GENSCAN 1.0	Date run:  3-Nov-116	Time: 16:15:57

Sequence gi568815588r:80055856_80272861 : 217006 bp : 46.17% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  22845  22931   87  2  0  110   70   122 0.963  12.15
 1.02 Intr +  23228  23329  102  1  0   42   77    81 0.853   2.77
 1.03 Intr +  25986  26089  104  2  2   98   82    77 0.636   7.07
 1.04 Term +  34942  35062  121  1  1  109   45    23 0.071  -1.95
 1.05 PlyA +  35988  35993    6                               1.05

 2.00 Prom +  42473  42512   40                              -3.26
 2.01 Sngl +  50051  50455  405  1  0   82   38   203 0.660  10.98
 2.02 PlyA +  51410  51415    6                               1.05

 3.00 Prom +  67401  67440   40                              -4.66
 3.01 Init +  76908  76971   64  2  1  105  117   216 0.999  25.51
 3.02 Intr +  86227  86324   98  2  2   83   77    50 0.924   3.13
 3.03 Intr +  88368  88488  121  2  1   93   83   137 0.980  13.77
 3.04 Term +  89045  89055   11  0  2   98   52    10 0.864  -3.24
 3.05 PlyA +  89157  89162    6                               1.05

 4.16 PlyA -  90488  90483    6                               1.05
 4.15 Term -  92833  92615  219  1  0   32   46   160 0.248   3.24
 4.14 Intr - 101908 101786  123  1  0   55   72   287 0.987  24.58
 4.13 Intr - 102170 102112   59  0  2   65   75    61 0.959   1.10
 4.12 Intr - 103340 103245   96  0  0   73  106   192 0.965  19.48
 4.11 Intr - 106344 106080  265  0  1  134  110   147 0.805  18.59
 4.10 Intr - 107550 107494   57  0  0   91  109    80 0.762   9.48
 4.09 Intr - 107758 107679   80  2  2  110   80    87 0.963   9.37
 4.08 Intr - 108288 108198   91  0  1   72   94   141 0.984  12.67
 4.07 Intr - 110342 110229  114  2  0   30   93   117 0.959   7.04
 4.06 Intr - 111129 111023  107  1  2  128   23   208 0.843  18.23
 4.05 Intr - 111458 111371   88  2  1    2  103   143 0.997   6.74
 4.04 Intr - 113503 113114  390  1  0  122  109   241 0.992  24.52
 4.03 Intr - 115060 114945  116  2  2   72  101   103 0.793  10.17
 4.02 Intr - 117014 116952   63  0  0  111  110    38 0.512   6.99
 4.01 Init - 122246 122093  154  2  1   62   65    92 0.286   2.75
 4.00 Prom - 128715 128676   40                              -5.66

 5.00 Prom + 131596 131635   40                              -4.76
 5.01 Init + 139445 139626  182  1  2   67   77   114 0.716   6.86
 5.02 Intr + 142964 143080  117  2  0   46   84    55 0.399   0.48
 5.03 Intr + 145480 145508   29  1  2  102  105     0 0.586   0.86
 5.04 Intr + 148401 148518  118  1  1   75   84    57 0.551   3.52
 5.05 Term + 151854 151917   64  0  1  101   39    70 0.116   0.76
 5.06 PlyA + 151932 151937    6                               1.05

 6.04 PlyA - 153487 153482    6                               1.05
 6.03 Term - 169640 169411  230  0  2  -39   40   370 0.761  16.29
 6.02 Intr - 178005 177783  223  0  1   59  101    40 0.001   0.10
 6.01 Init - 184600 184544   57  1  0   76  100    29 0.019   4.21
 6.00 Prom - 184765 184726   40                              -6.26

 7.05 PlyA - 184941 184936    6                               1.05
 7.04 Term - 191765 191364  402  2  0   47   36   568 0.061  42.65
 7.03 Intr - 196744 196538  207  1  0  -50   80   247 0.723   9.37
 7.02 Intr - 197203 196949  255  1  0  -44   53   465 0.520  27.44
 7.01 Init - 197528 197460   69  2  0   56   75   104 0.870   6.95
 7.00 Prom - 198239 198200   40                              -1.46


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100057  99998   60  1  0   92   47    81 0.840   2.20
S.002 Init - 170830 170821   10  1  1   71   82     9 0.854  -1.16
S.003 Intr + 177809 177928  120  1  0  129  113    97 0.987  16.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_1|137_aa
MATAAGATYFQRGSLFWFTVITLSFGYYTRMVKSEASNAATAYFRPARPLPSLVTVLGLG
YFAWVVFWPQSIPYQNLGPLGPFTQYLVDHHHTLLCNGHKGITSGRAQLLWFLQTFFFGI
ASLTILIAYKRKRQKQT

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_1|414_bp
atggctacggcagccggcgcgacctactttcagcgaggcagtctgttctggttcacagtc
atcaccctcagctttggctactacacaaggatggtgaagtcggaggccagcaatgcggct
accgcctatttccgtccagcaagacccttgccctctctggtcacagtcctggggctgggc
tacttcgcgtgggttgtcttctggcctcagagtatcccttatcagaaccttgggcccctg
ggccccttcactcagtacttggtggaccaccatcacaccctcctgtgcaatgggcataaa
ggcatcacaagtggtcgggctcagctactctggttcctacagactttcttctttgggata
gcgtctctcaccatcttgattgcttacaaacggaagcgccaaaaacaaacttga

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_2|134_aa
MELDEWERIGRDFKKAYKDGAEIPVSIWSMWALIKAALEPFQTEDEADSDEEEEDECKKL
TSDSECEEQLLEEIKEKKGKLRKACFTSPSAPSAELSEWPPPLSPLNGRENELAEKLTAP
VVATLKPGATGGVV

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_2|405_bp
atggagttggatgagtgggagagaattggaagagattttaaaaaggcgtataaagatgga
gcagaaattccagtttccatttggtcaatgtgggcactaataaaggcagctcttgagcca
tttcaaacagaagatgaggcagattcagatgaggaagaggaggacgagtgtaaaaaacta
acttcagattctgagtgtgaggaacagctactggaggagattaaagaaaagaaaggaaaa
cttagaaaagcatgttttactagcccgtcagctccatctgctgaattaagtgaatggcca
cctcctctctctccccttaatgggagagaaaatgaattagctgaaaaacttactgctcct
gtagttgcaacattaaaacctggagcaactggtggtgttgtataa

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_3|97_aa
MRPLLCALTGLALLRAAGSLAAAEPFSPPRGDSAQSTACDRHMAVQRRLDVMEEMVEKTV
DHLGTEVKGLLGLLEELAWNLPPGPFSPAPDLLGDGF

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_3|294_bp
atgcggcccctgctctgcgcgctgaccggactggccctgctccgcgccgcgggctctttg
gccgctgccgaacccttcagccctccgcgaggagactcagctcagagcacagcgtgtgac
agacacatggctgtgcaacgccgtctagatgtcatggaggagatggtagagaagaccgtg
gatcacctggggacagaggtgaaaggcctgctgggcctgctggaggagctggcctggaac
ctgcccccgggacccttcagccccgctcccgaccttctcggagatggcttctga

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_4|673_aa
MAALGCQERLLQGQPLAVASFEKMQRSQLPEDWTMSRFLNFQRKGGEECCFYLTMSYPGY
PPPPGGYPPAAPGGGPWGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFG
GANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGA
PVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPT
QFGSRGTITDAPGFDPLRDAEVLRKAMKGFGTDEQAIIDCLGSRSNKQRQQILLSFKTAY
GKASCGDLIKDLKSELSGNFEKTILALMKTPVLFDIYEIKEAIKGVGTDEACLIEILASR
SNEHIRELNRAYKAEFKKTLEEAIRSDTSGHFQRLLISLSQGNRDESTNVDMSLAQRDAQ
GCYLRPSRHFRGHLVQRLQIGKYFRLKPSEVYQALLGDLGLGSGCGLCHMCVFLSLQELY
AAGENRLGTDESKFNAVLCSRSRAHLVAVFNEYQRMTGRDIEKSICREMSGDLEEGMLAV
VKCLKNTPAFFAERLNKAMRGAGTKDRTLIRIMVSRSETDLLDIRSEYKRMYGKSLYHDI
SDCTGSDLKASTALALTQGLQLPLPGYCLCLLKALGLYNRLVAEPARLVSFPSEQQGPPG
PSWAQRCHLGASN

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_4|2022_bp
atggcagccctggggtgccaggaacgacttctccaaggacagccccttgcggtagcctct
tttgaaaaaatgcagaggtcacagttaccagaagactggaccatgagcagatttcttaat
tttcaaagaaaaggaggagaagaatgctgcttctatctaaccatgagctaccctggctat
cccccgcccccaggtggctacccaccagctgcaccaggtggtggtccctggggaggtgct
gcctaccctcctccgcccagcatgccccccatcgggctggataacgtggccacctatgcg
gggcagttcaaccaggactatctctcgggaatggcggccaacatgtctgggacatttgga
ggagccaacatgcccaacctgtaccctggggcccctggggctggctacccaccagtgccc
cctggcggctttgggcagcccccctctgcccagcagcctgttcctccctatgggatgtat
ccacccccaggaggaaacccaccctccaggatgccctcatatccgccatacccaggggcc
cctgtgccgggccagcccatgccaccccccggacagcagcccccaggggcctaccctggg
cagccaccagtgacctaccctggtcagcctccagtgccactccctgggcagcagcagcca
gtgccgagctacccaggatacccggggtctgggactgtcacccccgctgtgcccccaacc
cagtttggaagccgaggcaccatcactgatgctcccggctttgaccccctgcgagatgcc
gaggtcctgcggaaggccatgaaaggcttcgggacggatgagcaggccatcattgactgc
ctggggagtcgctccaacaagcagcggcagcagatcctactttccttcaagacggcttac
ggcaaggcgagctgcggggatttgatcaaagatctgaaatctgaactgtcaggaaacttt
gagaagacaatcttggctctgatgaagaccccagtcctctttgacatttatgagataaag
gaagccatcaagggggttggcactgatgaagcctgcctgattgagatcctcgcttcccgc
agcaatgagcacatccgagaattaaacagagcctacaaagcagaattcaaaaagaccctg
gaagaggccattcgaagcgacacatcagggcacttccagcggctcctcatctctctctct
cagggaaaccgtgatgaaagcacaaacgtggacatgtcactcgcccagagagatgcccag
ggctgctacctgaggcctagcaggcactttagaggccatctagttcagaggttgcaaatt
ggcaaatactttaggctcaaaccttcagaagtttaccaggctctcctgggtgacctgggc
ctggggtctgggtgtggcctgtgccacatgtgcgtcttcctctctctccaggagctgtat
gcggccggggagaaccgcctgggaacagacgagtccaagttcaatgcggttctgtgctcc
cggagccgggcccacctggtagcagttttcaatgagtaccagagaatgacaggccgggac
attgagaagagcatctgccgggagatgtccggggacctggaggagggcatgctggccgtg
gtgaaatgtctcaagaataccccagccttctttgcggagaggctcaacaaggccatgagg
ggggcaggaacaaaggaccggaccctgattcgcatcatggtgtctcgcagcgagaccgac
ctcctggacatcagatcagagtataagcggatgtacggcaagtcgctgtaccacgacatc
tcggactgcactgggtcagacctgaaagccagcacagcactggctctcacccaaggcctg
cagttaccactccctggctactgcctgtgtctgctcaaggccctggggctctacaatcgg
ctggtggcagagccagccaggcttgtgtccttcccttcagaacagcaaggtcctccaggc
cccagctgggcccaaaggtgccatctgggagccagcaactag

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_5|169_aa
MSPVSRMQLEVQGPAAHSGGENTFTWEWADPSAAGILSCVKQSGAKSHSHWATEEQHENR
RWRGEDDDEKLNPTAKIRKGMHASIISNKQDAKNKIKYIWLIFLYSAVRGNTLQHKECLE
ERGPVNPLESPTIDCRIKGMRKAMRASEGDREGQLLRKAHFSPWLSECS

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_5|510_bp
atgtccccagtcagccgcatgcaactggaagttcaaggacctgcagctcactctggagga
gaaaacaccttcacttgggaatgggctgacccttctgcagctggcatcctaagctgtgtc
aagcagtctggagccaagagtcactcacactgggccactgaggaacagcatgaaaacaga
aggtggcgtggggaagatgacgatgagaaacttaacccaacagcaaaaatcaggaaagga
atgcatgcaagtataataagtaataagcaagatgcaaagaataaaatcaagtatatctgg
ctcatcttcctttactcagctgttcgagggaacaccttgcagcacaaagaatgccttgag
gaaaggggccctgttaatcccctggaatccccaacaattgactgccgcataaaaggaatg
aggaaagcaatgagagccagtgaaggcgaccgcgaaggccagcttcttcgaaaggcccat
ttttctccgtggctgagcgaatgctcctag

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_6|169_aa
MSKGESRKCNEENVSKSSKPPYETWGRSTGSYSGAPDPFHLPSLTFLGDLHETVTDFTCC
CSSLVSWSLSRDRNCGVRTINTFTTCRTRAEAYERGRRRRRRRRRRRRRRRRKEEKKKKK
KKKEKEKEKEKEKEKKRKEEEEEEEEEEEEEEEEEEKMYAYGCPSQKNK

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_6|510_bp
atgagcaagggtgaaagtagaaaatgcaatgaggaaaatgtatccaagtcttcaaagcca
ccctatgagacatggggcagaagcactgggagctattcaggggcaccagaccccttccat
ctgccctcactcaccttccttggggacttgcatgagactgtcactgactttacatgctgc
tgcagctccttggtcagctggtccttgtcacgggacagaaactgtggggtcaggacaatc
aacaccttcacgacctgcagaacaagggcagaggcttatgaaagaggaagaagaagaagg
agaaggagaaggagaaggagaaggagaagaagaagaaaagaagaaaagaagaagaagaag
aagaagaaggagaaggagaaggagaaggagaaggagaaggagaagaaaagaaaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaaaatgtatgca
tatggatgtccaagccagaaaaacaaataa

>gi568815588r:80055856_80272861|GENSCAN_predicted_peptide_7|310_aa
MEIIEVTEEIHVKVVIEGPDATQEVDEVPEDQQLQEVDEVPEDLQLQGVDEVPEDQQLQE
VNEVPEDQQLQKVDEVPEDHQLQEVDEVPEDHQLREVDEVPEDRQLQEELDKAPENNRVE
EVVKFSGDSLVQEVAEFPEDSRVEVVEFPEDSPVEEFVEVPENLQMEGVFEFPDNTQCSA
LRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNI
RRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKETEQKYDCGEEILITVLSAMTEE
AAVAIKAMAK

>gi568815588r:80055856_80272861|GENSCAN_predicted_CDS_7|933_bp
atggagattattgaagtaaccgaggagattcatgtgaaggtggttattgaggggccagac
gccacccaggaggtggatgaggtcccagaggaccaacagctgcaggaggtggatgaggtc
ccagaagacctacagctgcagggtgtggatgaagtcccagaggaccaacagctgcaggag
gtgaatgaggtcccggaagaccaacagctgcaaaaggtggatgaggtcccggaggaccac
cagctgcaggaggtggatgaggttccggaggaccaccagcttcgagaggtggatgaggtc
ccggaggaccgacagctgcaggaggagctggataaggccccagagaacaatcgagtggag
gaggtggttaagttttcaggggactctctagtgcaggaggtggctgagttcccagaggac
agtcgagtggaggtggttgaattcccagaggactctccagtggaggagtttgttgaggtc
ccagaaaaccttcagatggagggagtgtttgagttcccagacaacacccagtgctcagca
ttacgtaagaatggctttgtggtgctcaaaggctggccatgtaagatcgtggagatgtct
gcttcgaagactggcaagcacggccacgccaaggtccatctggttggtattgacatcttt
actgggaagaaatatgaagatatctgcccgtcaactcataatatggatgtccccaacatc
agaaggaatgacttccagctgattggcatccaggatgggtacctatcactgctccaggac
agcggggaggtaccagaggaccttcgtctccctgagggagaccttggcaaggagactgag
cagaagtacgactgtggagaagagatcctgatcacggtgctgtctgccatgacagaggag
gcagctgttgcaatcaaggccatggcaaaataa