GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:19:43

Sequence gi568815583r:36794757_37198200 : 403444 bp : 38.18% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.10 PlyA -    937    932    6                               1.05
 1.09 Term -  13708  13589  120  1  0  102   37    90 0.584   2.79
 1.08 Intr -  16421  16392   30  2  0   77   86    39 0.467   0.01
 1.07 Intr -  16829  16698  132  2  0   19   64   124 0.726   3.02
 1.06 Intr -  22532  22421  112  1  1   96  115    46 0.816   7.56
 1.05 Intr -  23369  23180  190  0  1   83   81   229 0.668  19.42
 1.04 Intr -  31109  31016   94  2  1   11   94    79 0.074  -0.58
 1.03 Intr -  31413  31194  220  2  1   84   91    70 0.069   4.28
 1.02 Intr -  42310  42100  211  2  1   50   31   144 0.013   1.95
 1.01 Init -  44372  44336   37  2  1   88  106    -1 0.458   1.92
 1.00 Prom -  45529  45490   40                              -8.05

 2.08 PlyA -  46391  46386    6                               1.05
 2.07 Term -  47370  47193  178  2  1   78   39   153 0.669   5.58
 2.06 Intr -  51244  51199   46  2  1  108   96    58 0.643   5.15
 2.05 Intr -  56849  56801   49  2  1   97   37    40 0.236  -2.87
 2.04 Intr -  67365  67261  105  0  0  103  115    95 0.449  13.19
 2.03 Intr -  85554  85441  114  0  0   83   37    59 0.404   0.02
 2.02 Intr -  85790  85688  103  1  1   67   78    90 0.768   5.16
 2.01 Init -  86213  86035  179  2  2   54   75   110 0.800   5.08
 2.00 Prom -  86859  86820   40                              -9.55

 3.19 PlyA -  86976  86971    6                               1.05
 3.18 Term -  88195  87974  222  1  0    7   55   202 0.272   4.73
 3.17 Intr -  91184  91071  114  2  0   45   67   100 0.092   3.32
 3.16 Intr -  97703  97441  263  0  2  121   34    97 0.027   3.88
 3.15 Intr - 100484 100395   90  0  0   69   96    88 0.406   6.75
 3.14 Intr - 102471 102328  144  1  0  100  -22   134 0.685   2.93
 3.13 Intr - 103232 103115  118  2  1   53   70    99 0.919   3.72
 3.12 Intr - 103664 103608   57  2  0   58  105    59 0.787   2.76
 3.11 Intr - 106336 106244   93  1  0   55   93    72 0.480   3.64
 3.10 Intr - 121111 121057   55  0  1   72   92    44 0.006   1.26
 3.09 Intr - 128900 128828   73  0  1  128   37    64 0.026   2.85
 3.08 Intr - 144201 144069  133  0  1   24   57   110 0.002   0.80
 3.07 Intr - 148402 148342   61  0  1   81   89    25 0.239  -0.28
 3.06 Intr - 155644 155568   77  1  2   53  105    96 0.173   5.19
 3.05 Intr - 192794 192718   77  0  2   50   98    58 0.013   1.32
 3.04 Intr - 208363 208264  100  1  1   39  107    55 0.202   1.26
 3.03 Intr - 232719 232630   90  0  0   45  110    44 0.132   1.57
 3.02 Intr - 242203 242058  146  2  2   94   98   115 0.679  12.18
 3.01 Init - 245821 245677  145  1  1   57   44    83 0.136   1.13
 3.00 Prom - 250543 250504   40                              -7.45

 4.10 PlyA - 250825 250820    6                              -0.45
 4.09 Term - 251494 251310  185  2  2   83   54   184 0.248  11.22
 4.08 Intr - 287484 287386   99  1  0   80   74    56 0.162   2.56
 4.07 Intr - 294462 294360  103  0  1   63   65    51 0.263  -0.87
 4.06 Intr - 298974 298825  150  0  0  101  103   150 0.746  17.24
 4.05 Intr - 299919 299771  149  1  2  107  121   -39 0.306   0.33
 4.04 Intr - 300776 300620  157  2  1  102   40    66 0.156   1.86
 4.03 Intr - 300858 300808   51  0  0  116   87    43 0.282   5.19
 4.02 Intr - 301674 301533  142  2  1   34   42   163 0.257   5.73
 4.01 Init - 303416 303211  206  2  2   87   32   186 0.227   9.40
 4.00 Prom - 305279 305240   40                             -12.43

 5.00 Prom + 306106 306145   40                              -7.45
 5.01 Init + 306841 307041  201  0  0   79   -7   174 0.380   5.92
 5.02 Intr + 314937 315138  202  2  1   42   91   186 0.328  12.24
 5.03 Intr + 317646 317701   56  1  2   86   81    66 0.562   3.48
 5.04 Intr + 345388 345561  174  0  0   83   58    65 0.273   2.21
 5.05 Intr + 351032 351206  175  1  1   49  110   107 0.881   7.59
 5.06 Intr + 352392 352509  118  1  1   61   86   123 0.840   8.00
 5.07 Intr + 356027 356169  143  2  2   76   27    56 0.088  -2.62
 5.08 Term + 368442 368650  209  1  2   26   47   149 0.020   1.12
 5.09 PlyA + 368796 368801    6                               1.05

 6.05 PlyA - 370287 370282    6                               1.05
 6.04 Term - 370949 370746  204  2  0   58   35   144 0.458   2.49
 6.03 Intr - 372217 372028  190  0  1   84   19    87 0.229   0.07
 6.02 Intr - 382571 382436  136  0  1   46   90    50 0.001  -0.29
 6.01 Init - 403052 403043   10  2  1  100   98     4 0.394   3.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 128900 128824   77  0  2  128   55    70 0.865   4.72
S.002 Init + 212374 212496  123  0  0   55   76    80 0.811   3.72
S.003 Term + 219848 219988  141  1  0   84   43   128 0.849   4.85


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_1|381_aa
MDEHMVNISYLKKNGHLKIEIHREITHDNKGRDWSNEAASQGMLKIVSKPPETRRGKEGF
PYSSQRESGFANALILDFWSLEFELALLQSSTAPGCWIAVAVPTFYPEATTNGRREVVSP
FVVLNQQRIPFPEALQKTFYLVSSNLHHMPALHQLMKVHGHLRDREHLNESDLGAERKCG
SGDEWLLGRLAAEFIVGRKYKLLWKIWCSSFGDICLAISITNGEEVVVKPESQGQASPVA
VQEQALQDASRTLIHQYDYTFDWTKLKQKAAQQAASSSGRGSRPKPQQREKEPKSNEKMQ
GTCPCGGKLAKANAGEDDMEKVKSEVRKHMEAGESSLADNEQDLQGQAMLWHKVTMFVGK
QALSRMPLSRLQSSSWINPYQ

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_1|1146_bp
atggatgagcatatggtgaacattagttatcttaaaaaaaacggtcatctgaagatagag
atacacagggagataacgcatgataacaaaggcagagattggagtaatgaagctgcaagc
caaggaatgctaaagattgtcagcaaaccaccagaaactagaagaggcaaggaagggttc
ccttacagttctcagagggagagtggctttgccaatgccttgattttagacttctggtct
ctggaatttgagttggctcttctgcagtctagcactgctcctggttgctggattgctgta
gcagttcccacattttatccagaggctaccacaaatggtagaagagaggttgtttctccc
tttgtggttcttaatcagcaaagaatacctttcccagaagccctccagaagactttctat
ttggtttcatccaatttgcatcatatgcccgcgctacaccagttaatgaaagtacatggc
catctaagggacagggaacacctaaatgaaagtgaccttggggcagaaagaaagtgtggc
agtggtgatgagtggctgctgggacggctagcagcagaattcattgtcggaaggaaatat
aaactgctttggaagatctggtgtagctccttcggagacatctgtctggcgatcagcatc
accaacggtgaagaagtggtagtgaagccagaatctcagggccaggcatccccagttgct
gtacaagagcaggctttacaagatgcttcaaggaccctgatccatcaatatgactacaca
tttgattggacaaagttaaagcagaaagcagcacagcaggcagcctcttctagtgggagg
ggcagcaggcccaaaccccaacagagagaaaaagagcccaagagtaatgagaaaatgcag
ggtacatgtccatgtggagggaaactggcaaaggccaacgcaggggaagatgacatggaa
aaagtgaaaagtgaagtgagaaagcatatggaagcaggggaatcaagccttgcagataat
gaacaggatcttcagggtcaagctatgctgtggcataaggtgacaatgttcgtggggaaa
caggctttgagcaggatgcccctttcccggttgcagtccagctcctggataaatccatac
caatag

>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_2|257_aa
MLKFIPETPQISRCHKKSMQTHPLLTEQTDPVRVPVETGIGDLNSARAMGDVTPRLPEWR
PGSHARMDKRLTGHTGPGAAVKRNGGGQSPRRALPPPPATQIPGHARTGVQPLTGKLPGK
EPRQERRRLEEGGFPVAKSNQQPWDLEAQWYSPYRLVSTSKEQSRETKQESKEVSDFVQA
TQQAIISFGEALAPGKPEGGEQGNSVSMLTEGGLLLSLTAAVSFVGSGSPIMCGNIIKRS
QCSNWHAEDTDKDSVNK

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_2|774_bp
atgctaaaatttattcctgaaacaccgcaaatttccagatgccacaaaaaatcaatgcaa
acgcaccccctcctaactgagcagacagacccggtgagggttccagttgaaactggaatt
ggagatctgaactccgctagagcaatgggagacgttaccccgaggcttccggagtggagg
ccaggctcccacgcccggatggacaaaaggctcacaggccacactggtcccggagccgct
gtgaaacgcaatggagggggacagtctcctcgccgcgctctgccgcccccacctgctacc
caaatcccgggacacgcccggacaggtgtgcagcctctaactggaaagctcccgggaaaa
gagccacgccaggaaaggaggcggctggaggagggggggttcccagtggccaaatccaac
cagcagccatgggatctagaagcccagtggtatagtccatataggttggtctccaccagc
aaagaacagagcagagaaacgaaacaagagagcaaggaagtctctgattttgtccaggcc
acacagcaggctatcatctcctttggtgaggctctagctcccggaaaaccagaaggagga
gagcaaggaaattctgtttccatgttaacagagggaggtctcctcctgtcactgactgct
gctgttagctttgtgggctctgggagcccaattatgtgtggaaacattataaaaaggagc
cagtgctcaaactggcatgcagaagacacggacaaagattccgtcaacaaataa

>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_3|685_aa
MAFGLALQKSPVGTQLFKEALFLACLEVTVCTYVTHSAVPEEQDLHPLGDGLDNSVASPG
TGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTIIGKISISSFHMTTVCKCIPWRS
GVIGNYRQVGLLWAPSVGAKLNAQGCPAAVVSHSRKNLCGELQPDSDFPLKSLQPVSFHP
KKGLLQHPYPSEEQKKQLAQDTGLTILQVNNWKKVEDNSLQILHNYPIATDSSCSGDSME
EGSVFDKRRCSVVRERERAGHQQLGSNSSSNNLCDLERMIYINMLPGHTKESQLVVIYQF
LILIFTTFALNFGSAMVIISPSLRKAIHAESSIPAILDSSSECSGMAAFQKLQGEEPSLT
LLSISAGFKSAHRRPDRVGPDCPPPKGLQLPRNTELPAHTEFFWLISKSLNCRSCRRAEV
FLASTYYCCVGDKTSDSLIDGFADLTIPCESRVLEPVSQGAAYSPEGQPMGSFVLDGQQH
MGIRPAGLQSMPGDYVSQGGPMGMSMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHP
AMMMHGGPPTHPGMTMSAQSPTMLNSVDPNVGGQLKSGNQEYGIELMLGAVQGQQKPKDL
RILRPRDLMGSKLICRGIYEHHVTRGRTGNESRNNLRLAAAPPAPPTSTLGKGAGNAALT
RISLPTATRPPHNECQSTPRNDFCF

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_3|2058_bp
atggcctttggtttagctctgcaaaaaagccctgtgggtactcagctcttcaaagaagct
ctgttcctggcatgtttagaagttactgtgtgcacatacgtaacccactcagctgttcca
gaggaacaagaccttcaccctttaggggatggtttagacaacagtgtagcttcacctggt
acaggtgacgatgatgatccggataaggacaaaaaacgccagaagaaaagaggcattttc
cccaaagtagcaacaaatatcatgagagcatggctcttccagcatctcacaatcataggg
aaaatttccatttcttcgttccacatgaccacagtttgcaagtgtattccatggagaagt
ggagtgattgggaattacaggcaggttggtttgctctgggctccctctgtgggtgccaaa
ctaaatgctcaaggctgtcctgcagctgtggtcagtcattcaaggaaaaatctttgtgga
gaactccaacctgattctgacttccctttgaaaagtttacaaccagtgtcatttcacccc
aagaagggcttgctgcagcatccgtacccttccgaagagcagaagaaacagttagcgcaa
gacacaggacttacaattctccaagtaaacaactggaaaaaagttgaagataactcattg
caaatattacacaattatcccatagcaactgattcaagctgcagcggggacagcatggag
gaaggttcagtgtttgacaaaagacgatgcagtgtggtgcgtgaaagagaacgggctgga
catcagcagcttgggtctaattccagctcaaacaacttgtgtgatcttgagcgcatgatc
tatatcaacatgcttcctggtcatactaaagaatctcagctagtggtgatctaccagttt
ctcatcctcatctttacaacatttgccctgaattttggttcagccatggttatcatatcc
ccttccctgcgcaaagcaatccatgcagaatcttcaattccagctattcttgattcctcc
tcagagtgttcagggatggcagctttccagaaacttcaaggagaagagccttctctgacc
ctcctgagcatctctgctggtttcaagagtgctcacaggaggcccgaccgagtggggcct
gactgtcctcctccaaagggacttcagcttcctcggaacacagagctgccagcacacact
gaatttttctggctaatttcaaagagcttaaactgcaggagttgccgaagagcagaagtc
tttctggccagcacttattactgctgtgttggtgataaaacttcagacagcctaattgat
ggctttgctgacctaacaataccttgtgaaagccgagtgctagagcctgtgagccaagga
gcagcatatagtccagagggtcagcccatggggagctttgtgttggatggtcagcaacac
atggggatccggcctgcaggtttgcagagcatgccaggggactacgtttctcagggtggt
cctatgggaatgagtatggcacagccaagttacactcctccccagatgaccccacaccct
actcaattaagacatggacccccaatgcattcatatttgccaagccatccccaccaccca
gccatgatgatgcacggaggaccccctacccaccctggaatgactatgtcagcacagagc
cccacaatgttaaattctgtagatcccaatgttggcggacagttgaaatctggtaaccag
gaatatggcattgaattaatgctgggagctgttcaaggtcagcagaagcccaaagacttg
agaattctaaggcccagagacttgatgggaagcaagttaatctgccgcgggatttatgag
caccatgtaacgcgagggcgcacaggtaacgagagccggaacaatctcaggctggcagcc
gcaccgcctgcaccgccaacctccactcttgggaaaggcgctggcaatgcagccctgact
cggataagtcttccaaccgcaaccagacccccacataacgagtgtcaatctacaccgcgg
aacgacttttgtttctga

>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_4|413_aa
MDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDAL
KRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAE
KPLFSSNPELDNLPLPSPMPRSTHFLLELWGVRTEPSFGALGREGGREQLRAPARELASE
EQDERAQLSHHHPHPTPNPKTGPQSHRALTPFPELFFQMIQAIQVLRFHLLELEKVHELC
DNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHCKVRPYGMLFKASGA
YSDKVLLLSSVHQLKEAWLGAQRLIFHILAITLTLQAFLTPSQLATPGITQHCCRNLPSQ
ASVELQQPQSGLAKPVRMEVLSVSSVESLRKSCVNRGRITKNEPLQLRAFGAI

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_4|1242_bp
atggacggagtaggggttcccgcttccatgtacggagaccctcacgcgccgcggccgatc
cccccggttcaccacctgaaccacgggccgccgctccacgccacacagcactacggcgcg
cacgccccgcaccccaatgtcatgccggccagtatgggatccgctgtcaacgacgccttg
aagcgggacaaggacgcgatctatgggcacccgttgtttcctctgttagctctggtcttt
gagaagtgcgagctggcgacctgcactccccgggaacctggagtggctggcggagacgtc
tgctcctccgactccttcaacgaggacatcgcggtcttcgccaagcaggttcgcgccgaa
aagccacttttttcctcaaatccagagctggacaatttgcctttgccctctcccatgccc
agaagcacccactttctgctggagctctggggagttagaacagaaccctcttttggagct
ctagggagagagggaggaagggagcagcttagagcccccgcacgggagctggcgagcgag
gagcaggatgaacgcgcccaactttctcaccaccatcctcaccccactcccaaccccaag
acaggacctcagagtcacagagctctaactccattccctgaacttttctttcagatgata
caagcaatacaagtactaaggtttcatcttttggagttagaaaaggtccacgaactgtgc
gataacttctgccaccgatacattagctgtttgaaggggaaaatgcccatcgacctcgtc
attgatgaaagagacggcagctccaagtcagatcatgaagaactttcaggctcctccaca
aatctcgctgaccattgtaaggtgagaccttatggtatgctattcaaagcctctggggcc
tattccgataaagttctacttctgagctctgtccaccaactcaaggaagcatggctggga
gcccagcgcctcatttttcacattcttgcaattacgttaacgcttcaagcatttctgact
ccaagtcagctagcaacaccaggcataactcaacactgttgtagaaatctcccatcacag
gccagcgtggagctgcagcagccacagtctgggctggccaagccagtgagaatggaagtg
ctttcggtctcttcagtggagagcctgcgtaaatcctgtgtaaatagagggaggataaca
aagaatgagcccctgcagctccgagcatttggagccatttga

>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_5|425_aa
MGPAPKELFQKGKGNEGNYPTPFGWKLVVAGALSSLARAAPGFTSARLVSRRPRVNHYEP
GVGGGATKRTAITFSHPKVLQELRERGEWLKRLITGGEGGARGGPKERGVKKEGPLPGLY
LEKALNRFSAIFGKGSSFATHTELDSRFKRLSKNSGSDNELSILQLEKVEPRQIPYYVSQ
IQQHRLILHALASPRLDCFLRCSDAAMRSRLDWADSTEGATLVLLAGPFLKDGWEQLLKK
IPECHKSSRAWNSSKQVQFIDSYIHIQKTAGTPYTVSLENIGFDDDAIGPWCFVIFHSTK
AATPRADKRPITRIMSQHILKWLSVRPEELQDLANMYLGGPEEYVWKLEPGGVELGGPIR
MKGKDLDERRTAIYPPFRHAGFGEEEKGCHPTGPQKDGPFLINQRRERTTFSVSKQVNSS
HTGRA

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_5|1278_bp
atggggccagctccgaaagaacttttccaaaaaggaaaaggaaacgaagggaactacccc
acaccgtttgggtggaaactagttgtggccggtgccctgtcctccctggcccgagctgca
ccaggcttcacctctgcgcggctggtttcccggcggccgcgcgtcaatcactacgagccc
ggagttgggggcggagccacgaagagaactgccatcactttctcacatcccaaggtgttg
caggaactcagagagaggggagagtggctgaaacgcttaattaccggaggcgaaggaggg
gcgcgcgggggaccgaaggagaggggagtgaagaaggaaggtcctttaccaggcttgtac
ctggagaaagctttgaatcgcttctctgctatatttggaaaaggaagtagttttgcaact
cacactgagttagattcgagatttaaacggttgtcgaagaacagtggatcagacaatgag
ctctccattttgcaacttgagaaagtggagcctaggcagataccatattatgtatcccaa
attcagcagcataggctgatattacatgcattggcatcaccgagattagactgctttcta
cggtgtagtgatgcagcaatgagatcacggctggattgggctgacagtaccgagggtgcc
accttagtgctcctcgctggaccatttttgaaagatggatgggagcagctgctcaaaaag
atcccagagtgccacaaaagctctagagcctggaattcctcaaagcaagtccaatttata
gattcctacattcatatacagaaaacagctgggaccccatacacagtatctttggaaaat
ataggatttgatgatgatgctattggtccatggtgctttgtcattttccatagcacaaaa
gccgcaacgcctcgagcggacaaaagaccaataactagaattatgtcacaacatattcta
aaatggttaagtgtcaggcctgaggagctgcaagacctagccaatatgtacctgggaggt
ccagaagagtatgtatggaaactggaacctggaggtgttgaattagggggcccaataaga
atgaaagggaaggatcttgatgaaaggaggacagctatttatccaccatttaggcatgca
ggctttggagaagaggagaaaggttgtcatcccactggccctcagaaagatgggcccttt
ctcatcaaccagaggagggaaaggactacctttagtgtgtcaaagcaggtcaatagcagc
cacacaggtcgggcatga

>gi568815583r:36794757_37198200|GENSCAN_predicted_peptide_6|179_aa
MQNSINAVDFSLHCSTYKVSIQKKIFFQETKQSIEPDPQINQMLKISDRAQIFRDPQLKP
RWLHSPSSTVIPELQIGSPQNSETAKSSFGYLLLNSLLSTWFSYLLAFSFTQAFSVACRL
NVCEGYKKKLSSSGTVKKCGGSAEQPEDTRALPYYTVCHSDVNNGCEVIKQIVLGSSSH

>gi568815583r:36794757_37198200|GENSCAN_predicted_CDS_6|540_bp
atgcagaacagcataaatgctgttgactttagtcttcactgttctacatataaagtcagc
attcaaaagaaaatcttctttcaagagactaagcaatcaatagaaccagacccacagata
aaccagatgttgaaaatatcagacagggctcagatattcagggaccctcaattgaagcca
aggtggcttcatagcccctcctccacagtcattccagaacttcagattgggtctccccag
aactctgaaactgccaaatcttcatttggctatctacttcttaacagtttgctttctact
tggtttagctatctcttggcatttagcttcactcaagctttctctgtcgcttgtcgactt
aatgtgtgtgagggctataaaaagaagctaagtagttctggcacagtaaagaagtgtgga
ggcagtgctgaacagccagaggacacaagagctctaccatattatactgtttgtcactct
gatgtgaacaatggctgtgaagttattaaacagattgtcctgggttcttcctctcattag