Result of FASTA (ccds) for pF1KB5280
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5280, 246 aa
  1>>>pF1KB5280 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8549+/-0.000989; mu= 12.2893+/- 0.060
 mean_var=80.3947+/-15.685, 0's: 0 Z-trim(104.6): 32  B-trim: 0 in 0/51
 Lambda= 0.143041
 statistics sampled from 7971 (7989) to 7971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22         ( 246) 1571 333.8 6.7e-92
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7           ( 247) 1387 295.8 1.8e-80
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8           ( 245) 1157 248.3 3.5e-66
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20         ( 246) 1150 246.9 9.5e-66
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2          ( 245) 1107 238.0 4.4e-63
CCDS288.1 SFN gene_id:2810|Hs108|chr1              ( 248) 1012 218.4 3.6e-57
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17         ( 255)  986 213.0 1.5e-55


>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22              (246 aa)
 initn: 1571 init1: 1571 opt: 1571  Z-score: 1763.4  bits: 333.8 E(32554): 6.7e-92
Smith-Waterman score: 1571; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
              190       200       210       220       230       240

             
pF1KB5 EAGEGN
       ::::::
CCDS13 EAGEGN
             

>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7                (247 aa)
 initn: 1387 init1: 1387 opt: 1387  Z-score: 1558.2  bits: 295.8 E(32554): 1.8e-80
Smith-Waterman score: 1387; 87.0% identity (95.9% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
       : :::::.:.::::::::::::::.::: :::::::::::.:::::::::::::::::::
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       :::::::::: :::::::.: :.:::::::::::.::.:::::::..:::::.. :::::
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::::::::::::::::::.:::. .:::.:: ::.:: :::::.::::::::::::::.:
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
       :::::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::.
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
              190       200       210       220       230       240

              
pF1KB5 EAGEGN 
       ..:::: 
CCDS55 DGGEGNN
              

>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8                (245 aa)
 initn: 1019 init1: 668 opt: 1157  Z-score: 1301.7  bits: 248.3 E(32554): 3.5e-66
Smith-Waterman score: 1157; 75.5% identity (89.4% similar) in 245 aa overlap (3-245:2-242)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
         :...:.:.:.::::::::::::. ::.::: .  ::::.:::::::::::::::::::
CCDS62  MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       ::.:::::::  .: ::: . .. :::::: ::. .::::::::.:::: : .  : :::
CCDS62 RVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESK
      60          70        80        90       100       110       

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::::::::::::::::::.:. :...:. :. ::.:::::::..::::::::::::::::
CCDS62 VFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFS
         120       130       140       150       160       170     

              190       200       210       220       230          
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQ-D
       :::::: :.::.:: ::: :::.::::::::.:.:::::::::::::::::::::: : :
CCDS62 VFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD
         180       190       200       210       220       230     

     240         
pF1KB5 E-EAGEGN  
       : :::::   
CCDS62 EAEAGEGGEN
         240     

>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20              (246 aa)
 initn: 1003 init1: 658 opt: 1150  Z-score: 1293.9  bits: 246.9 E(32554): 9.5e-66
Smith-Waterman score: 1150; 75.5% identity (89.0% similar) in 245 aa overlap (3-245:4-244)

                10        20        30        40        50         
pF1KB5  MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSS
          :. .:.:.:.::::::::::::.::::::: .. ::::.::::::::::::::::::
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB5 WRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYES
       :::::::::::  . :::: .  : :::::: ::. .::::: ::::.:: : .  : ::
CCDS13 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPES
               70          80        90       100       110        

     120       130       140       150       160       170         
pF1KB5 KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNF
       :::::::::::.:::.:::::..:...:  :. ::.:::::::..:::::::::::::::
CCDS13 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KB5 SVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
       ::::::: :.::.:: ::: :::.::::::::::.:::::::::::::::::::::..: 
CCDS13 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
        180       190       200       210       220       230      

     240         
pF1KB5 EE--AGEGN 
       .:  ::::  
CCDS13 DEGDAGEGEN
        240      

>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2               (245 aa)
 initn: 968 init1: 647 opt: 1107  Z-score: 1245.9  bits: 238.0 E(32554): 4.4e-63
Smith-Waterman score: 1107; 71.4% identity (88.2% similar) in 245 aa overlap (3-245:2-242)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
         .. .:.:.:.::::::::::::. :::::: .  ::::.:::::::::::::.:::.:
CCDS16  MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       ::::::::::  : ..:::. .: ::::.:.::...:. :: ::::.:: : ..   :::
CCDS16 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESK
      60          70        80        90       100       110       

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::::::::::.::::::: :. ...... :..::.:::.:::..::::::::::::::::
CCDS16 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
       :::::: : :: :: ::: :::.:::::::::::::::::::::::::::::::::.  :
CCDS16 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
         180       190       200       210       220       230     

                 
pF1KB5 E--AGEGN  
       :  :.::   
CCDS16 ECDAAEGAEN
         240     

>>CCDS288.1 SFN gene_id:2810|Hs108|chr1                   (248 aa)
 initn: 981 init1: 596 opt: 1012  Z-score: 1139.9  bits: 218.4 E(32554): 3.6e-57
Smith-Waterman score: 1012; 64.5% identity (88.4% similar) in 242 aa overlap (3-244:2-241)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
         .: .:.:.:.::::::::.:::. ::...: .: :: :.:::::::::::::..:..:
CCDS28  MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       ::.::::::.  .:.:.:  .:. ::::.: ::. ::. ::.:::. :::. .:   ::.
CCDS28 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGD--AESR
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::::::::::::::::::.:. :. .......::.::..:::..: ::.:::::::::::
CCDS28 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
       ::.::: :.::.:  ::: .::.:.:.: ::.::::::::::::::::::::::.:.  :
CCDS28 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
       180       190       200       210       220       230       

                  
pF1KB5 EAGEGN     
       :.::       
CCDS28 EGGEAPQEPQS
       240        

>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17              (255 aa)
 initn: 1010 init1: 579 opt: 986  Z-score: 1110.7  bits: 213.0 E(32554): 1.5e-55
Smith-Waterman score: 986; 63.8% identity (82.5% similar) in 240 aa overlap (1-240:1-238)

               10        20        30        40        50        60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
       : :::.:. .:.:::::::::.:. .:: :. ..  :. :.:::::::::::.::::.::
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
       :.:::::::    :.: ::. .. ::. .: ::. .: :.:..::: ::   :    :::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANT--GESK
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
       ::: ::::::.::::: :.:. .. ..: : .::: : .:.  .. ::::::::::::::
CCDS11 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
       :::::: :.:..:: ::: ::::::::::::.:.::::::::::::::::::::::.: .
CCDS11 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD
      180       190       200       210       220       230        

                        
pF1KB5 EAGEGN           
                        
CCDS11 GEEQNKEALQDVEDENQ
      240       250     




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:30:24 2016 done: Thu Nov  3 16:30:24 2016
 Total Scan time:  2.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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