Result of FASTA (ccds) for pF1KB5242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5242, 522 aa
  1>>>pF1KB5242 522 - 522 aa - 522 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9349+/-0.000634; mu= 12.5191+/- 0.039
 mean_var=116.1189+/-23.033, 0's: 0 Z-trim(115.6): 10  B-trim: 0 in 0/51
 Lambda= 0.119021
 statistics sampled from 16199 (16209) to 16199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.498), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(32554)
CCDS59088.1 FASTK gene_id:10922|Hs108|chr7         ( 522) 3612 630.5 1.4e-180
CCDS5919.1 FASTK gene_id:10922|Hs108|chr7          ( 408) 2193 386.8 2.5e-107
CCDS5918.1 FASTK gene_id:10922|Hs108|chr7          ( 549) 2193 386.9 3.2e-107


>>CCDS59088.1 FASTK gene_id:10922|Hs108|chr7              (522 aa)
 initn: 3612 init1: 3612 opt: 3612  Z-score: 3355.5  bits: 630.5 E(32554): 1.4e-180
Smith-Waterman score: 3612; 100.0% identity (100.0% similar) in 522 aa overlap (1-522:1-522)

               10        20        30        40        50        60
pF1KB5 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EQERRLRLPPKPPPPLQPLLREARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQERRLRLPPKPPPPLQPLLREARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 QDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGL
              430       440       450       460       470       480

              490       500       510       520  
pF1KB5 MGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
       ::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
              490       500       510       520  

>>CCDS5919.1 FASTK gene_id:10922|Hs108|chr7               (408 aa)
 initn: 2413 init1: 2183 opt: 2193  Z-score: 2040.2  bits: 386.8 E(32554): 2.5e-107
Smith-Waterman score: 2353; 92.9% identity (92.9% similar) in 380 aa overlap (170-522:29-408)

     140       150       160       170       180       190         
pF1KB5 QDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCALEQERRLRLPPKPPPPLQPL
                                     ::::::::::::::::::::::::::::::
CCDS59   MRRPRGEPGPRAPRPTEGATCAGPGESCFPSDGPLVCALEQERRLRLPPKPPPPLQPL
                 10        20        30        40        50        

     200                                  210       220       230  
pF1KB5 LR---------------------------EARPEELTPHVMVLLAQHLARHRLREPQLLE
       ::                           :::::::::::::::::::::::::::::::
CCDS59 LRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVMVLLAQHLARHRLREPQLLE
       60        70        80        90       100       110        

            240       250       260       270       280       290  
pF1KB5 AIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNIL
      120       130       140       150       160       170        

            300       310       320       330       340       350  
pF1KB5 MSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPR
      180       190       200       210       220       230        

            360       370       380       390       400       410  
pF1KB5 RQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSS
      240       250       260       270       280       290        

            420       430       440       450       460       470  
pF1KB5 GAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRA
      300       310       320       330       340       350        

            480       490       500       510       520  
pF1KB5 LRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
      360       370       380       390       400        

>>CCDS5918.1 FASTK gene_id:10922|Hs108|chr7               (549 aa)
 initn: 2183 init1: 2183 opt: 2193  Z-score: 2038.3  bits: 386.9 E(32554): 3.2e-107
Smith-Waterman score: 3548; 95.1% identity (95.1% similar) in 549 aa overlap (1-522:1-549)

               10        20        30        40        50        60
pF1KB5 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
              130       140       150       160       170       180

              190       200                                  210   
pF1KB5 EQERRLRLPPKPPPPLQPLLR---------------------------EARPEELTPHVM
       :::::::::::::::::::::                           ::::::::::::
CCDS59 EQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVM
              190       200       210       220       230       240

           220       230       240       250       260       270   
pF1KB5 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL
              250       260       270       280       290       300

           280       290       300       310       320       330   
pF1KB5 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL
              310       320       330       340       350       360

           340       350       360       370       380       390   
pF1KB5 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ
              370       380       390       400       410       420

           400       410       420       430       440       450   
pF1KB5 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV
              430       440       450       460       470       480

           460       470       480       490       500       510   
pF1KB5 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL
              490       500       510       520       530       540

           520  
pF1KB5 GLRWGPEGG
       :::::::::
CCDS59 GLRWGPEGG
                




522 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:25:20 2016 done: Thu Nov  3 16:25:20 2016
 Total Scan time:  4.050 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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