(32554): 1.1e-45
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-179:1-175)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::.....    .::.:::::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96 MGKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ..:.:::::::::::::::::. .:::::::::  ::.:..:::.:: :.. . :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       .:.::::::::.::.  :: .::::  .: ::::.: .:::::::::::: ::... .. 
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 
        120       130       140       150       160       170      

        
pF1KB5 K

>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12                (181 aa)
 initn: 738 init1: 723 opt: 723  Z-score: 790.9  bits: 152.9 E(32554): 9.8e-38
Smith-Waterman score: 723; 56.9% identity (87.3% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::..:...:..::: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       :.:::::::. .::...:....::: .:. :.: :  : ::.: :: :...:: . :...
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
              130       140       150       160       170       180

        
pF1KB5 K
       .
CCDS44 Q
        

>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5                (574 aa)
 initn: 698 init1: 558 opt: 699  Z-score: 758.8  bits: 148.7 E(32554): 6e-36
Smith-Waterman score: 699; 62.8% identity (86.0% similar) in 164 aa overlap (15-177:402-565)

                               10        20        30        40    
pF1KB5                 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
                                     : :.:.. .:::.:::::::.:::  :.. 
CCDS39 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
             380       390       400       410       420       430 

           50        60        70        80        90       100    
pF1KB5 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR
        :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..::.
CCDS39 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
             440       450       460       470       480       490 

          110       120       130       140        150       160   
pF1KB5 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSG
        :: ..:.: :::::.::.::::::. .:... :::. :.::.:   :.::::.  : ::
CCDS39 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
             500       510       520       530       540       550 

           170       180      
pF1KB5 DGLYEGLDWLSNQLRNQK     
        :::::::::: ::         
CCDS39 MGLYEGLDWLSRQLVAAGVLDVA
             560       570    

>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10             (179 aa)
 initn: 609 init1: 588 opt: 611  Z-score: 671.2  bits: 130.8 E(32554): 4.6e-31
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-177:1-176)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: .  ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
         : .::.:::...:  :  :..::. .:.:::: ::::.  ..:::.::::...:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       .:.::::::. . :.::::.  : : :.. . :.::. :: .:.:: .::.:.....   
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
     120       130       140       150       160       170         

        
pF1KB5 K

>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2               (179 aa)
 initn: 592 init1: 592 opt: 607  Z-score: 666.9  bits: 130.0 E(32554): 8e-31
Smith-Waterman score: 607; 48.9% identity (80.9% similar) in 178 aa overlap (1-178:1-177)

               10        20        30        40        50        60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :: .:. ... ::...: ....:::: ::::::::.....:.: : :::: ::: .  .:
CCDS21 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
         : .::.:::...:  :  :. ::. .: ::::.::::.. .::::..:::...:: : 
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
       ::.::::::. . :..:::.. : : :.. ..:.::: :: .:.:: .::.:. ..:.  
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
     120       130       140       150       160       170         

        
pF1KB5 K

>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5               (569 aa)
 initn: 606 init1: 558 opt: 611  Z-score: 664.7  bits: 131.2 E(32554): 1e-30
Smith-Waterman score: 611; 60.4% identity (85.9% similar) in 149 aa overlap (15-162:402-550)

                               10        20        30        40    
pF1KB5                 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
                                     : :.:.. .:::.:::::::.:::  :.. 
CCDS43 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
             380       390       400       410       420       430 

           50        60        70        80        90       100    
pF1KB5 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR
        :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..::.
CCDS43 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
             440       450       460       470       480       490 

          110       120       130       140        150       160   
pF1KB5 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSG
        :: ..:.: :::::.::.::::::. .:... :::. :.::.:   :.::::.  : : 
CCDS43 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSV
             500       510       520       530       540       550 

           170       180 
pF1KB5 DGLYEGLDWLSNQLRNQK
                         
CCDS43 FQIICDQYTGKEVVTEKG
             560         




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:18:46 2016 done: Thu Nov  3 17:18:46 2016
 Total Scan time:  1.830 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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