Result of FASTA (ccds) for pF1KB4712
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4712, 247 aa
  1>>>pF1KB4712 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7743+/-0.00102; mu= 12.2309+/- 0.061
 mean_var=75.0864+/-14.858, 0's: 0 Z-trim(103.4): 33  B-trim: 53 in 1/49
 Lambda= 0.148011
 statistics sampled from 7381 (7396) to 7381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.227), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7           ( 247) 1582 347.3 5.7e-96
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22         ( 246) 1387 305.6   2e-83
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20         ( 246) 1164 258.0 4.2e-69
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8           ( 245) 1153 255.7 2.1e-68
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2          ( 245) 1091 242.4 2.1e-64
CCDS288.1 SFN gene_id:2810|Hs108|chr1              ( 248) 1031 229.6 1.5e-60
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17         ( 255) 1003 223.6 9.7e-59


>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7                (247 aa)
 initn: 1582 init1: 1582 opt: 1582  Z-score: 1836.4  bits: 347.3 E(32554): 5.7e-96
Smith-Waterman score: 1582; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
              190       200       210       220       230       240

              
pF1KB4 DGGEGNN
       :::::::
CCDS55 DGGEGNN
              

>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22              (246 aa)
 initn: 1387 init1: 1387 opt: 1387  Z-score: 1611.4  bits: 305.6 E(32554): 2e-83
Smith-Waterman score: 1387; 87.0% identity (95.9% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
       : :::::.:.::::::::::::::.::: :::::::::::.:::::::::::::::::::
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       :::::::::: :::::::.: :.:::::::::::.::.:::::::..:::::.. :::::
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::::::::::::::::::.:::. .:::.:: ::.:: :::::.::::::::::::::.:
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       :::::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::.
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
              190       200       210       220       230       240

              
pF1KB4 DGGEGNN
       ..:::: 
CCDS13 EAGEGN 
              

>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20              (246 aa)
 initn: 1021 init1: 669 opt: 1164  Z-score: 1354.1  bits: 258.0 E(32554): 4.2e-69
Smith-Waterman score: 1164; 75.4% identity (89.5% similar) in 248 aa overlap (2-247:3-246)

                10        20        30        40        50         
pF1KB4  MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSS
         .:. .:::::.:::::::::::::::: ::: .. :::::::::::::::::::::::
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 WRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYES
       :::::::::::  . :::: .: . :::::: ::. .:.::: :::.::: :   :: ::
CCDS13 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNA--TQPES
               70          80        90       100       110        

     120       130       140       150       160       170         
pF1KB4 KVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNY
       :::::::::::.:::.:::.:... :.: .:..::.:: ::::..::::::::::::::.
CCDS13 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KB4 SVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
       ::::::: :.::.:: :::::::.::::::::::.:::::::::::::::::::::..: 
CCDS13 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
        180       190       200       210       220       230      

     240         
pF1KB4 DDG--GEGNN
       :.:  :::.:
CCDS13 DEGDAGEGEN
        240      

>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8                (245 aa)
 initn: 998 init1: 653 opt: 1153  Z-score: 1341.4  bits: 255.7 E(32554): 2.1e-68
Smith-Waterman score: 1153; 74.8% identity (89.4% similar) in 246 aa overlap (2-245:1-242)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
        .:...:::::.::::::::::::: ::.::: .  ::::::::::::::::::::::::
CCDS62  MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       ::.:::::::  .: ::: .:.: :::::: ::. .:.::::::...:: : :  : :::
CCDS62 RVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESK
      60          70        80        90       100       110       

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::::::::::::::::::.:. .  .:..:..::.:: ::::..::::::::::::::.:
CCDS62 VFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       :::::: :.::.:: :::::::.::::::::.:.:::::::::::::::::::::: : :
CCDS62 VFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD
         180       190       200       210       220       230     

                 
pF1KB4 DG--GEGNN 
       ..  :::   
CCDS62 EAEAGEGGEN
         240     

>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2               (245 aa)
 initn: 951 init1: 629 opt: 1091  Z-score: 1269.8  bits: 242.4 E(32554): 2.1e-64
Smith-Waterman score: 1091; 70.3% identity (87.0% similar) in 246 aa overlap (2-245:1-242)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
        ... .:.:::.::::::::::::. :: ::: .  ::::::::::::::::::.:::.:
CCDS16  MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       ::::::::::  : ..::..... ::::.:.::...:  :: :::.::: :   :. :::
CCDS16 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIAN--ATNPESK
      60          70        80        90       100         110     

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::::::::::.::::::: :. :  ....:. ::.:: .:::..::::::::::::::.:
CCDS16 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       :::::: : :: :: :::::::.:::::::::::::::::::::::::::::::::.  .
CCDS16 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
         180       190       200       210       220       230     

                 
pF1KB4 --DGGEGNN 
         :..::   
CCDS16 ECDAAEGAEN
         240     

>>CCDS288.1 SFN gene_id:2810|Hs108|chr1                   (248 aa)
 initn: 597 init1: 597 opt: 1031  Z-score: 1200.5  bits: 229.6 E(32554): 1.5e-60
Smith-Waterman score: 1031; 65.4% identity (89.3% similar) in 243 aa overlap (2-244:1-241)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
        ..: .:.:::.::::::::.:::: ::...: .: :: :::::::::::::::..:..:
CCDS28  MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       ::.::::::.. .:.:.:   :: ::::.: ::..::. ::.:::..:::. ...  ::.
CCDS28 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDA--ESR
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::::::::::::::::::::. .  ...:...::.:: .:::..: ::.:::::::::.:
CCDS28 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       ::.::: :.::.:  ::::.::.:.:.: ::.::::::::::::::::::::::.:.  .
CCDS28 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
       180       190       200       210       220       230       

                  
pF1KB4 DGGEGNN    
       .:::       
CCDS28 EGGEAPQEPQS
       240        

>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17              (255 aa)
 initn: 1024 init1: 584 opt: 1003  Z-score: 1168.0  bits: 223.6 E(32554): 9.7e-59
Smith-Waterman score: 1003; 64.2% identity (83.3% similar) in 246 aa overlap (1-246:1-243)

               10        20        30        40        50        60
pF1KB4 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
       : :::.:: .:.:::::::::.:. .::.:. ..  :. :::::::::::::.::::.::
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
       :.:::::::    :.: :..:.: ::. .: ::. .: :.:..::..::   .    :::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTG--ESK
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB4 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
       ::: ::::::.::::: :::. :  ..:.:  ::. : .:.  .. ::::::::::::.:
CCDS11 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB4 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
       :::::: :.:..::.:::.::::::::::::.:.::::::::::::::::::::::.: :
CCDS11 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD
      180       190       200       210       220       230        

                         
pF1KB4 DGGEGNN           
        : : :            
CCDS11 -GEEQNKEALQDVEDENQ
       240       250     




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:26:48 2016 done: Thu Nov  3 15:26:49 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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