Result of FASTA (omim) for pF1KB5227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5227, 494 aa
  1>>>pF1KB5227 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.5186+/-0.000458; mu= -33.0425+/- 0.028
 mean_var=756.7353+/-159.661, 0's: 0 Z-trim(125.7): 89  B-trim: 873 in 1/60
 Lambda= 0.046623
 statistics sampled from 49929 (50057) to 49929 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.587), width:  16
 Scan time: 12.360

The best scores are:                                      opt bits E(85289)
XP_016880508 (OMIM: 603428) PREDICTED: BUB3-intera ( 494) 3561 254.4 5.6e-67
NP_001091977 (OMIM: 603428) BUB3-interacting and G ( 494) 3561 254.4 5.6e-67
XP_011523487 (OMIM: 603428) PREDICTED: BUB3-intera ( 440) 3140 226.0 1.7e-58
NP_003448 (OMIM: 603428) BUB3-interacting and GLEB ( 478) 2232 164.9 4.5e-40
NP_001027464 (OMIM: 603428) BUB3-interacting and G ( 463) 2142 158.9 2.9e-38
XP_016880509 (OMIM: 603428) PREDICTED: BUB3-intera ( 447) 1554 119.3 2.3e-26
NP_006239 (OMIM: 168810) basic salivary proline-ri ( 416)  427 43.5  0.0014


>>XP_016880508 (OMIM: 603428) PREDICTED: BUB3-interactin  (494 aa)
 initn: 3561 init1: 3561 opt: 3561  Z-score: 1323.4  bits: 254.4 E(85289): 5.6e-67
Smith-Waterman score: 3561; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
              430       440       450       460       470       480

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
XP_016 MGMRPPVMSQGGRY
              490    

>>NP_001091977 (OMIM: 603428) BUB3-interacting and GLEBS  (494 aa)
 initn: 3561 init1: 3561 opt: 3561  Z-score: 1323.4  bits: 254.4 E(85289): 5.6e-67
Smith-Waterman score: 3561; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
              430       440       450       460       470       480

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
NP_001 MGMRPPVMSQGGRY
              490    

>>XP_011523487 (OMIM: 603428) PREDICTED: BUB3-interactin  (440 aa)
 initn: 3140 init1: 3140 opt: 3140  Z-score: 1171.1  bits: 226.0 E(85289): 1.7e-58
Smith-Waterman score: 3140; 100.0% identity (100.0% similar) in 440 aa overlap (55-494:1-440)

           30        40        50        60        70        80    
pF1KB5 ILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEG
                                     ::::::::::::::::::::::::::::::
XP_011                               MQVHKETIDAVPNAIPGRTDIELEIYGMEG
                                             10        20        30

           90       100       110       120       130       140    
pF1KB5 IPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQ
               40        50        60        70        80        90

          150       160       170       180       190       200    
pF1KB5 PGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPM
              100       110       120       130       140       150

          210       220       230       240       250       260    
pF1KB5 GGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQP
              160       170       180       190       200       210

          270       280       290       300       310       320    
pF1KB5 PVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLN
              220       230       240       250       260       270

          330       340       350       360       370       380    
pF1KB5 STPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDE
              280       290       300       310       320       330

          390       400       410       420       430       440    
pF1KB5 DISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQY
              340       350       360       370       380       390

          450       460       470       480       490    
pF1KB5 GGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY
              400       410       420       430       440

>>NP_003448 (OMIM: 603428) BUB3-interacting and GLEBS mo  (478 aa)
 initn: 2088 init1: 2088 opt: 2232  Z-score: 840.5  bits: 164.9 E(85289): 4.5e-40
Smith-Waterman score: 3402; 96.8% identity (96.8% similar) in 494 aa overlap (1-494:1-478)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::                ::::::::::::::::::::::::::::::::::::::::
NP_003 MPPG----------------MMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
                              190       200       210       220    

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
          230       240       250       260       270       280    

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
          290       300       310       320       330       340    

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
          350       360       370       380       390       400    

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
          410       420       430       440       450       460    

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
NP_003 MGMRPPVMSQGGRY
          470        

>>NP_001027464 (OMIM: 603428) BUB3-interacting and GLEBS  (463 aa)
 initn: 2047 init1: 2047 opt: 2142  Z-score: 808.0  bits: 158.9 E(85289): 2.9e-38
Smith-Waterman score: 3310; 93.7% identity (93.7% similar) in 494 aa overlap (1-494:1-463)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::                        
NP_001 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQ------------------------
              250       260       270                              

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------AQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
               280       290       300       310       320         

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
     330       340       350       360       370       380         

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
     390       400       410       420       430       440         

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
NP_001 MGMRPPVMSQGGRY
     450       460   

>>XP_016880509 (OMIM: 603428) PREDICTED: BUB3-interactin  (447 aa)
 initn: 1968 init1: 1430 opt: 1554  Z-score: 594.4  bits: 119.3 E(85289): 2.3e-26
Smith-Waterman score: 3151; 90.5% identity (90.5% similar) in 494 aa overlap (1-494:1-447)

               10        20        30        40        50        60
pF1KB5 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
       ::::                ::::::::::::::::::::::::::::::::::::::::
XP_016 MPPG----------------MMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQA
                              190       200       210       220    

              250       260       270       280       290       300
pF1KB5 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKA
       ::::::::::::::::::::::::::::::::::::                        
XP_016 QAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQ------------------------
          230       240       250       260                        

              310       320       330       340       350       360
pF1KB5 LFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------AQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA
                     270       280       290       300       310   

              370       380       390       400       410       420
pF1KB5 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGG
           320       330       340       350       360       370   

              430       440       450       460       470       480
pF1KB5 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPP
           380       390       400       410       420       430   

              490    
pF1KB5 MGMRPPVMSQGGRY
       ::::::::::::::
XP_016 MGMRPPVMSQGGRY
           440       

>>NP_006239 (OMIM: 168810) basic salivary proline-rich p  (416 aa)
 initn: 157 init1: 157 opt: 427  Z-score: 185.2  bits: 43.5 E(85289): 0.0014
Smith-Waterman score: 474; 29.4% identity (48.4% similar) in 415 aa overlap (110-485:17-411)

      80        90       100       110       120       130         
pF1KB5 YGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYI
                                     :. ... ....: .  . .:: . :: :  
NP_006               MLLILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNK
                             10        20        30        40      

     140           150         160       170             180       
pF1KB5 P--PMAQPGLP--PVPGAPGMP--PGIPPLMPGVPPLMPGM------PPVMPGMPPGLHH
       :  : . :: :  : : . ..:  :  ::  :  :: . :       ::  :  ::    
NP_006 PQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD
         50        60        70        80        90       100      

       190        200       210       220              230         
pF1KB5 QRKYTQSFCGE-NIMMPMGGMMPPGPGIPPLMPGMPPGM-------PPPVPRP-GIPPMT
       . .  .:  :. .   :.:: .: ::  ::  :  :: .       :::  .: : ::. 
NP_006 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG
        110       120       130       140       150       160      

      240          250       260        270           280          
pF1KB5 QAQAVSA---PGILNRPPAPTATVP-APQPPVTKPLFP--SAGQ--MGTPVTSSSTA---
       . .. :.   ::  . ::   .. : .: ::  ::  :  ..:.  .: :  ..  .   
NP_006 DNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP
        170       180       190       200       210       220      

       290       300       310         320       330       340     
pF1KB5 SSNSESLSASSKALFPSTAQAQAAVQ--GPVGTDFKPLNSTPATTTEPPKPTFPAYTQST
       .....: :: :    :.    :.. :  ::     :: .  :   ..:  :  :.  :. 
NP_006 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP
        230       240       250       260       270       280      

         350       360       370       380       390       400     
pF1KB5 ASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRP
           .. . .. .: .    ::      ....    :         . : :      :. 
NP_006 PPQGGSKSRSSRSPPG----KPQGPPPQGGNQPQGPPPPP-----GKPQGPP-----PQG
        290       300           310       320                 330  

         410        420       430       440          450        460
pF1KB5 GQAPIGNPPVG-PIGGMMPPQPGIPQQQGMRPPMPPHG---QYGGHHQGMPGYLP-GAMP
       :. : : :: : : :   ::: :  ....  ::  :.:   : :.. :: :   : :. :
NP_006 GNKPQGPPPPGKPQGP--PPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPP--PAGGNP
            340         350       360       370       380          

              470       480       490    
pF1KB5 PYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY
          :.::   :   ::::::.: ::         
NP_006 QQPQAPPAGQPQ--GPPRPPQGGRPSRPPQ    
      390       400         410          




494 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:22:52 2016 done: Thu Nov  3 16:22:54 2016
 Total Scan time: 12.360 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com