Result of FASTA (ccds) for pF1KB5164
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5164, 427 aa
  1>>>pF1KB5164 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0476+/-0.000838; mu= 5.1882+/- 0.050
 mean_var=158.0293+/-31.421, 0's: 0 Z-trim(113.3): 24  B-trim: 57 in 1/52
 Lambda= 0.102025
 statistics sampled from 13927 (13947) to 13927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.428), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS12775.1 IRF3 gene_id:3661|Hs108|chr19          ( 427) 3028 457.3 1.3e-128
CCDS59409.1 IRF3 gene_id:3661|Hs108|chr19          ( 452) 2343 356.5 3.1e-98
CCDS59408.1 IRF3 gene_id:3661|Hs108|chr19          ( 281) 2002 306.2 2.7e-83
CCDS56099.1 IRF3 gene_id:3661|Hs108|chr19          ( 300) 1422 220.8 1.4e-57
CCDS59407.1 IRF3 gene_id:3661|Hs108|chr19          ( 154)  688 112.6 2.7e-25
CCDS10956.1 IRF8 gene_id:3394|Hs108|chr16          ( 426)  476 81.7 1.6e-15
CCDS5808.1 IRF5 gene_id:3663|Hs108|chr7            ( 498)  393 69.5 8.4e-12
CCDS43645.1 IRF5 gene_id:3663|Hs108|chr7           ( 514)  383 68.0 2.4e-11
CCDS1492.1 IRF6 gene_id:3664|Hs108|chr1            ( 467)  373 66.5 6.1e-11


>>CCDS12775.1 IRF3 gene_id:3661|Hs108|chr19               (427 aa)
 initn: 3028 init1: 3028 opt: 3028  Z-score: 2422.4  bits: 457.3 E(32554): 1.3e-128
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
              370       380       390       400       410       420

              
pF1KB5 FQGPGES
       :::::::
CCDS12 FQGPGES
              

>>CCDS59409.1 IRF3 gene_id:3661|Hs108|chr19               (452 aa)
 initn: 2343 init1: 2343 opt: 2343  Z-score: 1877.2  bits: 356.5 E(32554): 3.1e-98
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
       :::::::::::::::::::::::::::                                 
CCDS59 PNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPG
              310       320       330       340       350       360

>>CCDS59408.1 IRF3 gene_id:3661|Hs108|chr19               (281 aa)
 initn: 2002 init1: 2002 opt: 2002  Z-score: 1608.9  bits: 306.2 E(32554): 2.7e-83
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 281 aa overlap (147-427:1-281)

        120       130       140       150       160       170      
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
                                     ::::::::::::::::::::::::::::::
CCDS59                               MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
                                             10        20        30

        180       190       200       210       220       230      
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
              160       170       180       190       200       210

        360       370       380       390       400       410      
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
              220       230       240       250       260       270

        420       
pF1KB5 EGMDFQGPGES
       :::::::::::
CCDS59 EGMDFQGPGES
              280 

>>CCDS56099.1 IRF3 gene_id:3661|Hs108|chr19               (300 aa)
 initn: 1422 init1: 1422 opt: 1422  Z-score: 1147.1  bits: 220.8 E(32554): 1.4e-57
Smith-Waterman score: 1841; 70.3% identity (70.3% similar) in 427 aa overlap (1-427:1-300)

               10        20        30        40        50        60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
       ::::::::::::::::::::                                        
CCDS56 PFPNLGPSENPLKRLLVPGE----------------------------------------
              190       200                                        

              250       260       270       280       290       300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
                                                                   
CCDS56 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
                                  :::::::::::::::::::::::::::::::::
CCDS56 ---------------------------DLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
                                         210       220       230   

              370       380       390       400       410       420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
           240       250       260       270       280       290   

              
pF1KB5 FQGPGES
       :::::::
CCDS56 FQGPGES
           300

>>CCDS59407.1 IRF3 gene_id:3661|Hs108|chr19               (154 aa)
 initn: 1067 init1: 685 opt: 688  Z-score: 567.5  bits: 112.6 E(32554): 2.7e-25
Smith-Waterman score: 815; 54.8% identity (54.8% similar) in 281 aa overlap (147-427:1-154)

        120       130       140       150       160       170      
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
                                     ::::::::::::::::::::::::::::::
CCDS59                               MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
                                             10        20        30

        180       190       200       210       220       230      
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
       ::::::::::::::::::::::::                                    
CCDS59 DNPTPFPNLGPSENPLKRLLVPGE------------------------------------
               40        50                                        

        240       250       260       270       280       290      
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
                                                                   
CCDS59 ------------------------------------------------------------
                                                                   

        300       310       320       330       340       350      
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
                                      :::::::::::::::::::::::::::::
CCDS59 -------------------------------DLITFTEGSGRSPRYALWFCVGESWPQDQ
                                          60        70        80   

        360       370       380       390       400       410      
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
            90       100       110       120       130       140   

        420       
pF1KB5 EGMDFQGPGES
       :::::::::::
CCDS59 EGMDFQGPGES
           150    

>>CCDS10956.1 IRF8 gene_id:3394|Hs108|chr16               (426 aa)
 initn: 263 init1: 196 opt: 476  Z-score: 392.4  bits: 81.7 E(32554): 1.6e-15
Smith-Waterman score: 480; 28.1% identity (54.3% similar) in 409 aa overlap (7-387:9-390)

                 10        20        30        40         50       
pF1KB5   MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-DFGIFQAW
               :.  ::. :.: ..  :. : :. .. :::::::. .:: .:: : .::.::
CCDS10 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW
               10        20        30        40        50        60

        60        70        80        90        100       110      
pF1KB5 AEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSK-DPHDPHKIYEFVNS----
       :   : .  : :: .  :::  .: :::..  .. . :::. :  .:.:.:..:      
CCDS10 AVFKGKFKEG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQK
               70         80        90       100       110         

               120       130         140       150       160       
pF1KB5 ---GVGDFSQPDTSPDTNGGGSTSDT--QEDILDELLGNMVLAPLPDPGPPSLAVAPEPC
          ::.  .  .   . . : :  :   .:  .:. .: .  .: :          :: :
CCDS10 CKLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSP----------PEAC
     120       130       140       150       160                   

       170               180       190       200       210         
pF1KB5 PQPL------RSPSLDNP--TPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQT
        . :      ..::   :  : . .    .. ......         . .: :. : : :
CCDS10 RSQLLPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVI---------SFYYGGKLVGQAT
     170       180       190       200                210       220

     220       230       240               250       260       270 
pF1KB5 ISCPEGLRLVGSEVGDRTLPGWPVTLPD--------PGMSLTDRGVMSYVRHVLSCLGGG
        .:::: ::  :. :   :::  .  :.        :. .. ..   . .:.... :  :
CCDS10 TTCPEGCRLSLSQPG---LPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERG
              230          240       250       260       270       

             280       290       300       310       320       330 
pF1KB5 LALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLIT
       . :  . : ....::  :.     : . .  .:. :. .. .:.   ::: . :. .:  
CCDS10 VLLHSSRQGVFVKRL--CQGRVFCSGNAVVCKGR-PN-KLERDEVVQVFDTSQFFRELQQ
       280       290         300        310        320       330   

             340       350       360       370        380       390
pF1KB5 FTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMA-RVGGASSLENT
       : ...:: :   . .: :: .:.  :  ..:..:..    .: :.: : .  ::.:.   
CCDS10 FYNSQGRLPDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQA
           340       350       360       370       380       390   

              400       410       420       
pF1KB5 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
                                            
CCDS10 PEEPPPDQVFRMFPDICASHQRSFFRENQQITV    
           400       410       420          

>>CCDS5808.1 IRF5 gene_id:3663|Hs108|chr7                 (498 aa)
 initn: 557 init1: 159 opt: 393  Z-score: 325.3  bits: 69.5 E(32554): 8.4e-12
Smith-Waterman score: 645; 32.3% identity (54.6% similar) in 458 aa overlap (3-409:10-459)

                        10        20        30        40         50
pF1KB5        MGTP--KPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D
                ::  . :. ::::.:..  :  :. :::  .  : :::.:. :.  .:. :
CCDS58 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
               10        20        30        40        50        60

               60        70        80        90        100         
pF1KB5 FGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEF
         ::.:::. :: :. : :. :   :: :.: :::... .::  :  .: : .:.:::: 
CCDS58 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
               70        80        90       100       110       120

     110        120       130       140       150                  
pF1KB5 VNSGVGDF-SQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA------PLPDPG---PPS
        ..: .   :::    : . :..  . .:. :...: .. :.      :  .:    ::.
CCDS58 CSNGPAPTDSQPPE--DYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPT
              130         140       150       160       170        

     160                 170                   180         190     
pF1KB5 LAVA----------PEPCPQPLRSPSLD------------NPTPFP-NLGPS-ENPLKRL
       :             : : :.::  :  .            .: :.: .: :. :. :  :
CCDS58 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDL
      180       190       200       210       220       230        

         200          210       220       230           240        
pF1KB5 LVPGEEW---EFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRT----LPGWPVTL---
       :.  .     ..:.   ::::     ::: :.: ::  :..        : : :..:   
CCDS58 LISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFG-PISLEQV
      240       250       260       270       280       290        

           250       260       270       280       290       300   
pF1KB5 --PDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNS
         :.:    .:.  . :. ..:. :  :: :   :: :.: :: .:...:.       .:
CCDS58 RFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDS
       300       310        320       330       340       350      

           310       320       330        340       350       360  
pF1KB5 GHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWFCVGESWPQDQPWTKRL
         .:   . .. .  .:.:  :. .:: : .: ..  : . ..:: :: ::. .:  :.:
CCDS58 CPNP---IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKL
        360          370       380       390       400       410   

            370       380       390       400       410       420  
pF1KB5 VMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQ
       . :.:::.  : :.::   :  :   ... :.:::    .   .:.:             
CCDS58 ITVQVVPVAARLLLEMFS-GELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQ
           420       430        440       450       460       470  

                                 
pF1KB5 GPGES                     
                                 
CCDS58 PVAQAPPGAGLGVGQGPWPMHPAGMQ
            480       490        

>>CCDS43645.1 IRF5 gene_id:3663|Hs108|chr7                (514 aa)
 initn: 562 init1: 170 opt: 383  Z-score: 317.2  bits: 68.0 E(32554): 2.4e-11
Smith-Waterman score: 620; 32.7% identity (53.2% similar) in 462 aa overlap (3-397:10-463)

                        10        20        30        40         50
pF1KB5        MGTP--KPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D
                ::  . :. ::::.:..  :  :. :::  .  : :::.:. :.  .:. :
CCDS43 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
               10        20        30        40        50        60

               60        70        80        90        100         
pF1KB5 FGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEF
         ::.:::. :: :. : :. :   :: :.: :::... .::  :  .: : .:.:::: 
CCDS43 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
               70        80        90       100       110       120

     110        120       130       140       150           160    
pF1KB5 VNSGVGDF-SQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGP---P-SLA---
        ..: .   :::    : . :..  . .:. :...: .. :.   . ::   : ::    
CCDS43 CSNGPAPTDSQPPE--DYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKED
              130         140       150       160       170        

             170         180                    190                
pF1KB5 VAPEPCPQP--LRSPSLDNPT-------------PFPNLGPSENP------LKRLLVPG-
       :   :  ::  :: :.:. ::             : :   :  ::      :...: :: 
CCDS43 VKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGP
      180       190       200       210       220       230        

              200                     210       220       230      
pF1KB5 ---------EEW--------------EFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
                :.               ..:.   ::::     ::: :.: ::  :..   
CCDS43 LPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEAT
      240       250       260       270       280       290        

            240            250       260       270       280       
pF1KB5 T----LPGWPVTL-----PDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLG
            : : :..:     :.:    .:.  . :. ..:. :  :: :   :: :.: :: 
CCDS43 QEQVELFG-PISLEQVRFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLC
      300        310       320        330       340       350      

       290       300       310       320       330        340      
pF1KB5 HCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWF
       .:...:.       .:  .:   . .. .  .:.:  :. .:: : .: ..  : . ..:
CCDS43 QCKVFWSGPCASAHDSCPNP---IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFF
        360       370          380       390       400       410   

        350       360       370       380       390       400      
pF1KB5 CVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSD
       : :: ::. .:  :.:. :.:::.  : :.::   :  :   ... :.:::         
CCDS43 CFGEEWPDRKPREKKLITVQVVPVAARLLLEMFS-GELSWSADSIRLQISNPDLKDRMVE
           420       430       440        450       460       470  

        410       420                            
pF1KB5 QYKAYLQDLVEGMDFQGPGES                     
                                                 
CCDS43 QFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ
            480       490       500       510    

>>CCDS1492.1 IRF6 gene_id:3664|Hs108|chr1                 (467 aa)
 initn: 502 init1: 169 opt: 373  Z-score: 309.9  bits: 66.5 E(32554): 6.1e-11
Smith-Waterman score: 623; 31.1% identity (58.1% similar) in 453 aa overlap (7-422:9-446)

                 10        20        30        40        50        
pF1KB5   MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFG-IFQAW
               :. ::::.:.: :   :. :....  ::.:::::. :.. :::. . ::.::
CCDS14 MALHPRRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAW
               10        20        30        40        50        60

        60        70        80        90        100       110      
pF1KB5 AEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEFVNSGVGD
       :  :: :  : : ::   :: ..: :::... . :  : .:. : .: :::.     : :
CCDS14 AVETGKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCD
               70        80        90       100       110          

        120          130            140       150       160        
pF1KB5 FSQPDTS---PDTNGGG----STSDT-QEDILDELLGNMVLAPLPDPGPPSLAVAPEP-C
       . ::. :   : ..:..    . .:. .::  :::  ..  .:. :  :  : .   :  
CCDS14 IPQPQGSIINPGSTGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQDTFP-FLNINGSPMA
         120       130       140       150       160        170    

       170       180               190       200              210  
pF1KB5 PQPLRSPSLDNPTP---FPNLGPSE-----NPLKRLLVPGEEW-------EFEVTAFYRG
       :  . . :. : .:   .:.  : :      :.. .    : :       ....   :::
CCDS14 PASVGNCSVGNCSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRG
          180       190       200       210       220       230    

             220       230           240           250       260   
pF1KB5 RQVFQ-QTISCPEGLRLVGSEVG----DRTLPGWPVTLPD---PG-MSLTDRGVMSYVRH
       ..  : .:.: :.: ::  ...:    .. : : ::.: .   ::   .:..    .. .
CCDS14 KEYGQTMTVSNPQGCRLFYGDLGPMPDQEELFG-PVSLEQVKFPGPEHITNEKQKLFTSK
          240       250       260        270       280       290   

           270       280       290       300       310       320   
pF1KB5 VLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLG
       .:. .  :: :  .:. ..: :: .:..::  :    : :  .:.  . ..:.  .: : 
CCDS14 LLDVMDRGLILEVSGHAIYAIRLCQCKVYW--SGPCAP-SLVAPN-LIERQKKVKLFCLE
           300       310       320          330        340         

           330        340       350       360       370       380  
pF1KB5 PFIVDLITFTEGS-GRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVG
        :. :::.  .:.  ..: . ...: :: ::. .:  ..:..:.:.:.  : . ::    
CCDS14 TFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPLERKLILVQVIPVVARMIYEMFSGD
     350       360       370       380       390       400         

             390       400       410       420                     
pF1KB5 GASSLEN-TVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES              
        . :... .: :.::.       .:.  : :..: . .. :                   
CCDS14 FTRSFDSGSVRLQISTPD----IKDNIVAQLKQLYRILQTQESWQPMQPTPSMQLPPALP
     410       420           430       440       450       460     

CCDS14 PQ
         




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:14:55 2016 done: Thu Nov  3 16:14:56 2016
 Total Scan time:  3.480 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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